mirror of
https://github.com/dptech-corp/Uni-Lab-OS.git
synced 2026-02-04 05:15:10 +00:00
Compare commits
122 Commits
feat/add_c
...
prcix9320
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
aeeb36d075 | ||
|
|
3478bfd7ed | ||
|
|
d6910da57d | ||
|
|
2cf58ca452 | ||
|
|
fd73bb7dcb | ||
|
|
a02cecfd18 | ||
|
|
d6accc3f1c | ||
|
|
39dc443399 | ||
|
|
37b1fca962 | ||
|
|
216f19fb62 | ||
|
|
d5b4f07406 | ||
|
|
470d7283e4 | ||
|
|
03f7f44c77 | ||
|
|
ec7ca6a1fe | ||
|
|
4c8022ee95 | ||
|
|
6f600b4fc7 | ||
|
|
269ce440d1 | ||
|
|
be054589b5 | ||
|
|
b045ab4e0a | ||
|
|
4595f86725 | ||
|
|
44a4c2362d | ||
|
|
1340bae838 | ||
|
|
ae75f07c8e | ||
|
|
18d0ba7a46 | ||
|
|
de7fbe7ac8 | ||
|
|
31e8d065c4 | ||
|
|
219a480c08 | ||
|
|
e9f1a7bb44 | ||
|
|
ead43b2bc1 | ||
|
|
cef86fd98d | ||
|
|
6993e97ae9 | ||
|
|
db396bcab3 | ||
|
|
1fed8de57d | ||
|
|
63eb0c0a4c | ||
|
|
888c6cf542 | ||
|
|
cc248fc32c | ||
|
|
cfe64b023b | ||
|
|
ad1312cf26 | ||
|
|
799813f85b | ||
|
|
19c9d655d0 | ||
|
|
f9a9e35269 | ||
|
|
8cd306cd32 | ||
|
|
816a0d747b | ||
|
|
b0cff1a7a8 | ||
|
|
71d57c5631 | ||
|
|
546fb633ec | ||
|
|
a3c7fa9385 | ||
|
|
c6cf84def0 | ||
|
|
86512a0482 | ||
|
|
3ddbc1c9b7 | ||
|
|
abf1005241 | ||
|
|
c475eabb60 | ||
|
|
3ad20c85a5 | ||
|
|
44fc80c70f | ||
|
|
8ba911bb55 | ||
|
|
896f287d92 | ||
|
|
0d150f7acd | ||
|
|
c27f7e42d6 | ||
|
|
cc56a68bc6 | ||
|
|
d7302c3b35 | ||
|
|
b46a51c40e | ||
|
|
c6780087b8 | ||
|
|
1ef698dde6 | ||
|
|
91aadba4ef | ||
|
|
b1cdef9185 | ||
|
|
9854ed8c9c | ||
|
|
52544a2c69 | ||
|
|
5ce433e235 | ||
|
|
c7c14d2332 | ||
|
|
6fdd482649 | ||
|
|
d390236318 | ||
|
|
ed8ee29732 | ||
|
|
ffc583e9d5 | ||
|
|
f1ad0c9c96 | ||
|
|
8fa3407649 | ||
|
|
d3282822fc | ||
|
|
554bcade24 | ||
|
|
a662c75de1 | ||
|
|
931614fe64 | ||
|
|
d39662f65f | ||
|
|
acf5fdebf8 | ||
|
|
7f7b1c13c0 | ||
|
|
75f09034ff | ||
|
|
549a50220b | ||
|
|
4189a2cfbe | ||
|
|
48895a9bb1 | ||
|
|
891f126ed6 | ||
|
|
4d3475a849 | ||
|
|
b475db66df | ||
|
|
a625a86e3e | ||
|
|
37e0f1037c | ||
|
|
a242253145 | ||
|
|
448e0074b7 | ||
|
|
304827fc8d | ||
|
|
872b3d781f | ||
|
|
813400f2b4 | ||
|
|
b6dfe2b944 | ||
|
|
8807865649 | ||
|
|
5fc7eb7586 | ||
|
|
9bd72b48e1 | ||
|
|
42b78ab4c1 | ||
|
|
9645609a05 | ||
|
|
a2a827d7ac | ||
|
|
bb3ca645a4 | ||
|
|
37ee43d19a | ||
|
|
bc30f23e34 | ||
|
|
166d84afe1 | ||
|
|
1b43c53015 | ||
|
|
d4415f5a35 | ||
|
|
0260cbbedb | ||
|
|
7c440d10ab | ||
|
|
c85c49817d | ||
|
|
c70eafa5f0 | ||
|
|
b64466d443 | ||
|
|
ef3f24ed48 | ||
|
|
2a8e8d014b | ||
|
|
e0da1c7217 | ||
|
|
51d3e61723 | ||
|
|
6b5765bbf3 | ||
|
|
eb1f3fbe1c | ||
|
|
fb93b1cd94 | ||
|
|
9aeffebde1 |
60
.conda/base/recipe.yaml
Normal file
60
.conda/base/recipe.yaml
Normal file
@@ -0,0 +1,60 @@
|
||||
# unilabos: Production package (depends on unilabos-env + pip unilabos)
|
||||
# For production deployment
|
||||
|
||||
package:
|
||||
name: unilabos
|
||||
version: 0.10.17
|
||||
|
||||
source:
|
||||
path: ../../unilabos
|
||||
target_directory: unilabos
|
||||
|
||||
build:
|
||||
python:
|
||||
entry_points:
|
||||
- unilab = unilabos.app.main:main
|
||||
script:
|
||||
- set PIP_NO_INDEX=
|
||||
- if: win
|
||||
then:
|
||||
- copy %RECIPE_DIR%\..\..\MANIFEST.in %SRC_DIR%
|
||||
- copy %RECIPE_DIR%\..\..\setup.cfg %SRC_DIR%
|
||||
- copy %RECIPE_DIR%\..\..\setup.py %SRC_DIR%
|
||||
- pip install %SRC_DIR%
|
||||
- if: unix
|
||||
then:
|
||||
- cp $RECIPE_DIR/../../MANIFEST.in $SRC_DIR
|
||||
- cp $RECIPE_DIR/../../setup.cfg $SRC_DIR
|
||||
- cp $RECIPE_DIR/../../setup.py $SRC_DIR
|
||||
- pip install $SRC_DIR
|
||||
|
||||
requirements:
|
||||
host:
|
||||
- python ==3.11.14
|
||||
- pip
|
||||
- setuptools
|
||||
- zstd
|
||||
- zstandard
|
||||
run:
|
||||
- zstd
|
||||
- zstandard
|
||||
- networkx
|
||||
- typing_extensions
|
||||
- websockets
|
||||
- pint
|
||||
- fastapi
|
||||
- jinja2
|
||||
- requests
|
||||
- uvicorn
|
||||
- opcua
|
||||
- pyserial
|
||||
- pandas
|
||||
- pymodbus
|
||||
- matplotlib
|
||||
- pylibftdi
|
||||
- uni-lab::unilabos-env ==0.10.17
|
||||
|
||||
about:
|
||||
repository: https://github.com/deepmodeling/Uni-Lab-OS
|
||||
license: GPL-3.0-only
|
||||
description: "UniLabOS - Production package with minimal ROS2 dependencies"
|
||||
39
.conda/environment/recipe.yaml
Normal file
39
.conda/environment/recipe.yaml
Normal file
@@ -0,0 +1,39 @@
|
||||
# unilabos-env: conda environment dependencies (ROS2 + conda packages)
|
||||
|
||||
package:
|
||||
name: unilabos-env
|
||||
version: 0.10.17
|
||||
|
||||
build:
|
||||
noarch: generic
|
||||
|
||||
requirements:
|
||||
run:
|
||||
# Python
|
||||
- zstd
|
||||
- zstandard
|
||||
- conda-forge::python ==3.11.14
|
||||
- conda-forge::opencv
|
||||
# ROS2 dependencies (from ci-check.yml)
|
||||
- robostack-staging::ros-humble-ros-core
|
||||
- robostack-staging::ros-humble-action-msgs
|
||||
- robostack-staging::ros-humble-std-msgs
|
||||
- robostack-staging::ros-humble-geometry-msgs
|
||||
- robostack-staging::ros-humble-control-msgs
|
||||
- robostack-staging::ros-humble-nav2-msgs
|
||||
- robostack-staging::ros-humble-cv-bridge
|
||||
- robostack-staging::ros-humble-vision-opencv
|
||||
- robostack-staging::ros-humble-tf-transformations
|
||||
- robostack-staging::ros-humble-moveit-msgs
|
||||
- robostack-staging::ros-humble-tf2-ros
|
||||
- robostack-staging::ros-humble-tf2-ros-py
|
||||
- conda-forge::transforms3d
|
||||
- conda-forge::uv
|
||||
|
||||
# UniLabOS custom messages
|
||||
- uni-lab::ros-humble-unilabos-msgs
|
||||
|
||||
about:
|
||||
repository: https://github.com/deepmodeling/Uni-Lab-OS
|
||||
license: GPL-3.0-only
|
||||
description: "UniLabOS Environment - ROS2 and conda dependencies"
|
||||
42
.conda/full/recipe.yaml
Normal file
42
.conda/full/recipe.yaml
Normal file
@@ -0,0 +1,42 @@
|
||||
# unilabos-full: Full package with all features
|
||||
# Depends on unilabos + complete ROS2 desktop + dev tools
|
||||
|
||||
package:
|
||||
name: unilabos-full
|
||||
version: 0.10.17
|
||||
|
||||
build:
|
||||
noarch: generic
|
||||
|
||||
requirements:
|
||||
run:
|
||||
# Base unilabos package (includes unilabos-env)
|
||||
- uni-lab::unilabos ==0.10.17
|
||||
# Documentation tools
|
||||
- sphinx
|
||||
- sphinx_rtd_theme
|
||||
# Web UI
|
||||
- gradio
|
||||
- flask
|
||||
# Interactive development
|
||||
- ipython
|
||||
- jupyter
|
||||
- jupyros
|
||||
- colcon-common-extensions
|
||||
# ROS2 full desktop (includes rviz2, gazebo, etc.)
|
||||
- robostack-staging::ros-humble-desktop-full
|
||||
# Navigation and motion control
|
||||
- ros-humble-navigation2
|
||||
- ros-humble-ros2-control
|
||||
- ros-humble-robot-state-publisher
|
||||
- ros-humble-joint-state-publisher
|
||||
# MoveIt motion planning
|
||||
- ros-humble-moveit
|
||||
- ros-humble-moveit-servo
|
||||
# Simulation
|
||||
- ros-humble-simulation
|
||||
|
||||
about:
|
||||
repository: https://github.com/deepmodeling/Uni-Lab-OS
|
||||
license: GPL-3.0-only
|
||||
description: "UniLabOS Full - Complete package with ROS2 Desktop, MoveIt, Navigation2, Gazebo, Jupyter"
|
||||
@@ -1,91 +0,0 @@
|
||||
package:
|
||||
name: unilabos
|
||||
version: 0.10.15
|
||||
|
||||
source:
|
||||
path: ../unilabos
|
||||
target_directory: unilabos
|
||||
|
||||
build:
|
||||
python:
|
||||
entry_points:
|
||||
- unilab = unilabos.app.main:main
|
||||
script:
|
||||
- set PIP_NO_INDEX=
|
||||
- if: win
|
||||
then:
|
||||
- copy %RECIPE_DIR%\..\MANIFEST.in %SRC_DIR%
|
||||
- copy %RECIPE_DIR%\..\setup.cfg %SRC_DIR%
|
||||
- copy %RECIPE_DIR%\..\setup.py %SRC_DIR%
|
||||
- call %PYTHON% -m pip install %SRC_DIR%
|
||||
- if: unix
|
||||
then:
|
||||
- cp $RECIPE_DIR/../MANIFEST.in $SRC_DIR
|
||||
- cp $RECIPE_DIR/../setup.cfg $SRC_DIR
|
||||
- cp $RECIPE_DIR/../setup.py $SRC_DIR
|
||||
- $PYTHON -m pip install $SRC_DIR
|
||||
|
||||
requirements:
|
||||
host:
|
||||
- python ==3.11.11
|
||||
- pip
|
||||
- setuptools
|
||||
- zstd
|
||||
- zstandard
|
||||
run:
|
||||
- conda-forge::python ==3.11.11
|
||||
- compilers
|
||||
- cmake
|
||||
- zstd
|
||||
- zstandard
|
||||
- ninja
|
||||
- if: unix
|
||||
then:
|
||||
- make
|
||||
- sphinx
|
||||
- sphinx_rtd_theme
|
||||
- numpy
|
||||
- scipy
|
||||
- pandas
|
||||
- networkx
|
||||
- matplotlib
|
||||
- pint
|
||||
- pyserial
|
||||
- pyusb
|
||||
- pylibftdi
|
||||
- pymodbus
|
||||
- python-can
|
||||
- pyvisa
|
||||
- opencv
|
||||
- pydantic
|
||||
- fastapi
|
||||
- uvicorn
|
||||
- gradio
|
||||
- flask
|
||||
- websockets
|
||||
- ipython
|
||||
- jupyter
|
||||
- jupyros
|
||||
- colcon-common-extensions
|
||||
- robostack-staging::ros-humble-desktop-full
|
||||
- robostack-staging::ros-humble-control-msgs
|
||||
- robostack-staging::ros-humble-sensor-msgs
|
||||
- robostack-staging::ros-humble-trajectory-msgs
|
||||
- ros-humble-navigation2
|
||||
- ros-humble-ros2-control
|
||||
- ros-humble-robot-state-publisher
|
||||
- ros-humble-joint-state-publisher
|
||||
- ros-humble-rosbridge-server
|
||||
- ros-humble-cv-bridge
|
||||
- ros-humble-tf2
|
||||
- ros-humble-moveit
|
||||
- ros-humble-moveit-servo
|
||||
- ros-humble-simulation
|
||||
- ros-humble-tf-transformations
|
||||
- transforms3d
|
||||
- uni-lab::ros-humble-unilabos-msgs
|
||||
|
||||
about:
|
||||
repository: https://github.com/deepmodeling/Uni-Lab-OS
|
||||
license: GPL-3.0-only
|
||||
description: "Uni-Lab-OS"
|
||||
67
.github/workflows/ci-check.yml
vendored
Normal file
67
.github/workflows/ci-check.yml
vendored
Normal file
@@ -0,0 +1,67 @@
|
||||
name: CI Check
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: [main, dev]
|
||||
pull_request:
|
||||
branches: [main, dev]
|
||||
|
||||
jobs:
|
||||
registry-check:
|
||||
runs-on: windows-latest
|
||||
|
||||
env:
|
||||
# Fix Unicode encoding issue on Windows runner (cp1252 -> utf-8)
|
||||
PYTHONIOENCODING: utf-8
|
||||
PYTHONUTF8: 1
|
||||
|
||||
defaults:
|
||||
run:
|
||||
shell: cmd
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v6
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Setup Miniforge
|
||||
uses: conda-incubator/setup-miniconda@v3
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
channels: robostack-staging,conda-forge,uni-lab
|
||||
channel-priority: flexible
|
||||
activate-environment: check-env
|
||||
auto-update-conda: false
|
||||
show-channel-urls: true
|
||||
|
||||
- name: Install ROS dependencies, uv and unilabos-msgs
|
||||
run: |
|
||||
echo Installing ROS dependencies...
|
||||
mamba install -n check-env conda-forge::uv conda-forge::opencv robostack-staging::ros-humble-ros-core robostack-staging::ros-humble-action-msgs robostack-staging::ros-humble-std-msgs robostack-staging::ros-humble-geometry-msgs robostack-staging::ros-humble-control-msgs robostack-staging::ros-humble-nav2-msgs uni-lab::ros-humble-unilabos-msgs robostack-staging::ros-humble-cv-bridge robostack-staging::ros-humble-vision-opencv robostack-staging::ros-humble-tf-transformations robostack-staging::ros-humble-moveit-msgs robostack-staging::ros-humble-tf2-ros robostack-staging::ros-humble-tf2-ros-py conda-forge::transforms3d -c robostack-staging -c conda-forge -c uni-lab -y
|
||||
|
||||
- name: Install pip dependencies and unilabos
|
||||
run: |
|
||||
call conda activate check-env
|
||||
echo Installing pip dependencies...
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
uv pip install pywinauto git+https://github.com/Xuwznln/pylabrobot.git
|
||||
uv pip uninstall enum34 || echo enum34 not installed, skipping
|
||||
uv pip install .
|
||||
|
||||
- name: Run check mode (complete_registry)
|
||||
run: |
|
||||
call conda activate check-env
|
||||
echo Running check mode...
|
||||
python -m unilabos --check_mode --skip_env_check
|
||||
|
||||
- name: Check for uncommitted changes
|
||||
shell: bash
|
||||
run: |
|
||||
if ! git diff --exit-code; then
|
||||
echo "::error::检测到文件变化!请先在本地运行 'python -m unilabos --complete_registry' 并提交变更"
|
||||
echo "变化的文件:"
|
||||
git diff --name-only
|
||||
exit 1
|
||||
fi
|
||||
echo "检查通过:无文件变化"
|
||||
43
.github/workflows/conda-pack-build.yml
vendored
43
.github/workflows/conda-pack-build.yml
vendored
@@ -13,6 +13,11 @@ on:
|
||||
required: false
|
||||
default: 'win-64'
|
||||
type: string
|
||||
build_full:
|
||||
description: '是否构建完整版 unilabos-full (默认构建轻量版 unilabos)'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
|
||||
jobs:
|
||||
build-conda-pack:
|
||||
@@ -57,7 +62,7 @@ jobs:
|
||||
echo "should_build=false" >> $GITHUB_OUTPUT
|
||||
fi
|
||||
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
with:
|
||||
ref: ${{ github.event.inputs.branch }}
|
||||
@@ -69,7 +74,7 @@ jobs:
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
python-version: '3.11.11'
|
||||
python-version: '3.11.14'
|
||||
channels: conda-forge,robostack-staging,uni-lab,defaults
|
||||
channel-priority: flexible
|
||||
activate-environment: unilab
|
||||
@@ -81,7 +86,14 @@ jobs:
|
||||
run: |
|
||||
echo Installing unilabos and dependencies to unilab environment...
|
||||
echo Using mamba for faster and more reliable dependency resolution...
|
||||
mamba install -n unilab uni-lab::unilabos conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
echo Build full: ${{ github.event.inputs.build_full }}
|
||||
if "${{ github.event.inputs.build_full }}"=="true" (
|
||||
echo Installing unilabos-full ^(complete package^)...
|
||||
mamba install -n unilab uni-lab::unilabos-full conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
) else (
|
||||
echo Installing unilabos ^(minimal package^)...
|
||||
mamba install -n unilab uni-lab::unilabos conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
)
|
||||
|
||||
- name: Install conda-pack, unilabos and dependencies (Unix)
|
||||
if: steps.should_build.outputs.should_build == 'true' && matrix.platform != 'win-64'
|
||||
@@ -89,7 +101,14 @@ jobs:
|
||||
run: |
|
||||
echo "Installing unilabos and dependencies to unilab environment..."
|
||||
echo "Using mamba for faster and more reliable dependency resolution..."
|
||||
mamba install -n unilab uni-lab::unilabos conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
echo "Build full: ${{ github.event.inputs.build_full }}"
|
||||
if [[ "${{ github.event.inputs.build_full }}" == "true" ]]; then
|
||||
echo "Installing unilabos-full (complete package)..."
|
||||
mamba install -n unilab uni-lab::unilabos-full conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
else
|
||||
echo "Installing unilabos (minimal package)..."
|
||||
mamba install -n unilab uni-lab::unilabos conda-pack -c uni-lab -c robostack-staging -c conda-forge -y
|
||||
fi
|
||||
|
||||
- name: Get latest ros-humble-unilabos-msgs version (Windows)
|
||||
if: steps.should_build.outputs.should_build == 'true' && matrix.platform == 'win-64'
|
||||
@@ -293,7 +312,7 @@ jobs:
|
||||
|
||||
- name: Upload distribution package
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
uses: actions/upload-artifact@v4
|
||||
uses: actions/upload-artifact@v6
|
||||
with:
|
||||
name: unilab-pack-${{ matrix.platform }}-${{ github.event.inputs.branch }}
|
||||
path: dist-package/
|
||||
@@ -308,7 +327,12 @@ jobs:
|
||||
echo ==========================================
|
||||
echo Platform: ${{ matrix.platform }}
|
||||
echo Branch: ${{ github.event.inputs.branch }}
|
||||
echo Python version: 3.11.11
|
||||
echo Python version: 3.11.14
|
||||
if "${{ github.event.inputs.build_full }}"=="true" (
|
||||
echo Package: unilabos-full ^(complete^)
|
||||
) else (
|
||||
echo Package: unilabos ^(minimal^)
|
||||
)
|
||||
echo.
