Update work_station.yaml (#60)

* Update work_station.yaml

* Checklist里面有XDL跟protocol之间没对齐的问题，工作量有点大找时间写完

.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,35 @@
+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Describe the bug**
+A clear and concise description of what the bug is. The bug may results in:
+        - abnormal interruption of the program,
+        - systematic or randomized numerical error, or
+        - relatively low efficiency.
+
+**To Reproduce**
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '....'
+3. Scroll down to '....'
+4. See error
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Desktop (please complete the following information):**
+ - OS: [e.g. iOS]
+ - Browser [e.g. chrome, safari]
+ - Version [e.g. 22]
+
+**Additional context**
+Add any other context about the problem here.

.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,20 @@
+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

.github/workflows/multi-platform-build.yml

@@ -0,0 +1,132 @@
+name: Multi-Platform Conda Build
+
+on:
+  push:
+    branches: [ main, dev ]
+    tags: [ 'v*' ]
+  pull_request:
+    branches: [ main, dev ]
+  workflow_dispatch:
+    inputs:
+      platforms:
+        description: '选择构建平台 (逗号分隔): linux-64, osx-64, osx-arm64, win-64'
+        required: false
+        default: 'osx-arm64'
+
+jobs:
+  build:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+        - os: ubuntu-latest
+          platform: linux-64
+          env_file: unilabos-linux-64.yaml
+        - os: macos-13 # Intel
+          platform: osx-64
+          env_file: unilabos-osx-64.yaml
+        - os: macos-latest # ARM64
+          platform: osx-arm64
+          env_file: unilabos-osx-arm64.yaml
+        - os: windows-latest
+          platform: win-64
+          env_file: unilabos-win64.yaml
+
+    runs-on: ${{ matrix.os }}
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+
+    - name: Check if platform should be built
+      id: should_build
+      run: |
+        if [[ "${{ github.event_name }}" != "workflow_dispatch" ]]; then
+          echo "should_build=true" >> $GITHUB_OUTPUT
+        elif [[ -z "${{ github.event.inputs.platforms }}" ]]; then
+          echo "should_build=true" >> $GITHUB_OUTPUT
+        elif [[ "${{ github.event.inputs.platforms }}" == *"${{ matrix.platform }}"* ]]; then
+          echo "should_build=true" >> $GITHUB_OUTPUT
+        else
+          echo "should_build=false" >> $GITHUB_OUTPUT
+        fi
+
+    - name: Setup Miniconda
+      if: steps.should_build.outputs.should_build == 'true'
+      uses: conda-incubator/setup-miniconda@v3
+      with:
+        miniconda-version: "latest"
+        channels: conda-forge,robostack-staging,defaults
+        channel-priority: strict
+        activate-environment: build-env
+        auto-activate-base: false
+        auto-update-conda: false
+        show-channel-urls: true
+
+    - name: Install boa and build tools
+      if: steps.should_build.outputs.should_build == 'true'
+      run: |
+        conda install -c conda-forge boa conda-build
+
+    - name: Show environment info
+      if: steps.should_build.outputs.should_build == 'true'
+      run: |
+        conda info
+        conda list | grep -E "(boa|conda-build)"
+        echo "Platform: ${{ matrix.platform }}"
+        echo "OS: ${{ matrix.os }}"
+
+    - name: Build conda package
+      if: steps.should_build.outputs.should_build == 'true'
+      run: |
+        if [[ "${{ matrix.platform }}" == "osx-arm64" ]]; then
+          boa build -m ./recipes/conda_build_config.yaml -m ./recipes/macos_sdk_config.yaml ./recipes/ros-humble-unilabos-msgs
+        else
+          boa build -m ./recipes/conda_build_config.yaml ./recipes/ros-humble-unilabos-msgs
+        fi
+
+    - name: List built packages
+      if: steps.should_build.outputs.should_build == 'true'
+      run: |
+        echo "Built packages in conda-bld:"
+        find $CONDA_PREFIX/conda-bld -name "*.tar.bz2" | head -10
+        ls -la $CONDA_PREFIX/conda-bld/${{ matrix.platform }}/ || echo "${{ matrix.platform }} directory not found"
+        ls -la $CONDA_PREFIX/conda-bld/noarch/ || echo "noarch directory not found"
+        echo "CONDA_PREFIX: $CONDA_PREFIX"
+        echo "Full path would be: $CONDA_PREFIX/conda-bld/**/*.tar.bz2"
+
+    - name: Prepare artifacts for upload
+      if: steps.should_build.outputs.should_build == 'true'
+      run: |
+        mkdir -p ${{ runner.temp }}/conda-packages
+        find $CONDA_PREFIX/conda-bld -name "*.tar.bz2" -exec cp {} ${{ runner.temp }}/conda-packages/ \;
+        echo "Copied files to temp directory:"
+        ls -la ${{ runner.temp }}/conda-packages/
+
+    - name: Upload conda package artifacts
+      if: steps.should_build.outputs.should_build == 'true'
+      uses: actions/upload-artifact@v4
+      with:
+        name: conda-package-${{ matrix.platform }}
+        path: ${{ runner.temp }}/conda-packages
+        if-no-files-found: warn
+        retention-days: 30
+
+    - name: Create release assets (on tags)
+      if: steps.should_build.outputs.should_build == 'true' && startsWith(github.ref, 'refs/tags/')
+      run: |
+        mkdir -p release-assets
+        find $CONDA_PREFIX/conda-bld -name "*.tar.bz2" -exec cp {} release-assets/ \;
+
+    - name: Upload to release
+      if: steps.should_build.outputs.should_build == 'true' && startsWith(github.ref, 'refs/tags/')
+      uses: softprops/action-gh-release@v1
+      with:
+        files: release-assets/*
+        draft: false
+        prerelease: false