|
||||
echo Distribution package contents:
|
||||
dir dist-package
|
||||
@@ -328,7 +352,12 @@ jobs:
|
||||
echo "=========================================="
|
||||
echo "Platform: ${{ matrix.platform }}"
|
||||
echo "Branch: ${{ github.event.inputs.branch }}"
|
||||
echo "Python version: 3.11.11"
|
||||
echo "Python version: 3.11.14"
|
||||
if [[ "${{ github.event.inputs.build_full }}" == "true" ]]; then
|
||||
echo "Package: unilabos-full (complete)"
|
||||
else
|
||||
echo "Package: unilabos (minimal)"
|
||||
fi
|
||||
echo ""
|
||||
echo "Distribution package contents:"
|
||||
ls -lh dist-package/
|
||||
|
||||
37
.github/workflows/deploy-docs.yml
vendored
37
.github/workflows/deploy-docs.yml
vendored
@@ -1,10 +1,12 @@
|
||||
name: Deploy Docs
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: [main]
|
||||
pull_request:
|
||||
# 在 CI Check 成功后自动触发(仅 main 分支)
|
||||
workflow_run:
|
||||
workflows: ["CI Check"]
|
||||
types: [completed]
|
||||
branches: [main]
|
||||
# 手动触发
|
||||
workflow_dispatch:
|
||||
inputs:
|
||||
branch:
|
||||
@@ -33,12 +35,19 @@ concurrency:
|
||||
jobs:
|
||||
# Build documentation
|
||||
build:
|
||||
# 只在以下情况运行:
|
||||
# 1. workflow_run 触发且 CI Check 成功
|
||||
# 2. 手动触发
|
||||
if: |
|
||||
github.event_name == 'workflow_dispatch' ||
|
||||
(github.event_name == 'workflow_run' && github.event.workflow_run.conclusion == 'success')
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: Checkout code
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
ref: ${{ github.event.inputs.branch || github.ref }}
|
||||
# workflow_run 时使用触发工作流的分支,手动触发时使用输入的分支
|
||||
ref: ${{ github.event.workflow_run.head_branch || github.event.inputs.branch || github.ref }}
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Setup Miniforge (with mamba)
|
||||
@@ -46,7 +55,7 @@ jobs:
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
python-version: '3.11.11'
|
||||
python-version: '3.11.14'
|
||||
channels: conda-forge,robostack-staging,uni-lab,defaults
|
||||
channel-priority: flexible
|
||||
activate-environment: unilab
|
||||
@@ -75,8 +84,10 @@ jobs:
|
||||
|
||||
- name: Setup Pages
|
||||
id: pages
|
||||
uses: actions/configure-pages@v4
|
||||
if: github.ref == 'refs/heads/main' || (github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
uses: actions/configure-pages@v5
|
||||
if: |
|
||||
github.event.workflow_run.head_branch == 'main' ||
|
||||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
|
||||
- name: Build Sphinx documentation
|
||||
run: |
|
||||
@@ -94,14 +105,18 @@ jobs:
|
||||
test -f docs/_build/html/index.html && echo "✓ index.html exists" || echo "✗ index.html missing"
|
||||
|
||||
- name: Upload build artifacts
|
||||
uses: actions/upload-pages-artifact@v3
|
||||
if: github.ref == 'refs/heads/main' || (github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
uses: actions/upload-pages-artifact@v4
|
||||
if: |
|
||||
github.event.workflow_run.head_branch == 'main' ||
|
||||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
with:
|
||||
path: docs/_build/html
|
||||
|
||||
# Deploy to GitHub Pages
|
||||
deploy:
|
||||
if: github.ref == 'refs/heads/main' || (github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
if: |
|
||||
github.event.workflow_run.head_branch == 'main' ||
|
||||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
environment:
|
||||
name: github-pages
|
||||
url: ${{ steps.deployment.outputs.page_url }}
|
||||
|
||||
46
.github/workflows/multi-platform-build.yml
vendored
46
.github/workflows/multi-platform-build.yml
vendored
@@ -1,11 +1,16 @@
|
||||
name: Multi-Platform Conda Build
|
||||
|
||||
on:
|
||||
# 在 CI Check 工作流完成后触发(仅限 main/dev 分支)
|
||||
workflow_run:
|
||||
workflows: ["CI Check"]
|
||||
types:
|
||||
- completed
|
||||
branches: [main, dev]
|
||||
# 支持 tag 推送(不依赖 CI Check)
|
||||
push:
|
||||
branches: [main, dev]
|
||||
tags: ['v*']
|
||||
pull_request:
|
||||
branches: [main, dev]
|
||||
# 手动触发
|
||||
workflow_dispatch:
|
||||
inputs:
|
||||
platforms:
|
||||
@@ -17,9 +22,37 @@ on:
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
skip_ci_check:
|
||||
description: '跳过等待 CI Check (手动触发时可选)'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
|
||||
jobs:
|
||||
# 等待 CI Check 完成的 job (仅用于 workflow_run 触发)
|
||||
wait-for-ci:
|
||||
runs-on: ubuntu-latest
|
||||
if: github.event_name == 'workflow_run'
|
||||
outputs:
|
||||
should_continue: ${{ steps.check.outputs.should_continue }}
|
||||
steps:
|
||||
- name: Check CI status
|
||||
id: check
|
||||
run: |
|
||||
if [[ "${{ github.event.workflow_run.conclusion }}" == "success" ]]; then
|
||||
echo "should_continue=true" >> $GITHUB_OUTPUT
|
||||
echo "CI Check passed, proceeding with build"
|
||||
else
|
||||
echo "should_continue=false" >> $GITHUB_OUTPUT
|
||||
echo "CI Check did not succeed (status: ${{ github.event.workflow_run.conclusion }}), skipping build"
|
||||
fi
|
||||
|
||||
build:
|
||||
needs: [wait-for-ci]
|
||||
# 运行条件:workflow_run 触发且 CI 成功,或者其他触发方式
|
||||
if: |
|
||||
always() &&
|
||||
(needs.wait-for-ci.result == 'skipped' || needs.wait-for-ci.outputs.should_continue == 'true')
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
@@ -44,8 +77,10 @@ jobs:
|
||||
shell: bash -l {0}
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
with:
|
||||
# 如果是 workflow_run 触发,使用触发 CI Check 的 commit
|
||||
ref: ${{ github.event.workflow_run.head_sha || github.ref }}
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Check if platform should be built
|
||||
@@ -69,7 +104,6 @@ jobs:
|
||||
channels: conda-forge,robostack-staging,defaults
|
||||
channel-priority: strict
|
||||
activate-environment: build-env
|
||||
auto-activate-base: false
|
||||
auto-update-conda: false
|
||||
show-channel-urls: true
|
||||
|
||||
@@ -115,7 +149,7 @@ jobs:
|
||||
|
||||
- name: Upload conda package artifacts
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
uses: actions/upload-artifact@v4
|
||||
uses: actions/upload-artifact@v6
|
||||
with:
|
||||
name: conda-package-${{ matrix.platform }}
|
||||
path: conda-packages-temp
|
||||
|
||||
113
.github/workflows/unilabos-conda-build.yml
vendored
113
.github/workflows/unilabos-conda-build.yml
vendored
@@ -1,25 +1,62 @@
|
||||
name: UniLabOS Conda Build
|
||||
|
||||
on:
|
||||
# 在 CI Check 成功后自动触发
|
||||
workflow_run:
|
||||
workflows: ["CI Check"]
|
||||
types: [completed]
|
||||
branches: [main, dev]
|
||||
# 标签推送时直接触发(发布版本)
|
||||
push:
|
||||
branches: [main, dev]
|
||||
tags: ['v*']
|
||||
pull_request:
|
||||
branches: [main, dev]
|
||||
# 手动触发
|
||||
workflow_dispatch:
|
||||
inputs:
|
||||
platforms:
|
||||
description: '选择构建平台 (逗号分隔): linux-64, osx-64, osx-arm64, win-64'
|
||||
required: false
|
||||
default: 'linux-64'
|
||||
build_full:
|
||||
description: '是否构建 unilabos-full 完整包 (默认只构建 unilabos 基础包)'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
upload_to_anaconda:
|
||||
description: '是否上传到Anaconda.org'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
skip_ci_check:
|
||||
description: '跳过等待 CI Check (手动触发时可选)'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
|
||||
jobs:
|
||||
# 等待 CI Check 完成的 job (仅用于 workflow_run 触发)
|
||||
wait-for-ci:
|
||||
runs-on: ubuntu-latest
|
||||
if: github.event_name == 'workflow_run'
|
||||
outputs:
|
||||
should_continue: ${{ steps.check.outputs.should_continue }}
|
||||
steps:
|
||||
- name: Check CI status
|
||||
id: check
|
||||
run: |
|
||||
if [[ "${{ github.event.workflow_run.conclusion }}" == "success" ]]; then
|
||||
echo "should_continue=true" >> $GITHUB_OUTPUT
|
||||
echo "CI Check passed, proceeding with build"
|
||||
else
|
||||
echo "should_continue=false" >> $GITHUB_OUTPUT
|
||||
echo "CI Check did not succeed (status: ${{ github.event.workflow_run.conclusion }}), skipping build"
|
||||
fi
|
||||
|
||||
build:
|
||||
needs: [wait-for-ci]
|
||||
# 运行条件:workflow_run 触发且 CI 成功,或者其他触发方式
|
||||
if: |
|
||||
always() &&
|
||||
(needs.wait-for-ci.result == 'skipped' || needs.wait-for-ci.outputs.should_continue == 'true')
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
@@ -40,8 +77,10 @@ jobs:
|
||||
shell: bash -l {0}
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
with:
|
||||
# 如果是 workflow_run 触发,使用触发 CI Check 的 commit
|
||||
ref: ${{ github.event.workflow_run.head_sha || github.ref }}
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Check if platform should be built
|
||||
@@ -65,7 +104,6 @@ jobs:
|
||||
channels: conda-forge,robostack-staging,uni-lab,defaults
|
||||
channel-priority: strict
|
||||
activate-environment: build-env
|
||||
auto-activate-base: false
|
||||
auto-update-conda: false
|
||||
show-channel-urls: true
|
||||
|
||||
@@ -81,12 +119,61 @@ jobs:
|
||||
conda list | grep -E "(rattler-build|anaconda-client)"
|
||||
echo "Platform: ${{ matrix.platform }}"
|
||||
echo "OS: ${{ matrix.os }}"
|
||||
echo "Building UniLabOS package"
|
||||
echo "Build full package: ${{ github.event.inputs.build_full || 'false' }}"
|
||||
echo "Building packages:"
|
||||
echo " - unilabos-env (environment dependencies)"
|
||||
echo " - unilabos (with pip package)"
|
||||
if [[ "${{ github.event.inputs.build_full }}" == "true" ]]; then
|
||||
echo " - unilabos-full (complete package)"
|
||||
fi
|
||||
|
||||
- name: Build conda package
|
||||
- name: Build unilabos-env (conda environment only, noarch)
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
rattler-build build -r .conda/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge
|
||||
echo "Building unilabos-env (conda environment dependencies)..."
|
||||
rattler-build build -r .conda/environment/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge
|
||||
|
||||
- name: Upload unilabos-env to Anaconda.org (if enabled)
|
||||
if: steps.should_build.outputs.should_build == 'true' && github.event.inputs.upload_to_anaconda == 'true'
|
||||
run: |
|
||||
echo "Uploading unilabos-env to uni-lab organization..."
|
||||
for package in $(find ./output -name "unilabos-env*.conda"); do
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
- name: Build unilabos (with pip package)
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
echo "Building unilabos package..."
|
||||
# 如果已上传到 Anaconda,从 uni-lab channel 获取 unilabos-env;否则从本地 output 获取
|
||||
rattler-build build -r .conda/base/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
|
||||
|
||||
- name: Upload unilabos to Anaconda.org (if enabled)
|
||||
if: steps.should_build.outputs.should_build == 'true' && github.event.inputs.upload_to_anaconda == 'true'
|
||||
run: |
|
||||
echo "Uploading unilabos to uni-lab organization..."
|
||||
for package in $(find ./output -name "unilabos-0*.conda" -o -name "unilabos-[0-9]*.conda"); do
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
- name: Build unilabos-full - Only when explicitly requested
|
||||
if: |
|
||||
steps.should_build.outputs.should_build == 'true' &&
|
||||
github.event.inputs.build_full == 'true'
|
||||
run: |
|
||||
echo "Building unilabos-full package on ${{ matrix.platform }}..."
|
||||
rattler-build build -r .conda/full/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
|
||||
|
||||
- name: Upload unilabos-full to Anaconda.org (if enabled)
|
||||
if: |
|
||||
steps.should_build.outputs.should_build == 'true' &&
|
||||
github.event.inputs.build_full == 'true' &&
|
||||
github.event.inputs.upload_to_anaconda == 'true'
|
||||
run: |
|
||||
echo "Uploading unilabos-full to uni-lab organization..."
|
||||
for package in $(find ./output -name "unilabos-full*.conda"); do
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
- name: List built packages
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
@@ -108,17 +195,9 @@ jobs:
|
||||
|
||||
- name: Upload conda package artifacts
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
uses: actions/upload-artifact@v4
|
||||
uses: actions/upload-artifact@v6
|
||||
with:
|
||||
name: conda-package-unilabos-${{ matrix.platform }}
|
||||
path: conda-packages-temp
|
||||
if-no-files-found: warn
|
||||
retention-days: 30
|
||||
|
||||
- name: Upload to Anaconda.org (uni-lab organization)
|
||||
if: github.event.inputs.upload_to_anaconda == 'true'
|
||||
run: |
|
||||
for package in $(find ./output -name "*.conda"); do
|
||||
echo "Uploading $package to uni-lab organization..."
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
@@ -1,4 +1,5 @@
|
||||
recursive-include unilabos/test *
|
||||
recursive-include unilabos/utils *
|
||||
recursive-include unilabos/registry *.yaml
|
||||
recursive-include unilabos/app/web/static *
|
||||
recursive-include unilabos/app/web/templates *
|
||||
|
||||
38
README.md
38
README.md
@@ -31,26 +31,46 @@ Detailed documentation can be found at:
|
||||
|
||||
## Quick Start
|
||||
|
||||
1. Setup Conda Environment
|
||||
### 1. Setup Conda Environment
|
||||
|
||||
Uni-Lab-OS recommends using `mamba` for environment management:
|
||||
Uni-Lab-OS recommends using `mamba` for environment management. Choose the package that fits your needs:
|
||||
|
||||
| Package | Use Case | Contents |
|
||||
|---------|----------|----------|
|
||||
| `unilabos` | **Recommended for most users** | Complete package, ready to use |
|
||||
| `unilabos-env` | Developers (editable install) | Environment only, install unilabos via pip |
|
||||
| `unilabos-full` | Simulation/Visualization | unilabos + ROS2 Desktop + Gazebo + MoveIt |
|
||||
|
||||
```bash
|
||||
# Create new environment
|
||||
mamba create -n unilab python=3.11.11
|
||||
mamba create -n unilab python=3.11.14
|
||||
mamba activate unilab
|
||||
mamba install -n unilab uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# Option A: Standard installation (recommended for most users)
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# Option B: For developers (editable mode development)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
# Then install unilabos and dependencies:
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git && cd Uni-Lab-OS
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
|
||||
# Option C: Full installation (simulation/visualization)
|
||||
mamba install uni-lab::unilabos-full -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
2. Install Dev Uni-Lab-OS
|
||||
**When to use which?**
|
||||
- **unilabos**: Standard installation for production deployment and general usage (recommended)
|
||||
- **unilabos-env**: For developers who need `pip install -e .` editable mode, modify source code
|
||||
- **unilabos-full**: For simulation (Gazebo), visualization (rviz2), and Jupyter notebooks
|
||||
|
||||
### 2. Clone Repository (Optional, for developers)
|
||||
|
||||
```bash
|
||||
# Clone the repository
|
||||
# Clone the repository (only needed for development or examples)
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
cd Uni-Lab-OS
|
||||
|
||||
# Install Uni-Lab-OS
|
||||
pip install .
|
||||
```
|
||||
|
||||
3. Start Uni-Lab System
|
||||
|
||||
38
README_zh.md
38
README_zh.md
@@ -31,26 +31,46 @@ Uni-Lab-OS 是一个用于实验室自动化的综合平台,旨在连接和控
|
||||
|
||||
## 快速开始
|
||||
|
||||
1. 配置 Conda 环境
|
||||
### 1. 配置 Conda 环境
|
||||
|
||||
Uni-Lab-OS 建议使用 `mamba` 管理环境。根据您的操作系统选择适当的环境文件:
|
||||
Uni-Lab-OS 建议使用 `mamba` 管理环境。根据您的需求选择合适的安装包:
|
||||
|
||||
| 安装包 | 适用场景 | 包含内容 |
|
||||
|--------|----------|----------|
|
||||
| `unilabos` | **推荐大多数用户** | 完整安装包,开箱即用 |
|
||||
| `unilabos-env` | 开发者(可编辑安装) | 仅环境依赖,通过 pip 安装 unilabos |
|
||||
| `unilabos-full` | 仿真/可视化 | unilabos + ROS2 桌面版 + Gazebo + MoveIt |
|
||||
|
||||
```bash
|
||||
# 创建新环境
|
||||
mamba create -n unilab python=3.11.11
|
||||
mamba create -n unilab python=3.11.14
|
||||
mamba activate unilab
|
||||
mamba install -n unilab uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# 方案 A:标准安装(推荐大多数用户)
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# 方案 B:开发者环境(可编辑模式开发)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
# 然后安装 unilabos 和依赖:
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git && cd Uni-Lab-OS
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
|
||||
# 方案 C:完整安装(仿真/可视化)
|
||||
mamba install uni-lab::unilabos-full -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
2. 安装开发版 Uni-Lab-OS:
|
||||
**如何选择?**
|
||||
- **unilabos**:标准安装,适用于生产部署和日常使用(推荐)
|
||||
- **unilabos-env**:开发者使用,支持 `pip install -e .` 可编辑模式,可修改源代码
|
||||
- **unilabos-full**:需要仿真(Gazebo)、可视化(rviz2)或 Jupyter Notebook
|
||||
|
||||
### 2. 克隆仓库(可选,供开发者使用)
|
||||
|
||||
```bash
|
||||
# 克隆仓库
|
||||
# 克隆仓库(仅开发或查看示例时需要)
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
cd Uni-Lab-OS
|
||||
|
||||
# 安装 Uni-Lab-OS
|
||||
pip install .
|
||||
```
|
||||
|
||||
3. 启动 Uni-Lab 系统
|
||||
|
||||
@@ -31,6 +31,14 @@
|
||||
|
||||
详细的安装步骤请参考 [安装指南](installation.md)。
|
||||
|
||||
**选择合适的安装包:**
|
||||
|
||||
| 安装包 | 适用场景 | 包含组件 |
|
||||
|--------|----------|----------|
|
||||
| `unilabos` | **推荐大多数用户**,生产部署 | 完整安装包,开箱即用 |
|
||||
| `unilabos-env` | 开发者(可编辑安装) | 仅环境依赖,通过 pip 安装 unilabos |
|
||||
| `unilabos-full` | 仿真/可视化 | unilabos + 完整 ROS2 桌面版 + Gazebo + MoveIt |
|
||||
|
||||
**关键步骤:**
|
||||
|
||||
```bash
|
||||
@@ -38,15 +46,30 @@
|
||||
# 下载 Miniforge: https://github.com/conda-forge/miniforge/releases
|
||||
|
||||
# 2. 创建 Conda 环境
|
||||
mamba create -n unilab python=3.11.11
|
||||
mamba create -n unilab python=3.11.14
|
||||
|
||||
# 3. 激活环境
|
||||
mamba activate unilab
|
||||
|
||||
# 4. 安装 Uni-Lab-OS
|
||||
# 4. 安装 Uni-Lab-OS(选择其一)
|
||||
|
||||
# 方案 A:标准安装(推荐大多数用户)
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# 方案 B:开发者环境(可编辑模式开发)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
pip install -e /path/to/Uni-Lab-OS # 可编辑安装
|
||||
uv pip install -r unilabos/utils/requirements.txt # 安装 pip 依赖
|
||||
|
||||
# 方案 C:完整版(仿真/可视化)
|
||||
mamba install uni-lab::unilabos-full -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
**选择建议:**
|
||||
- **日常使用/生产部署**:使用 `unilabos`(推荐),完整功能,开箱即用
|
||||
- **开发者**:使用 `unilabos-env` + `pip install -e .` + `uv pip install -r unilabos/utils/requirements.txt`,代码修改立即生效
|
||||
- **仿真/可视化**:使用 `unilabos-full`,含 Gazebo、rviz2、MoveIt
|
||||
|
||||
#### 1.2 验证安装
|
||||
|
||||
```bash
|
||||
@@ -768,7 +791,43 @@ Waiting for host service...
|
||||
|
||||
详细的设备驱动编写指南请参考 [添加设备驱动](../developer_guide/add_device.md)。
|
||||
|
||||
#### 9.1 为什么需要自定义设备?
|
||||
#### 9.1 开发环境准备
|
||||
|
||||
**推荐使用 `unilabos-env` + `pip install -e .` + `uv pip install`** 进行设备开发:
|
||||
|
||||
```bash
|
||||
# 1. 创建环境并安装 unilabos-env(ROS2 + conda 依赖 + uv)
|
||||
mamba create -n unilab python=3.11.14
|
||||
conda activate unilab
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
|
||||
# 2. 克隆代码
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
cd Uni-Lab-OS
|
||||
|
||||
# 3. 以可编辑模式安装(推荐使用脚本,自动检测中文环境)
|
||||
python scripts/dev_install.py
|
||||
|
||||
# 或手动安装:
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
```
|
||||
|
||||
**为什么使用这种方式?**
|
||||
- `unilabos-env` 提供 ROS2 核心组件和 uv(通过 conda 安装,避免编译)
|
||||
- `unilabos/utils/requirements.txt` 包含所有运行时需要的 pip 依赖
|
||||
- `dev_install.py` 自动检测中文环境,中文系统自动使用清华镜像
|
||||
- 使用 `uv` 替代 `pip`,安装速度更快
|
||||
- 可编辑模式:代码修改**立即生效**,无需重新安装
|
||||
|
||||
**如果安装失败或速度太慢**,可以手动执行(使用清华镜像):
|
||||
|
||||
```bash
|
||||
pip install -e . -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
uv pip install -r unilabos/utils/requirements.txt -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
```
|
||||
|
||||
#### 9.2 为什么需要自定义设备?
|
||||
|
||||
Uni-Lab-OS 内置了常见设备,但您的实验室可能有特殊设备需要集成:
|
||||
|
||||
@@ -777,7 +836,7 @@ Uni-Lab-OS 内置了常见设备,但您的实验室可能有特殊设备需要
|
||||
- 特殊的实验流程
|
||||
- 第三方设备集成
|
||||
|
||||
#### 9.2 创建 Python 包
|
||||
#### 9.3 创建 Python 包
|
||||
|
||||
为了方便开发和管理,建议为您的实验室创建独立的 Python 包。
|
||||
|
||||
@@ -814,7 +873,7 @@ touch my_lab_devices/my_lab_devices/__init__.py
|
||||
touch my_lab_devices/my_lab_devices/devices/__init__.py
|
||||
```
|
||||
|
||||
#### 9.3 创建 setup.py
|
||||
#### 9.4 创建 setup.py
|
||||
|
||||
```python
|
||||
# my_lab_devices/setup.py
|
||||
@@ -845,7 +904,7 @@ setup(
|
||||
)
|
||||
```
|
||||
|
||||
#### 9.4 开发安装
|
||||
#### 9.5 开发安装
|
||||
|
||||
使用 `-e` 参数进行可编辑安装,这样代码修改后立即生效:
|
||||
|
||||
@@ -860,7 +919,7 @@ pip install -e . -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
- 方便调试和测试
|
||||
- 支持版本控制(git)
|
||||
|
||||
#### 9.5 编写设备驱动
|
||||
#### 9.6 编写设备驱动
|
||||
|
||||
创建设备驱动文件:
|
||||
|
||||
@@ -1001,7 +1060,7 @@ class MyPump:
|
||||
- **返回 Dict**:所有动作方法返回字典类型
|
||||
- **文档字符串**:详细说明参数和功能
|
||||
|
||||
#### 9.6 测试设备驱动
|
||||
#### 9.7 测试设备驱动
|
||||
|
||||
创建简单的测试脚本:
|
||||
|
||||
|
||||
@@ -13,15 +13,26 @@
|
||||
- 开发者需要 Git 和基本的 Python 开发知识
|
||||
- 自定义 msgs 需要 GitHub 账号
|
||||
|
||||
## 安装包选择
|
||||
|
||||
Uni-Lab-OS 提供三个安装包版本,根据您的需求选择:
|
||||
|
||||
| 安装包 | 适用场景 | 包含组件 | 磁盘占用 |
|
||||
|--------|----------|----------|----------|
|
||||
| **unilabos** | **推荐大多数用户**,生产部署 | 完整安装包,开箱即用 | ~2-3 GB |
|
||||
| **unilabos-env** | 开发者环境(可编辑安装) | 仅环境依赖,通过 pip 安装 unilabos | ~2 GB |
|
||||
| **unilabos-full** | 仿真可视化、完整功能体验 | unilabos + 完整 ROS2 桌面版 + Gazebo + MoveIt | ~8-10 GB |
|
||||
|
||||
## 安装方式选择
|
||||
|
||||
根据您的使用场景,选择合适的安装方式:
|
||||
|
||||
| 安装方式 | 适用人群 | 特点 | 安装时间 |
|
||||
| ---------------------- | -------------------- | ------------------------------ | ---------------------------- |
|
||||
| **方式一:一键安装** | 实验室用户、快速体验 | 预打包环境,离线可用,无需配置 | 5-10 分钟 (网络良好的情况下) |
|
||||
| **方式二:手动安装** | 标准用户、生产环境 | 灵活配置,版本可控 | 10-20 分钟 |
|
||||
| **方式三:开发者安装** | 开发者、需要修改源码 | 可编辑模式,支持自定义 msgs | 20-30 分钟 |
|
||||
| 安装方式 | 适用人群 | 推荐安装包 | 特点 | 安装时间 |
|
||||
| ---------------------- | -------------------- | ----------------- | ------------------------------ | ---------------------------- |
|
||||
| **方式一:一键安装** | 快速体验、演示 | 预打包环境 | 离线可用,无需配置 | 5-10 分钟 (网络良好的情况下) |
|
||||
| **方式二:手动安装** | **大多数用户** | `unilabos` | 完整功能,开箱即用 | 10-20 分钟 |
|
||||
| **方式三:开发者安装** | 开发者、需要修改源码 | `unilabos-env` | 可编辑模式,支持自定义开发 | 20-30 分钟 |
|
||||
| **仿真/可视化** | 仿真测试、可视化调试 | `unilabos-full` | 含 Gazebo、rviz2、MoveIt | 30-60 分钟 |
|
||||
|
||||
---
|
||||
|
||||
@@ -144,17 +155,38 @@ bash Miniforge3-$(uname)-$(uname -m).sh
|
||||
使用以下命令创建 Uni-Lab 专用环境:
|
||||
|
||||
```bash
|
||||
mamba create -n unilab python=3.11.11 # 目前ros2组件依赖版本大多为3.11.11
|
||||
mamba create -n unilab python=3.11.14 # 目前ros2组件依赖版本大多为3.11.14
|
||||
mamba activate unilab
|
||||
mamba install -n unilab uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# 选择安装包(三选一):
|
||||
|
||||
# 方案 A:标准安装(推荐大多数用户)
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
|
||||
# 方案 B:开发者环境(可编辑模式开发)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
# 然后安装 unilabos 和 pip 依赖:
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git && cd Uni-Lab-OS
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
|
||||
# 方案 C:完整版(含仿真和可视化工具)
|
||||
mamba install uni-lab::unilabos-full -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
**参数说明**:
|
||||
|
||||
- `-n unilab`: 创建名为 "unilab" 的环境
|
||||
- `uni-lab::unilabos`: 从 uni-lab channel 安装 unilabos 包
|
||||
- `uni-lab::unilabos`: 安装 unilabos 完整包,开箱即用(推荐)
|
||||
- `uni-lab::unilabos-env`: 仅安装环境依赖,适合开发者使用 `pip install -e .`
|
||||
- `uni-lab::unilabos-full`: 安装完整包(含 ROS2 Desktop、Gazebo、MoveIt 等)
|
||||
- `-c robostack-staging -c conda-forge`: 添加额外的软件源
|
||||
|
||||
**包选择建议**:
|
||||
- **日常使用/生产部署**:安装 `unilabos`(推荐,完整功能,开箱即用)
|
||||
- **开发者**:安装 `unilabos-env`,然后使用 `uv pip install -r unilabos/utils/requirements.txt` 安装依赖,再 `pip install -e .` 进行可编辑安装
|
||||
- **仿真/可视化**:安装 `unilabos-full`(Gazebo、rviz2、MoveIt)
|
||||
|
||||
**如果遇到网络问题**,可以使用清华镜像源加速下载:
|
||||
|
||||
```bash
|
||||
@@ -163,8 +195,14 @@ mamba config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/m
|
||||
mamba config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
|
||||
mamba config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
|
||||
|
||||
# 然后重新执行安装命令
|
||||
# 然后重新执行安装命令(推荐标准安装)
|
||||
mamba create -n unilab uni-lab::unilabos -c robostack-staging
|
||||
|
||||
# 或完整版(仿真/可视化)
|
||||
mamba create -n unilab uni-lab::unilabos-full -c robostack-staging
|
||||
|
||||
# pip 安装时使用清华镜像(开发者安装时使用)
|
||||
uv pip install -r unilabos/utils/requirements.txt -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
```
|
||||
|
||||
### 第三步:激活环境
|
||||
@@ -203,58 +241,87 @@ cd Uni-Lab-OS
|
||||
cd Uni-Lab-OS
|
||||
```
|
||||
|
||||
### 第二步:安装基础环境
|
||||
### 第二步:安装开发环境(unilabos-env)
|
||||
|
||||
**推荐方式**:先通过**方式一(一键安装)**或**方式二(手动安装)**完成基础环境的安装,这将包含所有必需的依赖项(ROS2、msgs 等)。
|
||||
|
||||
#### 选项 A:通过一键安装(推荐)
|
||||
|
||||
参考上文"方式一:一键安装",完成基础环境的安装后,激活环境:
|
||||
**重要**:开发者请使用 `unilabos-env` 包,它专为开发者设计:
|
||||
- 包含 ROS2 核心组件和消息包(ros-humble-ros-core、std-msgs、geometry-msgs 等)
|
||||
- 包含 transforms3d、cv-bridge、tf2 等 conda 依赖
|
||||
- 包含 `uv` 工具,用于快速安装 pip 依赖
|
||||
- **不包含** pip 依赖和 unilabos 包(由 `pip install -e .` 和 `uv pip install` 安装)
|
||||
|
||||
```bash
|
||||
# 创建并激活环境
|
||||
mamba create -n unilab python=3.11.14
|
||||
conda activate unilab
|
||||
|
||||
# 安装开发者环境包(ROS2 + conda 依赖 + uv)
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
#### 选项 B:通过手动安装
|
||||
### 第三步:安装 pip 依赖和可编辑模式安装
|
||||
|
||||
参考上文"方式二:手动安装",创建并安装环境:
|
||||
|
||||
```bash
|
||||
mamba create -n unilab python=3.11.11
|
||||
conda activate unilab
|
||||
mamba install -n unilab uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
```
|
||||
|
||||
**说明**:这会安装包括 Python 3.11.11、ROS2 Humble、ros-humble-unilabos-msgs 和所有必需依赖
|
||||
|
||||
### 第三步:切换到开发版本
|
||||
|
||||
现在你已经有了一个完整可用的 Uni-Lab 环境,接下来将 unilabos 包切换为开发版本:
|
||||
克隆代码并安装依赖:
|
||||
|
||||
```bash
|
||||
# 确保环境已激活
|
||||
conda activate unilab
|
||||
|
||||
# 卸载 pip 安装的 unilabos(保留所有 conda 依赖)
|
||||
pip uninstall unilabos -y
|
||||
|
||||
# 克隆 dev 分支(如果还未克隆)
|
||||
cd /path/to/your/workspace
|
||||
git clone -b dev https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
# 或者如果已经克隆,切换到 dev 分支
|
||||
# 克隆仓库(如果还未克隆)
|
||||
git clone https://github.com/deepmodeling/Uni-Lab-OS.git
|
||||
cd Uni-Lab-OS
|
||||
|
||||
# 切换到 dev 分支(可选)
|
||||
git checkout dev
|
||||
git pull
|
||||
|
||||
# 以可编辑模式安装开发版 unilabos
|
||||
pip install -e . -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
```
|
||||
|
||||
**参数说明**:
|
||||
**推荐:使用安装脚本**(自动检测中文环境,使用 uv 加速):
|
||||
|
||||
- `-e`: editable mode(可编辑模式),代码修改立即生效,无需重新安装
|
||||
- `-i`: 使用清华镜像源加速下载
|
||||
- `pip uninstall unilabos`: 只卸载 pip 安装的 unilabos 包,不影响 conda 安装的其他依赖(如 ROS2、msgs 等)
|
||||
```bash
|
||||
# 自动检测中文环境,如果是中文系统则使用清华镜像
|
||||
python scripts/dev_install.py
|
||||
|
||||
# 或者手动指定:
|
||||
python scripts/dev_install.py --china # 强制使用清华镜像
|
||||
python scripts/dev_install.py --no-mirror # 强制使用 PyPI
|
||||
python scripts/dev_install.py --skip-deps # 跳过 pip 依赖安装
|
||||
python scripts/dev_install.py --use-pip # 使用 pip 而非 uv
|
||||
```
|
||||
|
||||
**手动安装**(如果脚本安装失败或速度太慢):
|
||||
|
||||
```bash
|
||||
# 1. 安装 unilabos(可编辑模式)
|
||||
pip install -e .
|
||||
|
||||
# 2. 使用 uv 安装 pip 依赖(推荐,速度更快)
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
|
||||
# 国内用户使用清华镜像:
|
||||
pip install -e . -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
uv pip install -r unilabos/utils/requirements.txt -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple
|
||||
```
|
||||
|
||||
**注意**:
|
||||
- `uv` 已包含在 `unilabos-env` 中,无需单独安装
|
||||
- `unilabos/utils/requirements.txt` 包含运行 unilabos 所需的所有 pip 依赖
|
||||
- 部分特殊包(如 pylabrobot)会在运行时由 unilabos 自动检测并安装
|
||||
|
||||
**为什么使用可编辑模式?**
|
||||
|
||||
- `-e` (editable mode):代码修改**立即生效**,无需重新安装
|
||||
- 适合开发调试:修改代码后直接运行测试
|
||||
- 与 `unilabos-env` 配合:环境依赖由 conda 管理,unilabos 代码由 pip 管理
|
||||
|
||||
**验证安装**:
|
||||
|
||||
```bash
|
||||
# 检查 unilabos 版本
|
||||
python -c "import unilabos; print(unilabos.__version__)"
|
||||
|
||||
# 检查安装位置(应该指向你的代码目录)
|
||||
pip show unilabos | grep Location
|
||||
```
|
||||
|
||||
### 第四步:安装或自定义 ros-humble-unilabos-msgs(可选)
|
||||
|
||||
@@ -464,7 +531,45 @@ cd $CONDA_PREFIX/envs/unilab
|
||||
|
||||
### 问题 8: 环境很大,有办法减小吗?
|
||||
|
||||
**解决方案**: 预打包的环境包含所有依赖,通常较大(压缩后 2-5GB)。这是为了确保离线安装和完整功能。如果空间有限,考虑使用方式二手动安装,只安装需要的组件。
|
||||
**解决方案**:
|
||||
|
||||
1. **使用 `unilabos` 标准版**(推荐大多数用户):
|
||||
```bash
|
||||
mamba install uni-lab::unilabos -c robostack-staging -c conda-forge
|
||||
```
|
||||
标准版包含完整功能,环境大小约 2-3GB(相比完整版的 8-10GB)。
|
||||
|
||||
2. **使用 `unilabos-env` 开发者版**(最小化):
|
||||
```bash
|
||||
mamba install uni-lab::unilabos-env -c robostack-staging -c conda-forge
|
||||
# 然后手动安装依赖
|
||||
pip install -e .
|
||||
uv pip install -r unilabos/utils/requirements.txt
|
||||
```
|
||||
开发者版只包含环境依赖,体积最小约 2GB。
|
||||
|
||||
3. **按需安装额外组件**:
|
||||
如果后续需要特定功能,可以单独安装:
|
||||
```bash
|
||||
# 需要 Jupyter
|
||||
mamba install jupyter jupyros
|
||||
|
||||
# 需要可视化
|
||||
mamba install matplotlib opencv
|
||||
|
||||
# 需要仿真(注意:这会安装大量依赖)
|
||||
mamba install ros-humble-gazebo-ros
|
||||
```
|
||||
|
||||
4. **预打包环境问题**:
|
||||
预打包环境(方式一)包含所有依赖,通常较大(压缩后 2-5GB)。这是为了确保离线安装和完整功能。
|
||||
|
||||
**包选择建议**:
|
||||
| 需求 | 推荐包 | 预估大小 |
|
||||
|------|--------|----------|
|
||||
| 日常使用/生产部署 | `unilabos` | ~2-3 GB |
|
||||
| 开发调试(可编辑模式) | `unilabos-env` | ~2 GB |
|
||||
| 仿真/可视化 | `unilabos-full` | ~8-10 GB |
|
||||
|
||||
### 问题 9: 如何更新到最新版本?
|
||||
|
||||
@@ -511,6 +616,7 @@ mamba update ros-humble-unilabos-msgs -c uni-lab -c robostack-staging -c conda-f
|
||||
|
||||
**提示**:
|
||||
|
||||
- 生产环境推荐使用方式二(手动安装)的稳定版本
|
||||
- 开发和测试推荐使用方式三(开发者安装)
|
||||
- 快速体验和演示推荐使用方式一(一键安装)
|
||||
- **大多数用户**推荐使用方式二(手动安装)的 `unilabos` 标准版
|
||||
- **开发者**推荐使用方式三(开发者安装),安装 `unilabos-env` 后使用 `uv pip install -r unilabos/utils/requirements.txt` 安装依赖
|
||||
- **仿真/可视化**推荐安装 `unilabos-full` 完整版
|
||||
- **快速体验和演示**推荐使用方式一(一键安装)
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
package:
|
||||
name: ros-humble-unilabos-msgs
|
||||
version: 0.10.15
|
||||
version: 0.10.17
|
||||
source:
|
||||
path: ../../unilabos_msgs
|
||||
target_directory: src
|
||||
@@ -25,7 +25,7 @@ requirements:
|
||||
build:
|
||||
- ${{ compiler('cxx') }}
|
||||
- ${{ compiler('c') }}
|
||||
- python ==3.11.11
|
||||
- python ==3.11.14
|
||||
- numpy
|
||||
- if: build_platform != target_platform
|
||||
then:
|
||||
@@ -63,14 +63,14 @@ requirements:
|
||||
- robostack-staging::ros-humble-rosidl-default-generators
|
||||
- robostack-staging::ros-humble-std-msgs
|
||||
- robostack-staging::ros-humble-geometry-msgs
|
||||
- robostack-staging::ros2-distro-mutex=0.6
|
||||
- robostack-staging::ros2-distro-mutex=0.7
|
||||
run:
|
||||
- robostack-staging::ros-humble-action-msgs
|
||||
- robostack-staging::ros-humble-ros-workspace
|
||||
- robostack-staging::ros-humble-rosidl-default-runtime
|
||||
- robostack-staging::ros-humble-std-msgs
|
||||
- robostack-staging::ros-humble-geometry-msgs
|
||||
- robostack-staging::ros2-distro-mutex=0.6
|
||||
- robostack-staging::ros2-distro-mutex=0.7
|
||||
- if: osx and x86_64
|
||||
then:
|
||||
- __osx >=${{ MACOSX_DEPLOYMENT_TARGET|default('10.14') }}
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
package:
|
||||
name: unilabos
|
||||
version: "0.10.15"
|
||||
version: "0.10.17"
|
||||
|
||||
source:
|
||||
path: ../..
|
||||
|
||||
@@ -85,7 +85,7 @@ Verification:
|
||||
-------------
|
||||
|
||||
The verify_installation.py script will check:
|
||||
- Python version (3.11.11)
|
||||
- Python version (3.11.14)
|
||||
- ROS2 rclpy installation
|
||||
- UniLabOS installation and dependencies
|
||||
|
||||
@@ -104,7 +104,7 @@ Build Information:
|
||||
|
||||
Branch: {branch}
|
||||
Platform: {platform}
|
||||
Python: 3.11.11
|
||||
Python: 3.11.14
|
||||
Date: {build_date}
|
||||
|
||||
Troubleshooting:
|
||||
|
||||
214
scripts/dev_install.py
Normal file
214
scripts/dev_install.py
Normal file
@@ -0,0 +1,214 @@
|
||||
#!/usr/bin/env python3
|
||||
"""
|
||||
Development installation script for UniLabOS.
|
||||
Auto-detects Chinese locale and uses appropriate mirror.
|
||||
|
||||
Usage:
|
||||
python scripts/dev_install.py
|
||||
python scripts/dev_install.py --no-mirror # Force no mirror
|
||||
python scripts/dev_install.py --china # Force China mirror
|
||||
python scripts/dev_install.py --skip-deps # Skip pip dependencies installation
|
||||
|
||||
Flow:
|
||||
1. pip install -e . (install unilabos in editable mode)
|
||||
2. Detect Chinese locale
|
||||
3. Use uv to install pip dependencies from requirements.txt
|
||||
4. Special packages (like pylabrobot) are handled by environment_check.py at runtime
|
||||
"""
|
||||
|
||||
import locale
|
||||
import subprocess
|
||||
import sys
|
||||
import argparse
|
||||
from pathlib import Path
|
||||
|
||||
# Tsinghua mirror URL
|
||||
TSINGHUA_MIRROR = "https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple"
|
||||
|
||||
|
||||
def is_chinese_locale() -> bool:
|
||||
"""
|
||||
Detect if system is in Chinese locale.
|
||||
Same logic as EnvironmentChecker._is_chinese_locale()
|
||||
"""
|
||||
try:
|
||||
lang = locale.getdefaultlocale()[0]
|
||||
if lang and ("zh" in lang.lower() or "chinese" in lang.lower()):
|
||||
return True
|
||||
except Exception:
|
||||
pass
|
||||
return False
|
||||
|
||||
|
||||
def run_command(cmd: list, description: str, retry: int = 2) -> bool:
|
||||
"""Run command with retry support."""
|
||||
print(f"[INFO] {description}")
|
||||
print(f"[CMD] {' '.join(cmd)}")
|
||||
|
||||
for attempt in range(retry + 1):
|
||||
try:
|
||||
result = subprocess.run(cmd, check=True, timeout=600)
|
||||
print(f"[OK] {description}")
|
||||
return True
|
||||
except subprocess.CalledProcessError as e:
|
||||
if attempt < retry:
|
||||
print(f"[WARN] Attempt {attempt + 1} failed, retrying...")
|
||||
else:
|
||||
print(f"[ERROR] {description} failed: {e}")
|
||||
return False
|
||||
except subprocess.TimeoutExpired:
|
||||
print(f"[ERROR] {description} timed out")
|
||||
return False
|
||||
return False
|
||||
|
||||
|
||||
def install_editable(project_root: Path, use_mirror: bool) -> bool:
|
||||
"""Install unilabos in editable mode using pip."""
|
||||
cmd = [sys.executable, "-m", "pip", "install", "-e", str(project_root)]
|
||||
if use_mirror:
|
||||
cmd.extend(["-i", TSINGHUA_MIRROR])
|
||||
|
||||
return run_command(cmd, "Installing unilabos in editable mode")
|
||||
|
||||
|
||||
def install_requirements_uv(requirements_file: Path, use_mirror: bool) -> bool:
|
||||
"""Install pip dependencies using uv (installed via conda-forge::uv)."""
|
||||
cmd = ["uv", "pip", "install", "-r", str(requirements_file)]
|
||||
if use_mirror:
|
||||
cmd.extend(["-i", TSINGHUA_MIRROR])
|
||||
|
||||
return run_command(cmd, "Installing pip dependencies with uv", retry=2)
|
||||
|
||||
|
||||
def install_requirements_pip(requirements_file: Path, use_mirror: bool) -> bool:
|
||||
"""Fallback: Install pip dependencies using pip."""
|
||||
cmd = [sys.executable, "-m", "pip", "install", "-r", str(requirements_file)]
|
||||
if use_mirror:
|
||||
cmd.extend(["-i", TSINGHUA_MIRROR])
|
||||
|
||||
return run_command(cmd, "Installing pip dependencies with pip", retry=2)
|
||||
|
||||
|
||||
def check_uv_available() -> bool:
|
||||
"""Check if uv is available (installed via conda-forge::uv)."""
|
||||
try:
|
||||
subprocess.run(["uv", "--version"], capture_output=True, check=True)
|
||||
return True
|
||||
except (subprocess.CalledProcessError, FileNotFoundError):
|
||||
return False
|
||||
|
||||
|
||||
def main():
|
||||
parser = argparse.ArgumentParser(description="Development installation script for UniLabOS")
|
||||
parser.add_argument("--china", action="store_true", help="Force use China mirror (Tsinghua)")
|
||||
parser.add_argument("--no-mirror", action="store_true", help="Force use default PyPI (no mirror)")
|
||||
parser.add_argument(
|
||||
"--skip-deps", action="store_true", help="Skip pip dependencies installation (only install unilabos)"
|
||||
)
|
||||
parser.add_argument("--use-pip", action="store_true", help="Use pip instead of uv for dependencies")
|
||||
args = parser.parse_args()
|
||||
|
||||
# Determine project root
|
||||
script_dir = Path(__file__).parent
|
||||
project_root = script_dir.parent
|
||||
requirements_file = project_root / "unilabos" / "utils" / "requirements.txt"
|
||||
|
||||
if not (project_root / "setup.py").exists():
|
||||
print(f"[ERROR] setup.py not found in {project_root}")
|
||||
sys.exit(1)
|
||||
|
||||
print("=" * 60)
|
||||
print("UniLabOS Development Installation")
|
||||
print("=" * 60)
|
||||
print(f"Project root: {project_root}")
|
||||
print()
|
||||
|
||||
# Determine mirror usage based on locale
|
||||
if args.no_mirror:
|
||||
use_mirror = False
|
||||
print("[INFO] Mirror disabled by --no-mirror flag")
|
||||
elif args.china:
|
||||
use_mirror = True
|
||||
print("[INFO] China mirror enabled by --china flag")
|
||||
else:
|
||||
use_mirror = is_chinese_locale()
|
||||
if use_mirror:
|
||||
print("[INFO] Chinese locale detected, using Tsinghua mirror")
|
||||
else:
|
||||
print("[INFO] Non-Chinese locale detected, using default PyPI")
|
||||
|
||||
print()
|
||||
|
||||
# Step 1: Install unilabos in editable mode
|
||||
print("[STEP 1] Installing unilabos in editable mode...")
|
||||
if not install_editable(project_root, use_mirror):
|
||||
print("[ERROR] Failed to install unilabos")
|
||||
print()
|
||||
print("Manual fallback:")
|
||||
if use_mirror:
|
||||
print(f" pip install -e {project_root} -i {TSINGHUA_MIRROR}")
|
||||
else:
|
||||
print(f" pip install -e {project_root}")
|
||||
sys.exit(1)
|
||||
|
||||
print()
|
||||
|
||||
# Step 2: Install pip dependencies
|
||||
if args.skip_deps:
|
||||
print("[INFO] Skipping pip dependencies installation (--skip-deps)")
|
||||
else:
|
||||
print("[STEP 2] Installing pip dependencies...")
|
||||
|
||||
if not requirements_file.exists():
|
||||
print(f"[WARN] Requirements file not found: {requirements_file}")
|
||||
print("[INFO] Skipping dependencies installation")
|
||||
else:
|
||||
# Try uv first (faster), fallback to pip
|
||||
if args.use_pip:
|
||||
print("[INFO] Using pip (--use-pip flag)")
|
||||
success = install_requirements_pip(requirements_file, use_mirror)
|
||||
elif check_uv_available():
|
||||
print("[INFO] Using uv (installed via conda-forge::uv)")
|
||||
success = install_requirements_uv(requirements_file, use_mirror)
|
||||
if not success:
|
||||
print("[WARN] uv failed, falling back to pip...")
|
||||
success = install_requirements_pip(requirements_file, use_mirror)
|
||||
else:
|
||||
print("[WARN] uv not available (should be installed via: mamba install conda-forge::uv)")
|
||||
print("[INFO] Falling back to pip...")
|
||||
success = install_requirements_pip(requirements_file, use_mirror)
|
||||
|
||||
if not success:
|
||||
print()
|
||||
print("[WARN] Failed to install some dependencies automatically.")
|
||||
print("You can manually install them:")
|
||||
if use_mirror:
|
||||
print(f" uv pip install -r {requirements_file} -i {TSINGHUA_MIRROR}")
|
||||
print(" or:")
|
||||
print(f" pip install -r {requirements_file} -i {TSINGHUA_MIRROR}")
|
||||
else:
|
||||
print(f" uv pip install -r {requirements_file}")
|
||||
print(" or:")
|
||||
print(f" pip install -r {requirements_file}")
|
||||
|
||||
print()
|
||||
print("=" * 60)
|
||||
print("Installation complete!")
|
||||
print("=" * 60)
|
||||
print()
|
||||
print("Note: Some special packages (like pylabrobot) are installed")
|
||||
print("automatically at runtime by unilabos if needed.")
|
||||
print()
|
||||
print("Verify installation:")
|
||||
print(' python -c "import unilabos; print(unilabos.__version__)"')
|
||||
print()
|
||||
print("If you encounter issues, you can manually install dependencies:")
|
||||
if use_mirror:
|
||||
print(f" uv pip install -r unilabos/utils/requirements.txt -i {TSINGHUA_MIRROR}")
|
||||
else:
|
||||
print(" uv pip install -r unilabos/utils/requirements.txt")
|
||||
print()
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
main()
|
||||
2
setup.py
2
setup.py
@@ -4,7 +4,7 @@ package_name = 'unilabos'
|
||||
|
||||
setup(
|
||||
name=package_name,
|
||||
version='0.10.15',
|
||||
version='0.10.17',
|
||||
packages=find_packages(),
|
||||
include_package_data=True,
|
||||
install_requires=['setuptools'],
|
||||
|
||||
15
tests/devices/liquid_handling/README.md
Normal file
15
tests/devices/liquid_handling/README.md
Normal file
@@ -0,0 +1,15 @@
|
||||
# Liquid handling 集成测试
|
||||
|
||||
`test_transfer_liquid.py` 现在会调用 PRCXI 的 RViz 仿真 backend,运行前请确保:
|
||||
|
||||
1. 已安装包含 `pylabrobot`、`rclpy` 的运行环境;
|
||||
2. 启动 ROS 依赖(`rviz` 可选,但是 `rviz_backend` 会创建 ROS 节点);
|
||||
3. 在 shell 中设置 `UNILAB_SIM_TEST=1`,否则 pytest 会自动跳过这些慢速用例:
|
||||
|
||||
```bash
|
||||
export UNILAB_SIM_TEST=1
|
||||
pytest tests/devices/liquid_handling/test_transfer_liquid.py -m slow
|
||||
```
|
||||
|
||||
如果只需验证逻辑层(不依赖仿真),可以直接运行 `tests/devices/liquid_handling/unit_test.py`,该文件使用 Fake backend,适合作为 CI 的快速测试。***
|
||||
|
||||
547
tests/devices/liquid_handling/unit_test.py
Normal file
547
tests/devices/liquid_handling/unit_test.py
Normal file
@@ -0,0 +1,547 @@
|
||||
import asyncio
|
||||
from dataclasses import dataclass
|
||||
from typing import Any, Iterable, List, Optional, Sequence, Tuple
|
||||
|
||||
import pytest
|
||||
|
||||
from unilabos.devices.liquid_handling.liquid_handler_abstract import LiquidHandlerAbstract
|
||||
|
||||
|
||||
@dataclass(frozen=True)
|
||||
class DummyContainer:
|
||||
name: str
|
||||
|
||||
def __repr__(self) -> str: # pragma: no cover
|
||||
return f"DummyContainer({self.name})"
|
||||
|
||||
|
||||
@dataclass(frozen=True)
|
||||
class DummyTipSpot:
|
||||
name: str
|
||||
|
||||
def __repr__(self) -> str: # pragma: no cover
|
||||
return f"DummyTipSpot({self.name})"
|
||||
|
||||
|
||||
def make_tip_iter(n: int = 256) -> Iterable[List[DummyTipSpot]]:
|
||||
"""Yield lists so code can safely call `tip.extend(next(self.current_tip))`."""
|
||||
for i in range(n):
|
||||
yield [DummyTipSpot(f"tip_{i}")]
|
||||
|
||||
|
||||
class FakeLiquidHandler(LiquidHandlerAbstract):
|
||||
"""不初始化真实 backend/deck;仅用来记录 transfer_liquid 内部调用序列。"""
|
||||
|
||||
def __init__(self, channel_num: int = 8):
|
||||
# 不调用 super().__init__,避免真实硬件/后端依赖
|
||||
self.channel_num = channel_num
|
||||
self.support_touch_tip = True
|
||||
self.current_tip = iter(make_tip_iter())
|
||||
self.calls: List[Tuple[str, Any]] = []
|
||||
|
||||
async def pick_up_tips(self, tip_spots, use_channels=None, offsets=None, **backend_kwargs):
|
||||
self.calls.append(("pick_up_tips", {"tips": list(tip_spots), "use_channels": use_channels}))
|
||||
|
||||
async def aspirate(
|
||||
self,
|
||||
resources: Sequence[Any],
|
||||
vols: List[float],
|
||||
use_channels: Optional[List[int]] = None,
|
||||
flow_rates: Optional[List[Optional[float]]] = None,
|
||||
offsets: Any = None,
|
||||
liquid_height: Any = None,
|
||||
blow_out_air_volume: Any = None,
|
||||
spread: str = "wide",
|
||||
**backend_kwargs,
|
||||
):
|
||||
self.calls.append(
|
||||
(
|
||||
"aspirate",
|
||||
{
|
||||
"resources": list(resources),
|
||||
"vols": list(vols),
|
||||
"use_channels": list(use_channels) if use_channels is not None else None,
|
||||
"flow_rates": list(flow_rates) if flow_rates is not None else None,
|
||||
"offsets": list(offsets) if offsets is not None else None,
|
||||
"liquid_height": list(liquid_height) if liquid_height is not None else None,
|
||||
"blow_out_air_volume": list(blow_out_air_volume) if blow_out_air_volume is not None else None,
|
||||
},
|
||||
)
|
||||
)
|
||||
|
||||
async def dispense(
|
||||
self,
|
||||
resources: Sequence[Any],
|
||||
vols: List[float],
|
||||
use_channels: Optional[List[int]] = None,
|
||||
flow_rates: Optional[List[Optional[float]]] = None,
|
||||
offsets: Any = None,
|
||||
liquid_height: Any = None,
|
||||
blow_out_air_volume: Any = None,
|
||||
spread: str = "wide",
|
||||
**backend_kwargs,
|
||||
):
|
||||
self.calls.append(
|
||||
(
|
||||
"dispense",
|
||||
{
|
||||
"resources": list(resources),
|
||||
"vols": list(vols),
|
||||
"use_channels": list(use_channels) if use_channels is not None else None,
|
||||
"flow_rates": list(flow_rates) if flow_rates is not None else None,
|
||||
"offsets": list(offsets) if offsets is not None else None,
|
||||
"liquid_height": list(liquid_height) if liquid_height is not None else None,
|
||||
"blow_out_air_volume": list(blow_out_air_volume) if blow_out_air_volume is not None else None,
|
||||
},
|
||||
)
|
||||
)
|
||||
|
||||
async def discard_tips(self, use_channels=None, *args, **kwargs):
|
||||
# 有的分支是 discard_tips(use_channels=[0]),有的分支是 discard_tips([0..7])(位置参数)
|
||||
self.calls.append(("discard_tips", {"use_channels": list(use_channels) if use_channels is not None else None}))
|
||||
|
||||
async def custom_delay(self, seconds=0, msg=None):
|
||||
self.calls.append(("custom_delay", {"seconds": seconds, "msg": msg}))
|
||||
|
||||
async def touch_tip(self, targets):
|
||||
# 原实现会访问 targets.get_size_x() 等;测试里只记录调用
|
||||
self.calls.append(("touch_tip", {"targets": targets}))
|
||||
|
||||
def run(coro):
|
||||
return asyncio.run(coro)
|
||||
|
||||
|
||||
def test_one_to_one_single_channel_basic_calls():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(64))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(3)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(3)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=[1, 2, 3],
|
||||
dis_vols=[4, 5, 6],
|
||||
mix_times=None, # 应该仍能执行(不 mix)
|
||||
)
|
||||
)
|
||||
|
||||
assert [c[0] for c in lh.calls].count("pick_up_tips") == 3
|
||||
assert [c[0] for c in lh.calls].count("aspirate") == 3
|
||||
assert [c[0] for c in lh.calls].count("dispense") == 3
|
||||
assert [c[0] for c in lh.calls].count("discard_tips") == 3
|
||||
|
||||
# 每次 aspirate/dispense 都是单孔列表
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
assert aspirates[0]["resources"] == [sources[0]]
|
||||
assert aspirates[0]["vols"] == [1.0]
|
||||
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert dispenses[2]["resources"] == [targets[2]]
|
||||
assert dispenses[2]["vols"] == [6.0]
|
||||
|
||||
|
||||
def test_one_to_one_single_channel_before_stage_mixes_prior_to_aspirate():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(16))
|
||||
|
||||
source = DummyContainer("S0")
|
||||
target = DummyContainer("T0")
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=[source],
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=[5],
|
||||
dis_vols=[5],
|
||||
mix_stage="before",
|
||||
mix_times=1,
|
||||
mix_vol=3,
|
||||
)
|
||||
)
|
||||
|
||||
aspirate_calls = [(idx, payload) for idx, (name, payload) in enumerate(lh.calls) if name == "aspirate"]
|
||||
assert len(aspirate_calls) >= 2
|
||||
mix_idx, mix_payload = aspirate_calls[0]
|
||||
assert mix_payload["resources"] == [target]
|
||||
assert mix_payload["vols"] == [3]
|
||||
transfer_idx, transfer_payload = aspirate_calls[1]
|
||||
assert transfer_payload["resources"] == [source]
|
||||
assert mix_idx < transfer_idx
|
||||
|
||||
|
||||
def test_one_to_one_eight_channel_groups_by_8():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(256))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(16)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(16)]
|
||||
asp_vols = list(range(1, 17))
|
||||
dis_vols = list(range(101, 117))
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=dis_vols,
|
||||
mix_times=0, # 触发逻辑但不 mix
|
||||
)
|
||||
)
|
||||
|
||||
# 16 个任务 -> 2 组,每组 8 通道一起做
|
||||
assert [c[0] for c in lh.calls].count("pick_up_tips") == 2
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert len(aspirates) == 2
|
||||
assert len(dispenses) == 2
|
||||
|
||||
assert aspirates[0]["resources"] == sources[0:8]
|
||||
assert aspirates[0]["vols"] == [float(v) for v in asp_vols[0:8]]
|
||||
assert dispenses[1]["resources"] == targets[8:16]
|
||||
assert dispenses[1]["vols"] == [float(v) for v in dis_vols[8:16]]
|
||||
|
||||
|
||||
def test_one_to_one_eight_channel_requires_multiple_of_8_targets():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(64))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(9)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(9)]
|
||||
|
||||
with pytest.raises(ValueError, match="multiple of 8"):
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=[1] * 9,
|
||||
dis_vols=[1] * 9,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
|
||||
def test_one_to_one_eight_channel_parameter_lists_are_chunked_per_8():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(512))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(16)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(16)]
|
||||
asp_vols = [i + 1 for i in range(16)]
|
||||
dis_vols = [200 + i for i in range(16)]
|
||||
asp_flow_rates = [0.1 * (i + 1) for i in range(16)]
|
||||
dis_flow_rates = [0.2 * (i + 1) for i in range(16)]
|
||||
offsets = [f"offset_{i}" for i in range(16)]
|
||||
liquid_heights = [i * 0.5 for i in range(16)]
|
||||
blow_out_air_volume = [i + 0.05 for i in range(16)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=dis_vols,
|
||||
asp_flow_rates=asp_flow_rates,
|
||||
dis_flow_rates=dis_flow_rates,
|
||||
offsets=offsets,
|
||||
liquid_height=liquid_heights,
|
||||
blow_out_air_volume=blow_out_air_volume,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert len(aspirates) == len(dispenses) == 2
|
||||
|
||||
for batch_idx in range(2):
|
||||
start = batch_idx * 8
|
||||
end = start + 8
|
||||
asp_call = aspirates[batch_idx]
|
||||
dis_call = dispenses[batch_idx]
|
||||
assert asp_call["resources"] == sources[start:end]
|
||||
assert asp_call["flow_rates"] == asp_flow_rates[start:end]
|
||||
assert asp_call["offsets"] == offsets[start:end]
|
||||
assert asp_call["liquid_height"] == liquid_heights[start:end]
|
||||
assert asp_call["blow_out_air_volume"] == blow_out_air_volume[start:end]
|
||||
assert dis_call["flow_rates"] == dis_flow_rates[start:end]
|
||||
assert dis_call["offsets"] == offsets[start:end]
|
||||
assert dis_call["liquid_height"] == liquid_heights[start:end]
|
||||
assert dis_call["blow_out_air_volume"] == blow_out_air_volume[start:end]
|
||||
|
||||
|
||||
def test_one_to_one_eight_channel_handles_32_tasks_four_batches():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(1024))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(32)]
|
||||
targets = [DummyContainer(f"T{i}") for i in range(32)]
|
||||
asp_vols = [i + 1 for i in range(32)]
|
||||
dis_vols = [300 + i for i in range(32)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=dis_vols,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
pick_calls = [name for name, _ in lh.calls if name == "pick_up_tips"]
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert len(pick_calls) == 4
|
||||
assert len(aspirates) == len(dispenses) == 4
|
||||
assert aspirates[0]["resources"] == sources[0:8]
|
||||
assert aspirates[-1]["resources"] == sources[24:32]
|
||||
assert dispenses[0]["resources"] == targets[0:8]
|
||||
assert dispenses[-1]["resources"] == targets[24:32]
|
||||
|
||||
|
||||
def test_one_to_many_single_channel_aspirates_total_when_asp_vol_too_small():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(64))
|
||||
|
||||
source = DummyContainer("SRC")
|
||||
targets = [DummyContainer(f"T{i}") for i in range(3)]
|
||||
dis_vols = [10, 20, 30] # sum=60
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=[source],
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=10, # 小于 sum(dis_vols) -> 应吸 60
|
||||
dis_vols=dis_vols,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
assert len(aspirates) == 1
|
||||
assert aspirates[0]["resources"] == [source]
|
||||
assert aspirates[0]["vols"] == [60.0]
|
||||
assert aspirates[0]["use_channels"] == [0]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert [d["vols"][0] for d in dispenses] == [10.0, 20.0, 30.0]
|
||||
|
||||
|
||||
def test_one_to_many_eight_channel_basic():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(128))
|
||||
|
||||
source = DummyContainer("SRC")
|
||||
targets = [DummyContainer(f"T{i}") for i in range(8)]
|
||||
dis_vols = [i + 1 for i in range(8)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=[source],
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=999, # one-to-many 8ch 会按 dis_vols 吸(每通道各自)
|
||||
dis_vols=dis_vols,
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
assert aspirates[0]["resources"] == [source] * 8
|
||||
assert aspirates[0]["vols"] == [float(v) for v in dis_vols]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert dispenses[0]["resources"] == targets
|
||||
assert dispenses[0]["vols"] == [float(v) for v in dis_vols]
|
||||
|
||||
|
||||
def test_many_to_one_single_channel_standard_dispense_equals_asp_by_default():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(128))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(3)]
|
||||
target = DummyContainer("T")
|
||||
asp_vols = [5, 6, 7]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=1, # many-to-one 允许标量;非比例模式下实际每次分液=对应 asp_vol
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert [d["vols"][0] for d in dispenses] == [float(v) for v in asp_vols]
|
||||
assert all(d["resources"] == [target] for d in dispenses)
|
||||
|
||||
|
||||
def test_many_to_one_single_channel_before_stage_mixes_target_once():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(128))
|
||||
|
||||
sources = [DummyContainer("S0"), DummyContainer("S1")]
|
||||
target = DummyContainer("T")
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=[5, 6],
|
||||
dis_vols=1,
|
||||
mix_stage="before",
|
||||
mix_times=2,
|
||||
mix_vol=4,
|
||||
)
|
||||
)
|
||||
|
||||
aspirate_calls = [(idx, payload) for idx, (name, payload) in enumerate(lh.calls) if name == "aspirate"]
|
||||
assert len(aspirate_calls) >= 1
|
||||
mix_idx, mix_payload = aspirate_calls[0]
|
||||
assert mix_payload["resources"] == [target]
|
||||
assert mix_payload["vols"] == [4]
|
||||
# 第一個 mix 之後會真正開始吸 source
|
||||
assert any(call["resources"] == [sources[0]] for _, call in aspirate_calls[1:])
|
||||
|
||||
|
||||
def test_many_to_one_single_channel_proportional_mixing_uses_dis_vols_per_source():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
lh.current_tip = iter(make_tip_iter(128))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(3)]
|
||||
target = DummyContainer("T")
|
||||
asp_vols = [5, 6, 7]
|
||||
dis_vols = [1, 2, 3]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=dis_vols, # 比例模式
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert [d["vols"][0] for d in dispenses] == [float(v) for v in dis_vols]
|
||||
|
||||
|
||||
def test_many_to_one_eight_channel_basic():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(256))
|
||||
|
||||
sources = [DummyContainer(f"S{i}") for i in range(8)]
|
||||
target = DummyContainer("T")
|
||||
asp_vols = [10 + i for i in range(8)]
|
||||
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=[target],
|
||||
tip_racks=[],
|
||||
use_channels=list(range(8)),
|
||||
asp_vols=asp_vols,
|
||||
dis_vols=999, # 非比例模式下每通道分液=对应 asp_vol
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert aspirates[0]["resources"] == sources
|
||||
assert aspirates[0]["vols"] == [float(v) for v in asp_vols]
|
||||
assert dispenses[0]["resources"] == [target] * 8
|
||||
assert dispenses[0]["vols"] == [float(v) for v in asp_vols]
|
||||
|
||||
|
||||
def test_transfer_liquid_mode_detection_unsupported_shape_raises():
|
||||
lh = FakeLiquidHandler(channel_num=8)
|
||||
lh.current_tip = iter(make_tip_iter(64))
|
||||
|
||||
sources = [DummyContainer("S0"), DummyContainer("S1")]
|
||||
targets = [DummyContainer("T0"), DummyContainer("T1"), DummyContainer("T2")]
|
||||
|
||||
with pytest.raises(ValueError, match="Unsupported transfer mode"):
|
||||
run(
|
||||
lh.transfer_liquid(
|
||||
sources=sources,
|
||||
targets=targets,
|
||||
tip_racks=[],
|
||||
use_channels=[0],
|
||||
asp_vols=[1, 1],
|
||||
dis_vols=[1, 1, 1],
|
||||
mix_times=0,
|
||||
)
|
||||
)
|
||||
|
||||
|
||||
def test_mix_single_target_produces_matching_cycles():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
target = DummyContainer("T_mix")
|
||||
|
||||
run(lh.mix(targets=[target], mix_time=2, mix_vol=5))
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
dispenses = [payload for name, payload in lh.calls if name == "dispense"]
|
||||
assert len(aspirates) == len(dispenses) == 2
|
||||
assert all(call["resources"] == [target] for call in aspirates)
|
||||
assert all(call["vols"] == [5] for call in aspirates)
|
||||
assert all(call["resources"] == [target] for call in dispenses)
|
||||
assert all(call["vols"] == [5] for call in dispenses)
|
||||
|
||||
|
||||
def test_mix_multiple_targets_supports_per_target_offsets():
|
||||
lh = FakeLiquidHandler(channel_num=1)
|
||||
targets = [DummyContainer("T0"), DummyContainer("T1")]
|
||||
offsets = ["left", "right"]
|
||||
heights = [0.1, 0.2]
|
||||
rates = [0.5, 1.0]
|
||||
|
||||
run(
|
||||
lh.mix(
|
||||
targets=targets,
|
||||
mix_time=1,
|
||||
mix_vol=3,
|
||||
offsets=offsets,
|
||||
height_to_bottom=heights,
|
||||
mix_rate=rates,
|
||||
)
|
||||
)
|
||||
|
||||
aspirates = [payload for name, payload in lh.calls if name == "aspirate"]
|
||||
assert len(aspirates) == 2
|
||||
assert aspirates[0]["resources"] == [targets[0]]
|
||||
assert aspirates[0]["offsets"] == [offsets[0]]
|
||||
assert aspirates[0]["liquid_height"] == [heights[0]]
|
||||
assert aspirates[0]["flow_rates"] == [rates[0]]
|
||||
assert aspirates[1]["resources"] == [targets[1]]
|
||||
assert aspirates[1]["offsets"] == [offsets[1]]
|
||||
assert aspirates[1]["liquid_height"] == [heights[1]]
|
||||
assert aspirates[1]["flow_rates"] == [rates[1]]
|
||||
|
||||
|
||||
@@ -1 +1 @@
|
||||
__version__ = "0.10.15"
|
||||
__version__ = "0.10.17"
|
||||
|
||||
@@ -7,7 +7,6 @@ import sys
|
||||
import threading
|
||||
import time
|
||||
from typing import Dict, Any, List
|
||||
|
||||
import networkx as nx
|
||||
import yaml
|
||||
|
||||
@@ -17,9 +16,9 @@ unilabos_dir = os.path.dirname(os.path.dirname(current_dir))
|
||||
if unilabos_dir not in sys.path:
|
||||
sys.path.append(unilabos_dir)
|
||||
|
||||
from unilabos.app.utils import cleanup_for_restart
|
||||
from unilabos.utils.banner_print import print_status, print_unilab_banner
|
||||
from unilabos.config.config import load_config, BasicConfig, HTTPConfig
|
||||
from unilabos.app.utils import cleanup_for_restart
|
||||
|
||||
# Global restart flags (used by ws_client and web/server)
|
||||
_restart_requested: bool = False
|
||||
@@ -161,6 +160,12 @@ def parse_args():
|
||||
default=False,
|
||||
help="Complete registry information",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--check_mode",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Run in check mode for CI: validates registry imports and ensures no file changes",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--no_update_feedback",
|
||||
action="store_true",
|
||||
@@ -211,7 +216,10 @@ def main():
|
||||
args_dict = vars(args)
|
||||
|
||||
# 环境检查 - 检查并自动安装必需的包 (可选)
|
||||
if not args_dict.get("skip_env_check", False):
|
||||
skip_env_check = args_dict.get("skip_env_check", False)
|
||||
check_mode = args_dict.get("check_mode", False)
|
||||
|
||||
if not skip_env_check:
|
||||
from unilabos.utils.environment_check import check_environment
|
||||
|
||||
if not check_environment(auto_install=True):
|
||||
@@ -222,7 +230,21 @@ def main():
|
||||
|
||||
# 加载配置文件,优先加载config,然后从env读取
|
||||
config_path = args_dict.get("config")
|
||||
if os.getcwd().endswith("unilabos_data"):
|
||||
|
||||
if check_mode:
|
||||
args_dict["working_dir"] = os.path.abspath(os.getcwd())
|
||||
# 当 skip_env_check 时,默认使用当前目录作为 working_dir
|
||||
if skip_env_check and not args_dict.get("working_dir") and not config_path:
|
||||
working_dir = os.path.abspath(os.getcwd())
|
||||
print_status(f"跳过环境检查模式:使用当前目录作为工作目录 {working_dir}", "info")
|
||||
# 检查当前目录是否有 local_config.py
|
||||
local_config_in_cwd = os.path.join(working_dir, "local_config.py")
|
||||
if os.path.exists(local_config_in_cwd):
|
||||
config_path = local_config_in_cwd
|
||||
print_status(f"发现本地配置文件: {config_path}", "info")
|
||||
else:
|
||||
print_status(f"未指定config路径,可通过 --config 传入 local_config.py 文件路径", "info")
|
||||
elif os.getcwd().endswith("unilabos_data"):
|
||||
working_dir = os.path.abspath(os.getcwd())
|
||||
else:
|
||||
working_dir = os.path.abspath(os.path.join(os.getcwd(), "unilabos_data"))
|
||||
@@ -241,7 +263,7 @@ def main():
|
||||
working_dir = os.path.dirname(config_path)
|
||||
elif os.path.exists(working_dir) and os.path.exists(os.path.join(working_dir, "local_config.py")):
|
||||
config_path = os.path.join(working_dir, "local_config.py")
|
||||
elif not config_path and (
|
||||
elif not skip_env_check and not config_path and (
|
||||
not os.path.exists(working_dir) or not os.path.exists(os.path.join(working_dir, "local_config.py"))
|
||||
):
|
||||
print_status(f"未指定config路径,可通过 --config 传入 local_config.py 文件路径", "info")
|
||||
@@ -255,9 +277,11 @@ def main():
|
||||
print_status(f"已创建 local_config.py 路径: {config_path}", "info")
|
||||
else:
|
||||
os._exit(1)
|
||||
# 加载配置文件
|
||||
|
||||
# 加载配置文件 (check_mode 跳过)
|
||||
print_status(f"当前工作目录为 {working_dir}", "info")
|
||||
load_config_from_file(config_path)
|
||||
if not check_mode:
|
||||
load_config_from_file(config_path)
|
||||
|
||||
# 根据配置重新设置日志级别
|
||||
from unilabos.utils.log import configure_logger, logger
|
||||
@@ -313,6 +337,7 @@ def main():
|
||||
machine_name = "".join([c if c.isalnum() or c == "_" else "_" for c in machine_name])
|
||||
BasicConfig.machine_name = machine_name
|
||||
BasicConfig.vis_2d_enable = args_dict["2d_vis"]
|
||||
BasicConfig.check_mode = check_mode
|
||||
|
||||
from unilabos.resources.graphio import (
|
||||
read_node_link_json,
|
||||
@@ -331,10 +356,14 @@ def main():
|
||||
# 显示启动横幅
|
||||
print_unilab_banner(args_dict)
|
||||
|
||||
# 注册表
|
||||
lab_registry = build_registry(
|
||||
args_dict["registry_path"], args_dict.get("complete_registry", False), BasicConfig.upload_registry
|
||||
)
|
||||
# 注册表 - check_mode 时强制启用 complete_registry
|
||||
complete_registry = args_dict.get("complete_registry", False) or check_mode
|
||||
lab_registry = build_registry(args_dict["registry_path"], complete_registry, BasicConfig.upload_registry)
|
||||
|
||||
# Check mode: complete_registry 完成后直接退出,git diff 检测由 CI workflow 执行
|
||||
if check_mode:
|
||||
print_status("Check mode: complete_registry 完成,退出", "info")
|
||||
os._exit(0)
|
||||
|
||||
if BasicConfig.upload_registry:
|
||||
# 设备注册到服务端 - 需要 ak 和 sk
|
||||
|
||||
@@ -4,8 +4,40 @@ UniLabOS 应用工具函数
|
||||
提供清理、重启等工具函数
|
||||
"""
|
||||
|
||||
import gc
|
||||
import glob
|
||||
import os
|
||||
import shutil
|
||||
import sys
|
||||
|
||||
|
||||
def patch_rclpy_dll_windows():
|
||||
"""在 Windows + conda 环境下为 rclpy 打 DLL 加载补丁"""
|
||||
if sys.platform != "win32" or not os.environ.get("CONDA_PREFIX"):
|
||||
return
|
||||
try:
|
||||
import rclpy
|
||||
|
||||
return
|
||||
except ImportError as e:
|
||||
if not str(e).startswith("DLL load failed"):
|
||||
return
|
||||
cp = os.environ["CONDA_PREFIX"]
|
||||
impl = os.path.join(cp, "Lib", "site-packages", "rclpy", "impl", "implementation_singleton.py")
|
||||
pyd = glob.glob(os.path.join(cp, "Lib", "site-packages", "rclpy", "_rclpy_pybind11*.pyd"))
|
||||
if not os.path.exists(impl) or not pyd:
|
||||
return
|
||||
with open(impl, "r", encoding="utf-8") as f:
|
||||
content = f.read()
|
||||
lib_bin = os.path.join(cp, "Library", "bin").replace("\\", "/")
|
||||
patch = f'# UniLabOS DLL Patch\nimport os,ctypes\nos.add_dll_directory("{lib_bin}") if hasattr(os,"add_dll_directory") else None\ntry: ctypes.CDLL("{pyd[0].replace(chr(92),"/")}")\nexcept: pass\n# End Patch\n'
|
||||
shutil.copy2(impl, impl + ".bak")
|
||||
with open(impl, "w", encoding="utf-8") as f:
|
||||
f.write(patch + content)
|
||||
|
||||
|
||||
patch_rclpy_dll_windows()
|
||||
|
||||
import gc
|
||||
import threading
|
||||
import time
|
||||
|
||||
|
||||
0
unilabos/devices/Qone_nmr/__init__.py
Normal file
0
unilabos/devices/Qone_nmr/__init__.py
Normal file
@@ -207,7 +207,14 @@ class LiquidHandlerMiddleware(LiquidHandler):
|
||||
|
||||
res_samples = []
|
||||
res_volumes = []
|
||||
for resource, volume, channel in zip(resources, vols, use_channels):
|
||||
# 处理 use_channels 为 None 的情况(通常用于单通道操作)
|
||||
if use_channels is None:
|
||||
# 对于单通道操作,推断通道为 [0]
|
||||
channels_to_use = [0] * len(resources)
|
||||
else:
|
||||
channels_to_use = use_channels
|
||||
|
||||
for resource, volume, channel in zip(resources, vols, channels_to_use):
|
||||
res_samples.append({"name": resource.name, "sample_uuid": resource.unilabos_extra.get("sample_uuid", None)})
|
||||
res_volumes.append(volume)
|
||||
self.pending_liquids_dict[channel] = {
|
||||
@@ -920,6 +927,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
@@ -983,6 +991,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
@@ -1165,6 +1174,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
|
||||
await self.aspirate(
|
||||
@@ -1199,6 +1209,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
@@ -1235,6 +1246,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
|
||||
await self.aspirate(
|
||||
@@ -1271,6 +1283,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
@@ -1327,6 +1340,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets[idx:idx + 1] if offsets and len(offsets) > idx else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
|
||||
# 从源容器吸液(总体积)
|
||||
@@ -1366,6 +1380,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets[idx:idx+1] if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
if touch_tip:
|
||||
await self.touch_tip([target])
|
||||
@@ -1401,6 +1416,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets[i:i + 8] if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
|
||||
# 从源容器吸液(8个通道都从同一个源,但每个通道的吸液体积不同)
|
||||
@@ -1446,6 +1462,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
|
||||
if touch_tip:
|
||||
@@ -1497,10 +1514,19 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
f"(matching `asp_vols`). Got length {len(dis_vols)}."
|
||||
)
|
||||
|
||||
need_mix_after = mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0
|
||||
defer_final_discard = need_mix_after or touch_tip
|
||||
|
||||
if len(use_channels) == 1:
|
||||
# 单通道模式:多次吸液,一次分液
|
||||
# 先混合前(如果需要)
|
||||
|
||||
# 如果需要 before mix,先 pick up tip 并执行 mix
|
||||
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
|
||||
await self.mix(
|
||||
targets=[target],
|
||||
mix_time=mix_times,
|
||||
@@ -1508,8 +1534,11 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets[0:1] if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
|
||||
|
||||
await self.discard_tips(use_channels=use_channels)
|
||||
|
||||
# 从每个源容器吸液并分液到目标容器
|
||||
for idx, source in enumerate(sources):
|
||||
tip = []
|
||||
@@ -1527,10 +1556,10 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
blow_out_air_volume=[blow_out_air_volume[idx]] if blow_out_air_volume and len(blow_out_air_volume) > idx else None,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
|
||||
if delays is not None:
|
||||
await self.custom_delay(seconds=delays[0])
|
||||
|
||||
|
||||
# 分液到目标容器
|
||||
if use_proportional_mixing:
|
||||
# 按不同比例混合:使用对应的 dis_vols
|
||||
@@ -1546,7 +1575,7 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
dis_offset = offsets[0] if offsets and len(offsets) > 0 else None
|
||||
dis_liquid_height = liquid_height[0] if liquid_height and len(liquid_height) > 0 else None
|
||||
dis_blow_out = blow_out_air_volume[0] if blow_out_air_volume and len(blow_out_air_volume) > 0 else None
|
||||
|
||||
|
||||
await self.dispense(
|
||||
resources=[target],
|
||||
vols=[dis_vol],
|
||||
@@ -1557,14 +1586,15 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
liquid_height=[dis_liquid_height] if dis_liquid_height is not None else None,
|
||||
spread=spread,
|
||||
)
|
||||
|
||||
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
|
||||
await self.discard_tips(use_channels=use_channels)
|
||||
|
||||
|
||||
if not (defer_final_discard and idx == len(sources) - 1):
|
||||
await self.discard_tips(use_channels=use_channels)
|
||||
|
||||
# 最后在目标容器中混合(如果需要)
|
||||
if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
|
||||
if need_mix_after:
|
||||
await self.mix(
|
||||
targets=[target],
|
||||
mix_time=mix_times,
|
||||
@@ -1572,18 +1602,27 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets[0:1] if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
|
||||
if touch_tip:
|
||||
await self.touch_tip([target])
|
||||
|
||||
if defer_final_discard:
|
||||
await self.discard_tips(use_channels=use_channels)
|
||||
|
||||
elif len(use_channels) == 8:
|
||||
# 8通道模式:需要确保源数量是8的倍数
|
||||
if len(sources) % 8 != 0:
|
||||
raise ValueError(f"For 8-channel mode, number of sources {len(sources)} must be a multiple of 8.")
|
||||
|
||||
# 每次处理8个源
|
||||
|
||||
# 如果需要 before mix,先 pick up tips 并执行 mix
|
||||
if mix_stage in ["before", "both"] and mix_times is not None and mix_times > 0:
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
tip.extend(next(self.current_tip))
|
||||
await self.pick_up_tips(tip)
|
||||
|
||||
await self.mix(
|
||||
targets=[target],
|
||||
mix_time=mix_times,
|
||||
@@ -1591,8 +1630,11 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets[0:1] if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
|
||||
await self.discard_tips([0,1,2,3,4,5,6,7])
|
||||
|
||||
for i in range(0, len(sources), 8):
|
||||
tip = []
|
||||
for _ in range(len(use_channels)):
|
||||
@@ -1650,11 +1692,12 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
|
||||
if delays is not None and len(delays) > 1:
|
||||
await self.custom_delay(seconds=delays[1])
|
||||
|
||||
await self.discard_tips([0,1,2,3,4,5,6,7])
|
||||
|
||||
|
||||
if not (defer_final_discard and i + 8 >= len(sources)):
|
||||
await self.discard_tips([0,1,2,3,4,5,6,7])
|
||||
|
||||
# 最后在目标容器中混合(如果需要)
|
||||
if mix_stage in ["after", "both"] and mix_times is not None and mix_times > 0:
|
||||
if need_mix_after:
|
||||
await self.mix(
|
||||
targets=[target],
|
||||
mix_time=mix_times,
|
||||
@@ -1662,11 +1705,15 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
offsets=offsets[0:1] if offsets else None,
|
||||
height_to_bottom=mix_liquid_height if mix_liquid_height else None,
|
||||
mix_rate=mix_rate if mix_rate else None,
|
||||
use_channels=use_channels,
|
||||
)
|
||||
|
||||
if touch_tip:
|
||||
await self.touch_tip([target])
|
||||
|
||||
if defer_final_discard:
|
||||
await self.discard_tips([0,1,2,3,4,5,6,7])
|
||||
|
||||
# except Exception as e:
|
||||
# traceback.print_exc()
|
||||
# raise RuntimeError(f"Liquid addition failed: {e}") from e
|
||||
@@ -1686,7 +1733,12 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
print(f"Waiting time: {msg}")
|
||||
print(f"Current time: {time.strftime('%H:%M:%S')}")
|
||||
print(f"Time to finish: {time.strftime('%H:%M:%S', time.localtime(time.time() + seconds))}")
|
||||
await self._ros_node.sleep(seconds)
|
||||
# Use ROS node sleep if available, otherwise use asyncio.sleep
|
||||
if hasattr(self, '_ros_node') and self._ros_node is not None:
|
||||
await self._ros_node.sleep(seconds)
|
||||
else:
|
||||
import asyncio
|
||||
await asyncio.sleep(seconds)
|
||||
if msg:
|
||||
print(f"Done: {msg}")
|
||||
print(f"Current time: {time.strftime('%H:%M:%S')}")
|
||||
@@ -1725,27 +1777,59 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
|
||||
height_to_bottom: Optional[float] = None,
|
||||
offsets: Optional[Coordinate] = None,
|
||||
mix_rate: Optional[float] = None,
|
||||
use_channels: Optional[List[int]] = None,
|
||||
none_keys: List[str] = [],
|
||||
):
|
||||
if mix_time is None: # No mixing required
|
||||
if mix_time is None or mix_time <= 0: # No mixing required
|
||||
return
|
||||
"""Mix the liquid in the target wells."""
|
||||
if mix_vol is None:
|
||||
raise ValueError("`mix_vol` must be provided when `mix_time` is set.")
|
||||
|
||||
targets_list: List[Container] = list(targets)
|
||||
if len(targets_list) == 0:
|
||||
return
|
||||
|
||||
def _expand(value, count: int):
|
||||
if value is None:
|
||||
return [None] * count
|
||||
if isinstance(value, (list, tuple)):
|
||||
if len(value) != count:
|
||||
raise ValueError("Length of per-target parameters must match targets.")
|
||||
return list(value)
|
||||
return [value] * count
|
||||
|
||||
offsets_list = _expand(offsets, len(targets_list))
|
||||
heights_list = _expand(height_to_bottom, len(targets_list))
|
||||
rates_list = _expand(mix_rate, len(targets_list))
|
||||
|
||||
for _ in range(mix_time):
|
||||
await self.aspirate(
|
||||
resources=[targets],
|
||||
vols=[mix_vol],
|
||||
flow_rates=[mix_rate] if mix_rate else None,
|
||||
offsets=[offsets] if offsets else None,
|
||||
liquid_height=[height_to_bottom] if height_to_bottom else None,
|
||||
)
|
||||
await self.custom_delay(seconds=1)
|
||||
await self.dispense(
|
||||
resources=[targets],
|
||||
vols=[mix_vol],
|
||||
flow_rates=[mix_rate] if mix_rate else None,
|
||||
offsets=[offsets] if offsets else None,
|
||||
liquid_height=[height_to_bottom] if height_to_bottom else None,
|
||||
)
|
||||
for idx, target in enumerate(targets_list):
|
||||
offset_arg = (
|
||||
[offsets_list[idx]] if offsets_list[idx] is not None else None
|
||||
)
|
||||
height_arg = (
|
||||
[heights_list[idx]] if heights_list[idx] is not None else None
|
||||
)
|
||||
rate_arg = [rates_list[idx]] if rates_list[idx] is not None else None
|
||||
|
||||
await self.aspirate(
|
||||
resources=[target],
|
||||
vols=[mix_vol],
|
||||
use_channels=use_channels,
|
||||
flow_rates=rate_arg,
|
||||
offsets=offset_arg,
|
||||
liquid_height=height_arg,
|
||||
)
|
||||
await self.custom_delay(seconds=1)
|
||||
await self.dispense(
|
||||
resources=[target],
|
||||
vols=[mix_vol],
|
||||
use_channels=use_channels,
|
||||
flow_rates=rate_arg,
|
||||
offsets=offset_arg,
|
||||
liquid_height=height_arg,
|
||||
)
|
||||
|
||||
def iter_tips(self, tip_racks: Sequence[TipRack]) -> Iterator[Resource]:
|
||||
"""Yield tips from a list of TipRacks one-by-one until depleted."""
|
||||
|
||||
@@ -30,11 +30,11 @@ from pylabrobot.liquid_handling.standard import (
|
||||
ResourceMove,
|
||||
ResourceDrop,
|
||||
)
|
||||
from pylabrobot.resources import ResourceHolder, ResourceStack, Tip, Deck, Plate, Well, TipRack, Resource, Container, Coordinate, TipSpot, Trash, PlateAdapter, TubeRack
|
||||
from pylabrobot.resources import ResourceHolder, ResourceStack, Tip, Deck, Plate, Well, TipRack, Resource, Container, Coordinate, TipSpot, Trash, PlateAdapter, TubeRack, create_homogeneous_resources, create_ordered_items_2d
|
||||
|
||||
from unilabos.devices.liquid_handling.liquid_handler_abstract import LiquidHandlerAbstract, SimpleReturn
|
||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
|
||||
|
||||
from unilabos.resources.itemized_carrier import ItemizedCarrier
|
||||
from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode, ROS2DeviceNode
|
||||
|
||||
class PRCXIError(RuntimeError):
|
||||
"""Lilith 返回 Success=false 时抛出的业务异常"""
|
||||
@@ -71,7 +71,10 @@ class PRCXI9300Deck(Deck):
|
||||
def __init__(self, name: str, size_x: float, size_y: float, size_z: float, **kwargs):
|
||||
super().__init__(name, size_x, size_y, size_z)
|
||||
self.slots = [None] * 16 # PRCXI 9300/9320 最大有 16 个槽位
|
||||
self.slot_locations = [Coordinate(0, 0, 0)] * 16
|
||||
self.slot_locations = []
|
||||
|
||||
for i in range(0, 16):
|
||||
self.slot_locations.append(Coordinate((i%4)*137.5+5, (3-int(i/4))*96+13, 0))
|
||||
|
||||
def assign_child_at_slot(self, resource: Resource, slot: int, reassign: bool = False) -> None:
|
||||
if self.slots[slot - 1] is not None and not reassign:
|
||||
@@ -136,13 +139,31 @@ class PRCXI9300Plate(Plate):
|
||||
# 使用 ordering 参数,只包含位置信息(键)
|
||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
||||
else:
|
||||
# ordering 的值已经是对象,可以直接使用
|
||||
items = ordering
|
||||
ordering_param = None
|
||||
# ordering 的值是对象(可能是 Well 对象),检查是否有有效的 location
|
||||
# 如果是反序列化过程,Well 对象可能没有正确的 location,需要让 Plate 重新创建
|
||||
sample_value = next(iter(ordering.values()), None)
|
||||
if sample_value is not None and hasattr(sample_value, 'location'):
|
||||
# 如果是 Well 对象但 location 为 None,说明是反序列化过程
|
||||
# 让 Plate 自己创建 Well 对象
|
||||
if sample_value.location is None:
|
||||
items = None
|
||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
||||
else:
|
||||
# Well 对象有有效的 location,可以直接使用
|
||||
items = ordering
|
||||
ordering_param = None
|
||||
elif sample_value is None:
|
||||
# ordering 的值都是 None,让 Plate 自己创建 Well 对象
|
||||
items = None
|
||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
||||
else:
|
||||
# 其他情况,直接使用
|
||||
items = ordering
|
||||
ordering_param = None
|
||||
else:
|
||||
items = None
|
||||
ordering_param = None
|
||||
|
||||
ordering_param = collections.OrderedDict() # 提供空的 ordering
|
||||
|
||||
# 根据情况传递不同的参数
|
||||
if items is not None:
|
||||
super().__init__(name, size_x, size_y, size_z,
|
||||
@@ -219,9 +240,16 @@ class PRCXI9300TipRack(TipRack):
|
||||
# 使用 ordering 参数,只包含位置信息(键)
|
||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
||||
else:
|
||||
# ordering 的值已经是对象,可以直接使用
|
||||
items = ordering
|
||||
ordering_param = None
|
||||
# ordering 的值已经是对象,需要过滤掉 None 值
|
||||
# 只保留有效的对象,用于 ordered_items 参数
|
||||
valid_items = {k: v for k, v in ordering.items() if v is not None}
|
||||
if valid_items:
|
||||
items = valid_items
|
||||
ordering_param = None
|
||||
else:
|
||||
# 如果没有有效对象,使用 ordering 参数
|
||||
items = None
|
||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
||||
else:
|
||||
items = None
|
||||
ordering_param = None
|
||||
@@ -284,7 +312,7 @@ class PRCXI9300Trash(Trash):
|
||||
"""
|
||||
|
||||
def __init__(self, name: str, size_x: float, size_y: float, size_z: float,
|
||||
category: str = "trash",
|
||||
category: str = "plate",
|
||||
material_info: Optional[Dict[str, Any]] = None,
|
||||
**kwargs):
|
||||
|
||||
@@ -336,8 +364,8 @@ class PRCXI9300TubeRack(TubeRack):
|
||||
def __init__(self, name: str, size_x: float, size_y: float, size_z: float,
|
||||
category: str = "tube_rack",
|
||||
items: Optional[Dict[str, Any]] = None,
|
||||
ordered_items: Optional[OrderedDict] = None,
|
||||
ordering: Optional[OrderedDict] = None,
|
||||
ordered_items: collections.OrderedDict = None,
|
||||
ordering: Optional[collections.OrderedDict] = None,
|
||||
model: Optional[str] = None,
|
||||
material_info: Optional[Dict[str, Any]] = None,
|
||||
**kwargs):
|
||||
@@ -348,18 +376,24 @@ class PRCXI9300TubeRack(TubeRack):
|
||||
ordering_param = None
|
||||
elif ordering is not None:
|
||||
# 检查 ordering 中的值是否是字符串(从 JSON 反序列化时的情况)
|
||||
# 如果是字符串,说明这是位置名称,需要让 TubeRack 自己创建 Tube 对象
|
||||
# 我们只传递位置信息(键),不传递值,使用 ordering 参数
|
||||
if ordering and isinstance(next(iter(ordering.values()), None), str):
|
||||
# ordering 的值是字符串,只使用键(位置信息)创建新的 OrderedDict
|
||||
# 传递 ordering 参数而不是 ordered_items,让 TubeRack 自己创建 Tube 对象
|
||||
# ordering 的值是字符串,这种情况下我们让 TubeRack 使用默认行为
|
||||
# 不在初始化时创建 items,而是在 deserialize 后处理
|
||||
items_to_pass = None
|
||||
# 使用 ordering 参数,只包含位置信息(键)
|
||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
||||
ordering_param = collections.OrderedDict((k, None) for k in ordering.keys()) # 提供空的 ordering 来满足要求
|
||||
# 保存 ordering 信息以便后续处理
|
||||
self._temp_ordering = ordering
|
||||
else:
|
||||
# ordering 的值已经是对象,可以直接使用
|
||||
items_to_pass = ordering
|
||||
ordering_param = None
|
||||
# ordering 的值已经是对象,需要过滤掉 None 值
|
||||
# 只保留有效的对象,用于 ordered_items 参数
|
||||
valid_items = {k: v for k, v in ordering.items() if v is not None}
|
||||
if valid_items:
|
||||
items_to_pass = valid_items
|
||||
ordering_param = None
|
||||
else:
|
||||
# 如果没有有效对象,创建空的 ordered_items
|
||||
items_to_pass = {}
|
||||
ordering_param = None
|
||||
elif items is not None:
|
||||
# 兼容旧的 items 参数
|
||||
items_to_pass = items
|
||||
@@ -370,25 +404,50 @@ class PRCXI9300TubeRack(TubeRack):
|
||||
|
||||
# 根据情况传递不同的参数
|
||||
if items_to_pass is not None:
|
||||
super().__init__(name, size_x, size_y, size_z,
|
||||
ordered_items=items_to_pass,
|
||||
model=model,
|
||||
super().__init__(name, size_x, size_y, size_z,
|
||||
ordered_items=items_to_pass,
|
||||
model=model,
|
||||
**kwargs)
|
||||
elif ordering_param is not None:
|
||||
# 传递 ordering 参数,让 TubeRack 自己创建 Tube 对象
|
||||
super().__init__(name, size_x, size_y, size_z,
|
||||
ordering=ordering_param,
|
||||
model=model,
|
||||
**kwargs)
|
||||
# 直接调用 ItemizedResource 的构造函数来处理 ordering
|
||||
from pylabrobot.resources import ItemizedResource
|
||||
ItemizedResource.__init__(self, name, size_x, size_y, size_z,
|
||||
ordering=ordering_param,
|
||||
category=category,
|
||||
model=model,
|
||||
**kwargs)
|
||||
else:
|
||||
super().__init__(name, size_x, size_y, size_z,
|
||||
model=model,
|
||||
super().__init__(name, size_x, size_y, size_z,
|
||||
model=model,
|
||||
**kwargs)
|
||||
|
||||
|
||||
self._unilabos_state = {}
|
||||
if material_info:
|
||||
self._unilabos_state["Material"] = material_info
|
||||
|
||||
# 如果有临时 ordering 信息,在初始化完成后处理
|
||||
if hasattr(self, '_temp_ordering') and self._temp_ordering:
|
||||
self._process_temp_ordering()
|
||||
|
||||
def _process_temp_ordering(self):
|
||||
"""处理临时的 ordering 信息,创建相应的 Tube 对象"""
|
||||
from pylabrobot.resources import Tube, Coordinate
|
||||
|
||||
for location, item_type in self._temp_ordering.items():
|
||||
if item_type == 'Tube' or item_type == 'tube':
|
||||
# 为每个位置创建 Tube 对象
|
||||
tube = Tube(name=f"{self.name}_{location}", size_x=10, size_y=10, size_z=50, max_volume=2000.0)
|
||||
# 使用 assign_child_resource 添加到 rack 中
|
||||
self.assign_child_resource(tube, location=Coordinate(0, 0, 0))
|
||||
|
||||
# 清理临时数据
|
||||
del self._temp_ordering
|
||||
|
||||
def load_state(self, state: Dict[str, Any]) -> None:
|
||||
"""从给定的状态加载工作台信息。"""
|
||||
# super().load_state(state)
|
||||
self._unilabos_state = state
|
||||
|
||||
def serialize_state(self) -> Dict[str, Dict[str, Any]]:
|
||||
try:
|
||||
data = super().serialize_state()
|
||||
@@ -415,6 +474,97 @@ class PRCXI9300TubeRack(TubeRack):
|
||||
|
||||
data.update(safe_state)
|
||||
return data
|
||||
class PRCXI9300PlateAdapterSite(ItemizedCarrier):
|
||||
def __init__(self, name: str, size_x: float, size_y: float, size_z: float,
|
||||
material_info: Optional[Dict[str, Any]] = None, **kwargs):
|
||||
# 处理 sites 参数的不同格式
|
||||
|
||||
sites = create_homogeneous_resources(
|
||||
klass=ResourceHolder,
|
||||
locations=[Coordinate(0, 0, 0)],
|
||||
resource_size_x=size_x,
|
||||
resource_size_y=size_y,
|
||||
resource_size_z=size_z,
|
||||
name_prefix=name,
|
||||
)[0]
|
||||
|
||||
# 确保不传递重复的参数
|
||||
kwargs.pop('layout', None)
|
||||
sites_in = kwargs.pop('sites', None)
|
||||
|
||||
# 创建默认的sites字典
|
||||
sites_dict = {name: sites}
|
||||
# 优先从 sites_in 读取 'content_type',否则使用默认值
|
||||
|
||||
content_type = [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
# 如果提供了sites参数,则用sites_in中的值替换sites_dict中对应的元素
|
||||
if sites_in is not None and isinstance(sites_in, dict):
|
||||
for site_key, site_value in sites_in.items():
|
||||
if site_key in sites_dict:
|
||||
sites_dict[site_key] = site_value
|
||||
|
||||
super().__init__(name, size_x, size_y, size_z,
|
||||
sites=sites_dict,
|
||||
num_items_x=kwargs.pop('num_items_x', 1),
|
||||
num_items_y=kwargs.pop('num_items_y', 1),
|
||||
num_items_z=kwargs.pop('num_items_z', 1),
|
||||
content_type=content_type,
|
||||
**kwargs)
|
||||
self._unilabos_state = {}
|
||||
if material_info:
|
||||
self._unilabos_state["Material"] = material_info
|
||||
|
||||
|
||||
def assign_child_resource(self, resource, location=Coordinate(0, 0, 0), reassign=True, spot=None):
|
||||
"""重写 assign_child_resource 方法,对于适配器位置,不使用索引分配"""
|
||||
# 直接调用 Resource 的 assign_child_resource,避免 ItemizedCarrier 的索引逻辑
|
||||
from pylabrobot.resources.resource import Resource
|
||||
Resource.assign_child_resource(self, resource, location=location, reassign=reassign)
|
||||
|
||||
def unassign_child_resource(self, resource):
|
||||
"""重写 unassign_child_resource 方法,对于适配器位置,不使用 sites 列表"""
|
||||
# 直接调用 Resource 的 unassign_child_resource,避免 ItemizedCarrier 的 sites 逻辑
|
||||
from pylabrobot.resources.resource import Resource
|
||||
Resource.unassign_child_resource(self, resource)
|
||||
|
||||
def serialize_state(self) -> Dict[str, Dict[str, Any]]:
|
||||
try:
|
||||
data = super().serialize_state()
|
||||
except AttributeError:
|
||||
data = {}
|
||||
|
||||
# 包含 sites 配置信息,但避免序列化 ResourceHolder 对象
|
||||
if hasattr(self, 'sites') and self.sites:
|
||||
# 只保存 sites 的基本信息,不保存 ResourceHolder 对象本身
|
||||
sites_info = []
|
||||
for site in self.sites:
|
||||
if hasattr(site, '__class__') and 'pylabrobot' in str(site.__class__.__module__):
|
||||
# 对于 pylabrobot 对象,只保存基本信息
|
||||
sites_info.append({
|
||||
"__pylabrobot_object__": True,
|
||||
"class": site.__class__.__name__,
|
||||
"module": site.__class__.__module__,
|
||||
"name": getattr(site, 'name', str(site))
|
||||
})
|
||||
else:
|
||||
sites_info.append(site)
|
||||
data['sites'] = sites_info
|
||||
|
||||
return data
|
||||
|
||||
def load_state(self, state: Dict[str, Any]) -> None:
|
||||
"""加载状态,包括 sites 配置信息"""
|
||||
super().load_state(state)
|
||||
|
||||
# 从状态中恢复 sites 配置信息
|
||||
if 'sites' in state:
|
||||
self.sites = [state['sites']]
|
||||
|
||||
class PRCXI9300PlateAdapter(PlateAdapter):
|
||||
"""
|
||||
@@ -510,16 +660,51 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
|
||||
step_mode=False,
|
||||
matrix_id="",
|
||||
is_9320=False,
|
||||
start_rail=2,
|
||||
rail_nums=4,
|
||||
rail_interval=0,
|
||||
x_increase = -0.003636,
|
||||
y_increase = -0.003636,
|
||||
x_offset = -0.8,
|
||||
y_offset = -37.98,
|
||||
deck_z = 300,
|
||||
deck_y = 400,
|
||||
rail_width=27.5,
|
||||
xy_coupling = -0.0045,
|
||||
):
|
||||
tablets_info = []
|
||||
count = 0
|
||||
|
||||
self.deck_x = (start_rail + rail_nums*5 + (rail_nums-1)*rail_interval) * rail_width
|
||||
self.deck_y = deck_y
|
||||
self.deck_z = deck_z
|
||||
self.x_increase = x_increase
|
||||
self.y_increase = y_increase
|
||||
self.x_offset = x_offset
|
||||
self.y_offset = y_offset
|
||||
self.xy_coupling = xy_coupling
|
||||
|
||||
tablets_info = {}
|
||||
plate_positions = []
|
||||
for child in deck.children:
|
||||
number = int(child.name.replace("T", ""))
|
||||
|
||||
if child.children:
|
||||
if "Material" in child.children[0]._unilabos_state:
|
||||
number = int(child.name.replace("T", ""))
|
||||
tablets_info.append(
|
||||
WorkTablets(Number=number, Code=f"T{number}", Material=child.children[0]._unilabos_state["Material"])
|
||||
)
|
||||
tablets_info[number] = child.children[0]._unilabos_state["Material"].get("uuid", "730067cf07ae43849ddf4034299030e9")
|
||||
else:
|
||||
tablets_info[number] = "730067cf07ae43849ddf4034299030e9"
|
||||
else:
|
||||
tablets_info[number] = "730067cf07ae43849ddf4034299030e9"
|
||||
pos = self.plr_pos_to_prcxi(child)
|
||||
plate_positions.append(
|
||||
{
|
||||
"Number": number,
|
||||
"XPos": pos.x,
|
||||
"YPos": pos.y,
|
||||
"ZPos": pos.z
|
||||
}
|
||||
)
|
||||
|
||||
|
||||
if is_9320:
|
||||
print("当前设备是9320")
|
||||
# 始终初始化 step_mode 属性
|
||||
@@ -529,10 +714,38 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
|
||||
self.step_mode = step_mode
|
||||
else:
|
||||
print("9300设备不支持 单点动作模式")
|
||||
|
||||
self._unilabos_backend = PRCXI9300Backend(
|
||||
tablets_info, host, port, timeout, channel_num, axis, setup, debug, matrix_id, is_9320
|
||||
tablets_info, plate_positions, host, port, timeout, channel_num, axis, setup, debug, matrix_id, is_9320,
|
||||
x_increase, y_increase, x_offset, y_offset,
|
||||
deck_z, deck_x=self.deck_x, deck_y=self.deck_y, xy_coupling=xy_coupling
|
||||
)
|
||||
|
||||
super().__init__(backend=self._unilabos_backend, deck=deck, simulator=simulator, channel_num=channel_num)
|
||||
|
||||
def plr_pos_to_prcxi(self, resource: Resource):
|
||||
resource_pos = resource.get_absolute_location(x="c",y="c",z="t")
|
||||
x = resource_pos.x
|
||||
y = resource_pos.y
|
||||
z = resource_pos.z
|
||||
# 如果z等于0,则递归resource.parent的高度并向z加,使用get_size_z方法
|
||||
|
||||
parent = resource.parent
|
||||
res_z = resource.location.z
|
||||
while not isinstance(parent, LiquidHandlerAbstract) and (res_z == 0) and parent is not None:
|
||||
z += parent.get_size_z()
|
||||
res_z = parent.location.z
|
||||
parent = getattr(parent, "parent", None)
|
||||
|
||||
prcxi_x = (self.deck_x - x)*(1+self.x_increase) + self.x_offset + self.xy_coupling * (self.deck_y - y)
|
||||
prcxi_y = (self.deck_y - y)*(1+self.y_increase) + self.y_offset
|
||||
prcxi_z = self.deck_z - z
|
||||
|
||||
prcxi_x = min(max(0, prcxi_x),self.deck_x)
|
||||
prcxi_y = min(max(0, prcxi_y),self.deck_y)
|
||||
prcxi_z = min(max(0, prcxi_z),self.deck_z)
|
||||
|
||||
return Coordinate(prcxi_x, prcxi_y, prcxi_z)
|
||||
|
||||
def post_init(self, ros_node: BaseROS2DeviceNode):
|
||||
super().post_init(ros_node)
|
||||
@@ -813,7 +1026,7 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
|
||||
**backend_kwargs,
|
||||
):
|
||||
|
||||
return await super().move_plate(
|
||||
res = await super().move_plate(
|
||||
plate,
|
||||
to,
|
||||
intermediate_locations,
|
||||
@@ -825,6 +1038,12 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
|
||||
target_plate_number = to,
|
||||
**backend_kwargs,
|
||||
)
|
||||
plate.unassign()
|
||||
to.assign_child_resource(plate, location=Coordinate(0, 0, 0))
|
||||
ROS2DeviceNode.run_async_func(self._ros_node.update_resource, True, **{
|
||||
"resources": [self.deck]
|
||||
})
|
||||
return res
|
||||
|
||||
class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
"""PRCXI 9300 的后端实现,继承自 LiquidHandlerBackend。
|
||||
@@ -848,6 +1067,7 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
def __init__(
|
||||
self,
|
||||
tablets_info: list[WorkTablets],
|
||||
plate_positions: dict[int, Coordinate],
|
||||
host: str = "127.0.0.1",
|
||||
port: int = 9999,
|
||||
timeout: float = 10.0,
|
||||
@@ -856,10 +1076,19 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
setup=True,
|
||||
debug=False,
|
||||
matrix_id="",
|
||||
is_9320=False,
|
||||
is_9320=False,
|
||||
x_increase = 0,
|
||||
y_increase = 0,
|
||||
x_offset = 0,
|
||||
y_offset = 0,
|
||||
deck_z = 300,
|
||||
deck_x = 0,
|
||||
deck_y = 0,
|
||||
xy_coupling = 0.0,
|
||||
) -> None:
|
||||
super().__init__()
|
||||
self.tablets_info = tablets_info
|
||||
self.plate_positions = plate_positions
|
||||
self.matrix_id = matrix_id
|
||||
self.api_client = PRCXI9300Api(host, port, timeout, axis, debug, is_9320)
|
||||
self.host, self.port, self.timeout = host, port, timeout
|
||||
@@ -867,6 +1096,15 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
self._execute_setup = setup
|
||||
self.debug = debug
|
||||
self.axis = "Left"
|
||||
self.x_increase = x_increase
|
||||
self.y_increase = y_increase
|
||||
self.xy_coupling = xy_coupling
|
||||
self.x_offset = x_offset
|
||||
self.y_offset = y_offset
|
||||
self.deck_x = deck_x
|
||||
self.deck_y = deck_y
|
||||
self.deck_z = deck_z
|
||||
self.tip_length = 0
|
||||
|
||||
async def shaker_action(self, time: int, module_no: int, amplitude: int, is_wait: bool):
|
||||
step = self.api_client.shaker_action(
|
||||
@@ -896,13 +1134,11 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
|
||||
async def drop_resource(self, drop: ResourceDrop, **backend_kwargs):
|
||||
|
||||
|
||||
plate_number = None
|
||||
target_plate_number = backend_kwargs.get("target_plate_number", None)
|
||||
if target_plate_number is not None:
|
||||
plate_number = int(target_plate_number.name.replace("T", ""))
|
||||
|
||||
|
||||
is_whole_plate = True
|
||||
balance_height = 0
|
||||
if plate_number is None:
|
||||
@@ -920,29 +1156,42 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
self._ros_node = ros_node
|
||||
|
||||
def create_protocol(self, protocol_name):
|
||||
if protocol_name == "":
|
||||
protocol_name = f"protocol_{time.time()}"
|
||||
self.protocol_name = protocol_name
|
||||
self.steps_todo_list = []
|
||||
|
||||
if not len(self.matrix_id):
|
||||
self.matrix_id = str(uuid.uuid4())
|
||||
|
||||
material_list = self.api_client.get_all_materials()
|
||||
material_dict = {material["uuid"]: material for material in material_list}
|
||||
|
||||
work_tablets = []
|
||||
for num, material_id in self.tablets_info.items():
|
||||
work_tablets.append({
|
||||
"Number": num,
|
||||
"Material": material_dict[material_id]
|
||||
})
|
||||
|
||||
self.matrix_info = {
|
||||
"MatrixId": self.matrix_id,
|
||||
"MatrixName": self.matrix_id,
|
||||
"WorkTablets": work_tablets,
|
||||
}
|
||||
# print(json.dumps(self.matrix_info, indent=2))
|
||||
res = self.api_client.add_WorkTablet_Matrix(self.matrix_info)
|
||||
if not res["Success"]:
|
||||
self.matrix_id = ""
|
||||
raise AssertionError(f"Failed to create matrix: {res.get('Message', 'Unknown error')}")
|
||||
print(f"PRCXI9300Backend created matrix with ID: {self.matrix_info['MatrixId']}, result: {res}")
|
||||
|
||||
def run_protocol(self):
|
||||
assert self.is_reset_ok, "PRCXI9300Backend is not reset successfully. Please call setup() first."
|
||||
run_time = time.time()
|
||||
self.matrix_info = MatrixInfo(
|
||||
MatrixId=f"{int(run_time)}",
|
||||
MatrixName=f"protocol_{run_time}",
|
||||
MatrixCount=len(self.tablets_info),
|
||||
WorkTablets=self.tablets_info,
|
||||
solution_id = self.api_client.add_solution(
|
||||
f"protocol_{run_time}", self.matrix_id, self.steps_todo_list
|
||||
)
|
||||
# print(json.dumps(self.matrix_info, indent=2))
|
||||
if not len(self.matrix_id):
|
||||
res = self.api_client.add_WorkTablet_Matrix(self.matrix_info)
|
||||
assert res["Success"], f"Failed to create matrix: {res.get('Message', 'Unknown error')}"
|
||||
print(f"PRCXI9300Backend created matrix with ID: {self.matrix_info['MatrixId']}, result: {res}")
|
||||
solution_id = self.api_client.add_solution(
|
||||
f"protocol_{run_time}", self.matrix_info["MatrixId"], self.steps_todo_list
|
||||
)
|
||||
else:
|
||||
print(f"PRCXI9300Backend using predefined worktable {self.matrix_id}, skipping matrix creation.")
|
||||
solution_id = self.api_client.add_solution(f"protocol_{run_time}", self.matrix_id, self.steps_todo_list)
|
||||
print(f"PRCXI9300Backend created solution with ID: {solution_id}")
|
||||
self.api_client.load_solution(solution_id)
|
||||
print(json.dumps(self.steps_todo_list, indent=2))
|
||||
@@ -985,6 +1234,9 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
else:
|
||||
await asyncio.sleep(1)
|
||||
print("PRCXI9300 reset successfully.")
|
||||
|
||||
self.api_client.update_clamp_jaw_position(self.matrix_id, self.plate_positions)
|
||||
|
||||
except ConnectionRefusedError as e:
|
||||
raise RuntimeError(
|
||||
f"Failed to connect to PRCXI9300 API at {self.host}:{self.port}. "
|
||||
@@ -1033,7 +1285,7 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
PlateNo = plate_indexes[0] + 1
|
||||
hole_col = tip_columns[0] + 1
|
||||
hole_row = 1
|
||||
if self._num_channels == 1:
|
||||
if self.num_channels != 8:
|
||||
hole_row = tipspot_index % 8 + 1
|
||||
|
||||
step = self.api_client.Load(
|
||||
@@ -1046,7 +1298,7 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
blending_times=0,
|
||||
balance_height=0,
|
||||
plate_or_hole=f"H{hole_col}-8,T{PlateNo}",
|
||||
hole_numbers=f"{(hole_col - 1) * 8 + hole_row}" if self._num_channels == 1 else "1,2,3,4,5",
|
||||
hole_numbers=f"{(hole_col - 1) * 8 + hole_row}" if self._num_channels != 8 else "1,2,3,4,5",
|
||||
)
|
||||
self.steps_todo_list.append(step)
|
||||
|
||||
@@ -1107,7 +1359,7 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
PlateNo = plate_indexes[0] + 1
|
||||
hole_col = tip_columns[0] + 1
|
||||
|
||||
if self.channel_num == 1:
|
||||
if self.num_channels != 8:
|
||||
hole_row = tipspot_index % 8 + 1
|
||||
|
||||
step = self.api_client.UnLoad(
|
||||
@@ -1159,7 +1411,7 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
PlateNo = plate_indexes[0] + 1
|
||||
hole_col = tip_columns[0] + 1
|
||||
hole_row = 1
|
||||
if self.num_channels == 1:
|
||||
if self.num_channels != 8:
|
||||
hole_row = tipspot_index % 8 + 1
|
||||
|
||||
assert mix_time > 0
|
||||
@@ -1216,7 +1468,7 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
PlateNo = plate_indexes[0] + 1
|
||||
hole_col = tip_columns[0] + 1
|
||||
hole_row = 1
|
||||
if self.num_channels == 1:
|
||||
if self.num_channels != 8:
|
||||
hole_row = tipspot_index % 8 + 1
|
||||
|
||||
step = self.api_client.Imbibing(
|
||||
@@ -1274,7 +1526,7 @@ class PRCXI9300Backend(LiquidHandlerBackend):
|
||||
hole_col = tip_columns[0] + 1
|
||||
|
||||
hole_row = 1
|
||||
if self.num_channels == 1:
|
||||
if self.num_channels != 8:
|
||||
hole_row = tipspot_index % 8 + 1
|
||||
|
||||
step = self.api_client.Tapping(
|
||||
@@ -1400,10 +1652,10 @@ class PRCXI9300Api:
|
||||
start = False
|
||||
while not success:
|
||||
status = self.step_state_list()
|
||||
if len(status) == 1:
|
||||
start = True
|
||||
if status is None:
|
||||
break
|
||||
if len(status) == 1:
|
||||
start = True
|
||||
if len(status) == 0:
|
||||
break
|
||||
if status[-1]["State"] == 2 and start:
|
||||
@@ -1483,6 +1735,13 @@ class PRCXI9300Api:
|
||||
"""GetWorkTabletMatrixById"""
|
||||
return self.call("IMatrix", "GetWorkTabletMatrixById", [matrix_id])
|
||||
|
||||
def update_clamp_jaw_position(self, target_matrix_id: str, plate_positions: List[Dict[str, Any]]):
|
||||
position_params = {
|
||||
"MatrixId": target_matrix_id,
|
||||
"WorkTablets": plate_positions
|
||||
}
|
||||
return self.call("IMatrix", "UpdateClampJawPosition", [position_params])
|
||||
|
||||
def add_WorkTablet_Matrix(self, matrix: MatrixInfo):
|
||||
return self.call("IMatrix", "AddWorkTabletMatrix2" if self.is_9320 else "AddWorkTabletMatrix", [matrix])
|
||||
|
||||
@@ -1756,82 +2015,82 @@ class DefaultLayout:
|
||||
{
|
||||
"Number": 1,
|
||||
"Code": "T1",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 2,
|
||||
"Code": "T2",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 3,
|
||||
"Code": "T3",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 4,
|
||||
"Code": "T4",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 5,
|
||||
"Code": "T5",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 6,
|
||||
"Code": "T6",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 7,
|
||||
"Code": "T7",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 8,
|
||||
"Code": "T8",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 9,
|
||||
"Code": "T9",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 10,
|
||||
"Code": "T10",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 11,
|
||||
"Code": "T11",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 12,
|
||||
"Code": "T12",
|
||||
"Material": {"uuid": "730067cf07ae43849ddf4034299030e9", "materialEnum": 0},
|
||||
"Material": {"uuid": "730067cf07ae43849ddf4034299030e9"},
|
||||
}, # 这个设置成废液槽,用储液槽表示
|
||||
{
|
||||
"Number": 13,
|
||||
"Code": "T13",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 14,
|
||||
"Code": "T14",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 15,
|
||||
"Code": "T15",
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f", "materialEnum": 0},
|
||||
"Material": {"uuid": "57b1e4711e9e4a32b529f3132fc5931f"},
|
||||
},
|
||||
{
|
||||
"Number": 16,
|
||||
"Code": "T16",
|
||||
"Material": {"uuid": "730067cf07ae43849ddf4034299030e9", "materialEnum": 0},
|
||||
"Material": {"uuid": "730067cf07ae43849ddf4034299030e9"},
|
||||
}, # 这个设置成垃圾桶,用储液槽表示
|
||||
],
|
||||
}
|
||||
|
||||
0
unilabos/devices/xrd_d7mate/__init__.py
Normal file
0
unilabos/devices/xrd_d7mate/__init__.py
Normal file
0
unilabos/devices/zhida_hplc/__init__.py
Normal file
0
unilabos/devices/zhida_hplc/__init__.py
Normal file
@@ -4019,7 +4019,8 @@ liquid_handler:
|
||||
mix_liquid_height: 0.0
|
||||
mix_rate: 0
|
||||
mix_stage: ''
|
||||
mix_times: 0
|
||||
mix_times:
|
||||
- 0
|
||||
mix_vol: 0
|
||||
none_keys:
|
||||
- ''
|
||||
@@ -4175,9 +4176,11 @@ liquid_handler:
|
||||
mix_stage:
|
||||
type: string
|
||||
mix_times:
|
||||
maximum: 2147483647
|
||||
minimum: -2147483648
|
||||
type: integer
|
||||
items:
|
||||
maximum: 2147483647
|
||||
minimum: -2147483648
|
||||
type: integer
|
||||
type: array
|
||||
mix_vol:
|
||||
maximum: 2147483647
|
||||
minimum: -2147483648
|
||||
@@ -5040,7 +5043,8 @@ liquid_handler.biomek:
|
||||
mix_liquid_height: 0.0
|
||||
mix_rate: 0
|
||||
mix_stage: ''
|
||||
mix_times: 0
|
||||
mix_times:
|
||||
- 0
|
||||
mix_vol: 0
|
||||
none_keys:
|
||||
- ''
|
||||
@@ -5183,9 +5187,11 @@ liquid_handler.biomek:
|
||||
mix_stage:
|
||||
type: string
|
||||
mix_times:
|
||||
maximum: 2147483647
|
||||
minimum: -2147483648
|
||||
type: integer
|
||||
items:
|
||||
maximum: 2147483647
|
||||
minimum: -2147483648
|
||||
type: integer
|
||||
type: array
|
||||
mix_vol:
|
||||
maximum: 2147483647
|
||||
minimum: -2147483648
|
||||
@@ -9671,7 +9677,8 @@ liquid_handler.prcxi:
|
||||
mix_liquid_height: 0.0
|
||||
mix_rate: 0
|
||||
mix_stage: ''
|
||||
mix_times: 0
|
||||
mix_times:
|
||||
- 0
|
||||
mix_vol: 0
|
||||
none_keys:
|
||||
- ''
|
||||
@@ -9745,21 +9752,21 @@ liquid_handler.prcxi:
|
||||
- 0
|
||||
handles:
|
||||
input:
|
||||
- data_key: liquid
|
||||
- data_key: sources
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: sources
|
||||
label: sources
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
handler_key: sources_identifier
|
||||
label: 待移动液体
|
||||
- data_key: targets
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: targets
|
||||
label: targets
|
||||
- data_key: liquid
|
||||
data_source: executor
|
||||
handler_key: targets_identifier
|
||||
label: 转移目标
|
||||
- data_key: tip_rack
|
||||
data_source: handle
|
||||
data_type: resource
|
||||
handler_key: tip_rack
|
||||
label: tip_rack
|
||||
handler_key: tip_rack_identifier
|
||||
label: 墙头盒
|
||||
output:
|
||||
- data_key: liquid
|
||||
data_source: handle
|
||||
@@ -9827,9 +9834,11 @@ liquid_handler.prcxi:
|
||||
mix_stage:
|
||||
type: string
|
||||
mix_times:
|
||||
maximum: 2147483647
|
||||
minimum: -2147483648
|
||||
type: integer
|
||||
items:
|
||||
maximum: 2147483647
|
||||
minimum: -2147483648
|
||||
type: integer
|
||||
type: array
|
||||
mix_vol:
|
||||
maximum: 2147483647
|
||||
minimum: -2147483648
|
||||
|
||||
@@ -5792,3 +5792,381 @@ virtual_vacuum_pump:
|
||||
- status
|
||||
type: object
|
||||
version: 1.0.0
|
||||
virtual_workbench:
|
||||
category:
|
||||
- virtual_device
|
||||
class:
|
||||
action_value_mappings:
|
||||
auto-move_to_heating_station:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
material_number: null
|
||||
handles:
|
||||
input:
|
||||
- data_key: material_number
|
||||
data_source: handle
|
||||
data_type: workbench_material
|
||||
handler_key: material_input
|
||||
label: 物料编号
|
||||
output:
|
||||
- data_key: station_id
|
||||
data_source: executor
|
||||
data_type: workbench_station
|
||||
handler_key: heating_station_output
|
||||
label: 加热台ID
|
||||
- data_key: material_number
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: material_number_output
|
||||
label: 物料编号
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 将物料从An位置移动到空闲加热台,返回分配的加热台ID
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
material_number:
|
||||
description: 物料编号,1-5,物料ID自动生成为A{n}
|
||||
type: integer
|
||||
required:
|
||||
- material_number
|
||||
type: object
|
||||
result:
|
||||
description: move_to_heating_station 返回类型
|
||||
properties:
|
||||
material_id:
|
||||
title: Material Id
|
||||
type: string
|
||||
material_number:
|
||||
title: Material Number
|
||||
type: integer
|
||||
message:
|
||||
title: Message
|
||||
type: string
|
||||
station_id:
|
||||
description: 分配的加热台ID
|
||||
title: Station Id
|
||||
type: integer
|
||||
success:
|
||||
title: Success
|
||||
type: boolean
|
||||
required:
|
||||
- success
|
||||
- station_id
|
||||
- material_id
|
||||
- material_number
|
||||
- message
|
||||
title: MoveToHeatingStationResult
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: move_to_heating_station参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-move_to_output:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
material_number: null
|
||||
station_id: null
|
||||
handles:
|
||||
input:
|
||||
- data_key: station_id
|
||||
data_source: handle
|
||||
data_type: workbench_station
|
||||
handler_key: output_station_input
|
||||
label: 加热台ID
|
||||
- data_key: material_number
|
||||
data_source: handle
|
||||
data_type: workbench_material
|
||||
handler_key: output_material_input
|
||||
label: 物料编号
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 将物料从加热台移动到输出位置Cn
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
material_number:
|
||||
description: 物料编号,用于确定输出位置Cn
|
||||
type: integer
|
||||
station_id:
|
||||
description: 加热台ID,1-3,从上一节点传入
|
||||
type: integer
|
||||
required:
|
||||
- station_id
|
||||
- material_number
|
||||
type: object
|
||||
result:
|
||||
description: move_to_output 返回类型
|
||||
properties:
|
||||
material_id:
|
||||
title: Material Id
|
||||
type: string
|
||||
station_id:
|
||||
title: Station Id
|
||||
type: integer
|
||||
success:
|
||||
title: Success
|
||||
type: boolean
|
||||
required:
|
||||
- success
|
||||
- station_id
|
||||
- material_id
|
||||
title: MoveToOutputResult
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: move_to_output参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-prepare_materials:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
count: 5
|
||||
handles:
|
||||
output:
|
||||
- data_key: material_1
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_1
|
||||
label: 实验1
|
||||
- data_key: material_2
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_2
|
||||
label: 实验2
|
||||
- data_key: material_3
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_3
|
||||
label: 实验3
|
||||
- data_key: material_4
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_4
|
||||
label: 实验4
|
||||
- data_key: material_5
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: channel_5
|
||||
label: 实验5
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 批量准备物料 - 虚拟起始节点,生成A1-A5物料,输出5个handle供后续节点使用
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
count:
|
||||
default: 5
|
||||
description: 待生成的物料数量,默认5 (生成 A1-A5)
|
||||
type: integer
|
||||
required: []
|
||||
type: object
|
||||
result:
|
||||
description: prepare_materials 返回类型 - 批量准备物料
|
||||
properties:
|
||||
count:
|
||||
title: Count
|
||||
type: integer
|
||||
material_1:
|
||||
title: Material 1
|
||||
type: integer
|
||||
material_2:
|
||||
title: Material 2
|
||||
type: integer
|
||||
material_3:
|
||||
title: Material 3
|
||||
type: integer
|
||||
material_4:
|
||||
title: Material 4
|
||||
type: integer
|
||||
material_5:
|
||||
title: Material 5
|
||||
type: integer
|
||||
message:
|
||||
title: Message
|
||||
type: string
|
||||
success:
|
||||
title: Success
|
||||
type: boolean
|
||||
required:
|
||||
- success
|
||||
- count
|
||||
- material_1
|
||||
- material_2
|
||||
- material_3
|
||||
- material_4
|
||||
- material_5
|
||||
- message
|
||||
title: PrepareMaterialsResult
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: prepare_materials参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
auto-start_heating:
|
||||
feedback: {}
|
||||
goal: {}
|
||||
goal_default:
|
||||
material_number: null
|
||||
station_id: null
|
||||
handles:
|
||||
input:
|
||||
- data_key: station_id
|
||||
data_source: handle
|
||||
data_type: workbench_station
|
||||
handler_key: station_id_input
|
||||
label: 加热台ID
|
||||
- data_key: material_number
|
||||
data_source: handle
|
||||
data_type: workbench_material
|
||||
handler_key: material_number_input
|
||||
label: 物料编号
|
||||
output:
|
||||
- data_key: station_id
|
||||
data_source: executor
|
||||
data_type: workbench_station
|
||||
handler_key: heating_done_station
|
||||
label: 加热完成-加热台ID
|
||||
- data_key: material_number
|
||||
data_source: executor
|
||||
data_type: workbench_material
|
||||
handler_key: heating_done_material
|
||||
label: 加热完成-物料编号
|
||||
placeholder_keys: {}
|
||||
result: {}
|
||||
schema:
|
||||
description: 启动指定加热台的加热程序
|
||||
properties:
|
||||
feedback: {}
|
||||
goal:
|
||||
properties:
|
||||
material_number:
|
||||
description: 物料编号,从上一节点传入
|
||||
type: integer
|
||||
station_id:
|
||||
description: 加热台ID,1-3,从上一节点传入
|
||||
type: integer
|
||||
required:
|
||||
- station_id
|
||||
- material_number
|
||||
type: object
|
||||
result:
|
||||
description: start_heating 返回类型
|
||||
properties:
|
||||
material_id:
|
||||
title: Material Id
|
||||
type: string
|
||||
material_number:
|
||||
title: Material Number
|
||||
type: integer
|
||||
message:
|
||||
title: Message
|
||||
type: string
|
||||
station_id:
|
||||
title: Station Id
|
||||
type: integer
|
||||
success:
|
||||
title: Success
|
||||
type: boolean
|
||||
required:
|
||||
- success
|
||||
- station_id
|
||||
- material_id
|
||||
- material_number
|
||||
- message
|
||||
title: StartHeatingResult
|
||||
type: object
|
||||
required:
|
||||
- goal
|
||||
title: start_heating参数
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
module: unilabos.devices.virtual.workbench:VirtualWorkbench
|
||||
status_types:
|
||||
active_tasks_count: int
|
||||
arm_current_task: str
|
||||
arm_state: str
|
||||
heating_station_1_material: str
|
||||
heating_station_1_progress: float
|
||||
heating_station_1_state: str
|
||||
heating_station_2_material: str
|
||||
heating_station_2_progress: float
|
||||
heating_station_2_state: str
|
||||
heating_station_3_material: str
|
||||
heating_station_3_progress: float
|
||||
heating_station_3_state: str
|
||||
message: str
|
||||
status: str
|
||||
type: python
|
||||
config_info: []
|
||||
description: Virtual Workbench with 1 robotic arm and 3 heating stations for concurrent
|
||||
material processing
|
||||
handles: []
|
||||
icon: ''
|
||||
init_param_schema:
|
||||
config:
|
||||
properties:
|
||||
config:
|
||||
type: string
|
||||
device_id:
|
||||
type: string
|
||||
required: []
|
||||
type: object
|
||||
data:
|
||||
properties:
|
||||
active_tasks_count:
|
||||
type: integer
|
||||
arm_current_task:
|
||||
type: string
|
||||
arm_state:
|
||||
type: string
|
||||
heating_station_1_material:
|
||||
type: string
|
||||
heating_station_1_progress:
|
||||
type: number
|
||||
heating_station_1_state:
|
||||
type: string
|
||||
heating_station_2_material:
|
||||
type: string
|
||||
heating_station_2_progress:
|
||||
type: number
|
||||
heating_station_2_state:
|
||||
type: string
|
||||
heating_station_3_material:
|
||||
type: string
|
||||
heating_station_3_progress:
|
||||
type: number
|
||||
heating_station_3_state:
|
||||
type: string
|
||||
message:
|
||||
type: string
|
||||
status:
|
||||
type: string
|
||||
required:
|
||||
- status
|
||||
- arm_state
|
||||
- arm_current_task
|
||||
- heating_station_1_state
|
||||
- heating_station_1_material
|
||||
- heating_station_1_progress
|
||||
- heating_station_2_state
|
||||
- heating_station_2_material
|
||||
- heating_station_2_progress
|
||||
- heating_station_3_state
|
||||
- heating_station_3_material
|
||||
- heating_station_3_progress
|
||||
- active_tasks_count
|
||||
- message
|
||||
type: object
|
||||
version: 1.0.0
|
||||
|
||||
@@ -597,6 +597,8 @@ def resource_plr_to_ulab(resource_plr: "ResourcePLR", parent_name: str = None, w
|
||||
"tube": "tube",
|
||||
"bottle_carrier": "bottle_carrier",
|
||||
"plate_adapter": "plate_adapter",
|
||||
"electrode_sheet": "electrode_sheet",
|
||||
"material_hole": "material_hole",
|
||||
}
|
||||
if source in replace_info:
|
||||
return replace_info[source]
|
||||
|
||||
@@ -79,6 +79,7 @@ class ItemizedCarrier(ResourcePLR):
|
||||
category: Optional[str] = "carrier",
|
||||
model: Optional[str] = None,
|
||||
invisible_slots: Optional[str] = None,
|
||||
content_type: Optional[List[str]] = ["bottle", "container", "tube", "bottle_carrier", "tip_rack"],
|
||||
):
|
||||
super().__init__(
|
||||
name=name,
|
||||
@@ -92,6 +93,7 @@ class ItemizedCarrier(ResourcePLR):
|
||||
self.num_items_x, self.num_items_y, self.num_items_z = num_items_x, num_items_y, num_items_z
|
||||
self.invisible_slots = [] if invisible_slots is None else invisible_slots
|
||||
self.layout = "z-y" if self.num_items_z > 1 and self.num_items_x == 1 else "x-z" if self.num_items_z > 1 and self.num_items_y == 1 else "x-y"
|
||||
self.content_type = content_type
|
||||
|
||||
if isinstance(sites, dict):
|
||||
sites = sites or {}
|
||||
@@ -419,7 +421,7 @@ class ItemizedCarrier(ResourcePLR):
|
||||
self[identifier] if isinstance(self[identifier], str) else None,
|
||||
"position": {"x": location.x, "y": location.y, "z": location.z},
|
||||
"size": self.child_size[identifier],
|
||||
"content_type": ["bottle", "container", "tube", "bottle_carrier", "tip_rack"]
|
||||
"content_type": self.content_type
|
||||
} for identifier, location in self.child_locations.items()]
|
||||
}
|
||||
|
||||
|
||||
@@ -361,7 +361,14 @@ def convert_to_ros_msg(ros_msg_type: Union[Type, Any], obj: Any) -> Any:
|
||||
if hasattr(ros_msg, key):
|
||||
attr = getattr(ros_msg, key)
|
||||
if isinstance(attr, (float, int, str, bool)):
|
||||
setattr(ros_msg, key, type(attr)(value))
|
||||
# 处理list类型的值,取第一个元素或抛出错误
|
||||
if isinstance(value, list):
|
||||
if len(value) > 0:
|
||||
setattr(ros_msg, key, type(attr)(value[0]))
|
||||
else:
|
||||
setattr(ros_msg, key, type(attr)()) # 使用默认值
|
||||
else:
|
||||
setattr(ros_msg, key, type(attr)(value))
|
||||
elif isinstance(attr, (list, tuple)) and isinstance(value, Iterable):
|
||||
td = ros_msg.SLOT_TYPES[ind].value_type
|
||||
if isinstance(td, NamespacedType):
|
||||
@@ -374,9 +381,35 @@ def convert_to_ros_msg(ros_msg_type: Union[Type, Any], obj: Any) -> Any:
|
||||
setattr(ros_msg, key, []) # FIXME
|
||||
elif "array.array" in str(type(attr)):
|
||||
if attr.typecode == "f" or attr.typecode == "d":
|
||||
# 如果是单个值,转换为列表
|
||||
if value is None:
|
||||
value = []
|
||||
elif not isinstance(value, Iterable) or isinstance(value, (str, bytes)):
|
||||
value = [value]
|
||||
setattr(ros_msg, key, [float(i) for i in value])
|
||||
else:
|
||||
setattr(ros_msg, key, value)
|
||||
# 对于整数数组,需要确保是序列且每个值在有效范围内
|
||||
if value is None:
|
||||
value = []
|
||||
elif not isinstance(value, Iterable) or isinstance(value, (str, bytes)):
|
||||
# 如果是单个值,转换为列表
|
||||
value = [value]
|
||||
# 确保每个整数值在有效范围内(-2147483648 到 2147483647)
|
||||
converted_value = []
|
||||
for i in value:
|
||||
if i is None:
|
||||
continue # 跳过 None 值
|
||||
if isinstance(i, (int, float)):
|
||||
int_val = int(i)
|
||||
# 确保在 int32 范围内
|
||||
if int_val < -2147483648:
|
||||
int_val = -2147483648
|
||||
elif int_val > 2147483647:
|
||||
int_val = 2147483647
|
||||
converted_value.append(int_val)
|
||||
else:
|
||||
converted_value.append(i)
|
||||
setattr(ros_msg, key, converted_value)
|
||||
else:
|
||||
nested_ros_msg = convert_to_ros_msg(type(attr)(), value)
|
||||
setattr(ros_msg, key, nested_ros_msg)
|
||||
|
||||
@@ -1320,19 +1320,32 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
resource_inputs = action_kwargs[k] if is_sequence else [action_kwargs[k]]
|
||||
|
||||
# 批量查询资源
|
||||
queried_resources = []
|
||||
for resource_data in resource_inputs:
|
||||
queried_resources: list = [None] * len(resource_inputs)
|
||||
uuid_indices: list[tuple[int, str, dict]] = [] # (index, uuid, resource_data)
|
||||
|
||||
# 第一遍:处理没有uuid的资源,收集有uuid的资源信息
|
||||
for idx, resource_data in enumerate(resource_inputs):
|
||||
unilabos_uuid = resource_data.get("data", {}).get("unilabos_uuid")
|
||||
if unilabos_uuid is None:
|
||||
plr_resource = await self.get_resource_with_dir(
|
||||
resource_id=resource_data["id"], with_children=True
|
||||
)
|
||||
if "sample_id" in resource_data:
|
||||
plr_resource.unilabos_extra["sample_uuid"] = resource_data["sample_id"]
|
||||
queried_resources[idx] = plr_resource
|
||||
else:
|
||||
resource_tree = await self.get_resource([unilabos_uuid])
|
||||
plr_resource = resource_tree.to_plr_resources()[0]
|
||||
if "sample_id" in resource_data:
|
||||
plr_resource.unilabos_extra["sample_uuid"] = resource_data["sample_id"]
|
||||
queried_resources.append(plr_resource)
|
||||
uuid_indices.append((idx, unilabos_uuid, resource_data))
|
||||
|
||||
# 第二遍:批量查询有uuid的资源
|
||||
if uuid_indices:
|
||||
uuids = [item[1] for item in uuid_indices]
|
||||
resource_tree = await self.get_resource(uuids)
|
||||
plr_resources = resource_tree.to_plr_resources()
|
||||
for i, (idx, _, resource_data) in enumerate(uuid_indices):
|
||||
plr_resource = plr_resources[i]
|
||||
if "sample_id" in resource_data:
|
||||
plr_resource.unilabos_extra["sample_uuid"] = resource_data["sample_id"]
|
||||
queried_resources[idx] = plr_resource
|
||||
|
||||
self.lab_logger().debug(f"资源查询结果: 共 {len(queried_resources)} 个资源")
|
||||
|
||||
@@ -1468,6 +1481,8 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
if isinstance(rs, list):
|
||||
for r in rs:
|
||||
res = self.resource_tracker.parent_resource(r) # 获取 resource 对象
|
||||
elif type(rs).__name__ == "ResourceHolder":
|
||||
pass
|
||||
else:
|
||||
res = self.resource_tracker.parent_resource(rs)
|
||||
if id(res) not in seen:
|
||||
|
||||
@@ -795,6 +795,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
goal_msg = convert_to_ros_msg(action_client._action_type.Goal(), action_kwargs)
|
||||
|
||||
self.lab_logger().info(f"[Host Node] Sending goal for {action_id}: {str(goal_msg)[:1000]}")
|
||||
self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {action_kwargs}")
|
||||
self.lab_logger().trace(f"[Host Node] Sending goal for {action_id}: {goal_msg}")
|
||||
action_client.wait_for_server()
|
||||
goal_uuid_obj = UUID(uuid=list(u.bytes))
|
||||
|
||||
836
unilabos/test/experiments/prcxi_9320_no_res.json
Normal file
836
unilabos/test/experiments/prcxi_9320_no_res.json
Normal file
@@ -0,0 +1,836 @@
|
||||
{
|
||||
"nodes": [
|
||||
{
|
||||
"id": "PRCXI",
|
||||
"name": "PRCXI",
|
||||
"type": "device",
|
||||
"class": "liquid_handler.prcxi",
|
||||
"parent": "",
|
||||
"pose": {
|
||||
"size": {
|
||||
"width": 550,
|
||||
"height": 400,
|
||||
"depth": 0
|
||||
}
|
||||
},
|
||||
"config": {
|
||||
"axis": "Left",
|
||||
"deck": {
|
||||
"_resource_type": "unilabos.devices.liquid_handling.prcxi.prcxi:PRCXI9300Deck",
|
||||
"_resource_child_name": "PRCXI_Deck"
|
||||
},
|
||||
"host": "10.20.30.184",
|
||||
"port": 9999,
|
||||
"debug": false,
|
||||
"setup": false,
|
||||
"is_9320": true,
|
||||
"timeout": 10,
|
||||
"matrix_id": "5de524d0-3f95-406c-86dd-f83626ebc7cb",
|
||||
"simulator": false,
|
||||
"channel_num": 2
|
||||
},
|
||||
"data": {
|
||||
"reset_ok": true
|
||||
},
|
||||
"schema": {},
|
||||
"description": "",
|
||||
"model": null,
|
||||
"position": {
|
||||
"x": 0,
|
||||
"y": 700,
|
||||
"z": 0
|
||||
}
|
||||
},
|
||||
{
|
||||
"id": "PRCXI_Deck",
|
||||
"name": "PRCXI_Deck",
|
||||
|
||||
"children": [],
|
||||
"parent": "PRCXI",
|
||||
"type": "deck",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300Deck",
|
||||
"size_x": 550,
|
||||
"size_y": 400,
|
||||
"size_z": 17,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "deck",
|
||||
"barcode": null
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T1",
|
||||
"name": "T1",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 5,
|
||||
"y": 301,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T1",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T2",
|
||||
"name": "T2",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 142.5,
|
||||
"y": 301,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T2",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T3",
|
||||
"name": "T3",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 280,
|
||||
"y": 301,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T3",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T4",
|
||||
"name": "T4",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 417.5,
|
||||
"y": 301,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 94,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T4",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T5",
|
||||
"name": "T5",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 5,
|
||||
"y": 205,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T5",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T6",
|
||||
"name": "T6",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 142.5,
|
||||
"y": 205,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T6",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T7",
|
||||
"name": "T7",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 280,
|
||||
"y": 205,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T7",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T8",
|
||||
"name": "T8",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 417.5,
|
||||
"y": 205,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T8",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T9",
|
||||
"name": "T9",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 5,
|
||||
"y": 109,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T9",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T10",
|
||||
"name": "T10",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 142.5,
|
||||
"y": 109,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T10",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T11",
|
||||
"name": "T11",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 280,
|
||||
"y": 109,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T11",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T12",
|
||||
"name": "T12",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 417.5,
|
||||
"y": 109,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T12",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T13",
|
||||
"name": "T13",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 5,
|
||||
"y": 13,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T13",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T14",
|
||||
"name": "T14",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 142.5,
|
||||
"y": 13,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T14",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T15",
|
||||
"name": "T15",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 280,
|
||||
"y": 13,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T15",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "T16",
|
||||
"name": "T16",
|
||||
"children": [],
|
||||
"parent": "PRCXI_Deck",
|
||||
"type": "plate",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 417.5,
|
||||
"y": 13,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300PlateAdapterSite",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 28,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "plate",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
|
||||
"sites": [
|
||||
{
|
||||
"label": "T16",
|
||||
"visible": true,
|
||||
"position": { "x": 0, "y": 0, "z": 0 },
|
||||
"size": { "width": 128.0, "height": 86, "depth": 0 },
|
||||
"content_type": [
|
||||
"plate",
|
||||
"tip_rack",
|
||||
"plates",
|
||||
"tip_racks",
|
||||
"tube_rack"
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"data": {}
|
||||
},
|
||||
{
|
||||
"id": "trash",
|
||||
"name": "trash",
|
||||
|
||||
"children": [],
|
||||
"parent": "T16",
|
||||
"type": "trash",
|
||||
"class": "",
|
||||
"position": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0
|
||||
},
|
||||
"config": {
|
||||
"type": "PRCXI9300Trash",
|
||||
"size_x": 127.5,
|
||||
"size_y": 86,
|
||||
"size_z": 10,
|
||||
"rotation": {
|
||||
"x": 0,
|
||||
"y": 0,
|
||||
"z": 0,
|
||||
"type": "Rotation"
|
||||
},
|
||||
"category": "trash",
|
||||
"model": null,
|
||||
"barcode": null,
|
||||
"max_volume": "Infinity",
|
||||
"material_z_thickness": 0,
|
||||
"compute_volume_from_height": null,
|
||||
"compute_height_from_volume": null
|
||||
},
|
||||
"data": {
|
||||
"liquids": [],
|
||||
"pending_liquids": [],
|
||||
"liquid_history": [],
|
||||
"Material": {
|
||||
"uuid": "730067cf07ae43849ddf4034299030e9"
|
||||
}
|
||||
}
|
||||
}
|
||||
],
|
||||
"edges": []
|
||||
}
|
||||
File diff suppressed because it is too large
Load Diff
@@ -24,6 +24,7 @@ class EnvironmentChecker:
|
||||
"msgcenterpy": "msgcenterpy",
|
||||
"opentrons_shared_data": "opentrons_shared_data",
|
||||
"typing_extensions": "typing_extensions",
|
||||
"crcmod": "crcmod-plus",
|
||||
}
|
||||
|
||||
# 特殊安装包(需要特殊处理的包)
|
||||
|
||||
18
unilabos/utils/requirements.txt
Normal file
18
unilabos/utils/requirements.txt
Normal file
@@ -0,0 +1,18 @@
|
||||
networkx
|
||||
typing_extensions
|
||||
websockets
|
||||
msgcenterpy>=0.1.5
|
||||
opentrons_shared_data
|
||||
pint
|
||||
fastapi
|
||||
jinja2
|
||||
requests
|
||||
uvicorn
|
||||
pyautogui
|
||||
opcua
|
||||
pyserial
|
||||
pandas
|
||||
crcmod-plus
|
||||
pymodbus
|
||||
matplotlib
|
||||
pylibftdi
|
||||
@@ -2,7 +2,7 @@
|
||||
<?xml-model href="http://download.ros.org/schema/package_format3.xsd" schematypens="http://www.w3.org/2001/XMLSchema"?>
|
||||
<package format="3">
|
||||
<name>unilabos_msgs</name>
|
||||
<version>0.10.15</version>
|
||||
<version>0.10.17</version>
|
||||
<description>ROS2 Messages package for unilabos devices</description>
|
||||
<maintainer email="changjh@pku.edu.cn">Junhan Chang</maintainer>
|
||||
<maintainer email="18435084+Xuwznln@users.noreply.github.com">Xuwznln</maintainer>
|
||||
|
||||
Reference in New Issue
Block a user