.gitignore

@@ -6,6 +6,7 @@ __pycache__/
 .vscode
 *.py[cod]
 *$py.class
+service
 
 # C extensions
 *.so
@@ -229,6 +230,11 @@ CATKIN_IGNORE
 
 .DS_Store
 
-local_config.py
+/**/local_config.py
 
-*.graphml
+*.graphml
+unilabos/device_mesh/view_robot.rviz
+
+
+# Certs
+**/.certs

MANIFEST.in

@@ -0,0 +1,5 @@
+recursive-include unilabos/registry *.yaml
+recursive-include unilabos/app/web *.html
+recursive-include unilabos/app/web *.css
+recursive-include unilabos/device_mesh/devices *
+recursive-include unilabos/device_mesh/resources *

README.md

@@ -1 +1,93 @@
-# Uni-Lab-OS
+<div align="center">
+  <img src="docs/logo.png" alt="Uni-Lab Logo" width="200"/>
+</div>
+
+# Uni-Lab-OS
+
+<!-- Language switcher -->
+**English** | [中文](README_zh.md)
+
+[![GitHub Stars](https://img.shields.io/github/stars/dptech-corp/Uni-Lab-OS.svg)](https://github.com/dptech-corp/Uni-Lab-OS/stargazers)
+[![GitHub Forks](https://img.shields.io/github/forks/dptech-corp/Uni-Lab-OS.svg)](https://github.com/dptech-corp/Uni-Lab-OS/network/members)
+[![GitHub Issues](https://img.shields.io/github/issues/dptech-corp/Uni-Lab-OS.svg)](https://github.com/dptech-corp/Uni-Lab-OS/issues)
+[![GitHub License](https://img.shields.io/github/license/dptech-corp/Uni-Lab-OS.svg)](https://github.com/dptech-corp/Uni-Lab-OS/blob/main/LICENSE)
+
+Uni-Lab-OS is a platform for laboratory automation, designed to connect and control various experimental equipment, enabling automation and standardization of experimental workflows.
+
+## 🏆 Competition
+
+Join the [Intelligent Organic Chemistry Synthesis Competition](https://bohrium.dp.tech/competitions/1451645258) to explore automated synthesis with Uni-Lab-OS!
+
+## Key Features
+
+- Multi-device integration management
+- Automated experimental workflows
+- Cloud connectivity capabilities
+- Flexible configuration system
+- Support for multiple experimental protocols
+
+## Documentation
+
+Detailed documentation can be found at:
+
+- [Online Documentation](https://readthedocs.dp.tech/Uni-Lab/v0.8.0/)
+
+## Quick Start
+
+1. Configure Conda Environment
+
+Uni-Lab-OS recommends using `mamba` for environment management. Choose the appropriate environment file for your operating system:
+
+```bash
+# Create new environment
+mamba env create -f unilabos-[YOUR_OS].yaml
+mamba activate unilab
+
+# Or update existing environment
+# Where `[YOUR_OS]` can be `win64`, `linux-64`, `osx-64`, or `osx-arm64`.
+conda env update --file unilabos-[YOUR_OS].yml -n environment_name
+
+# Currently, you need to install the `unilabos_msgs` package
+# You can download the system-specific package from the Release page
+conda install ros-humble-unilabos-msgs-0.9.8-xxxxx.tar.bz2
+
+# Install PyLabRobot and other prerequisites
+git clone https://github.com/PyLabRobot/pylabrobot plr_repo
+cd plr_repo
+pip install .[opentrons]
+```
+
+2. Install Uni-Lab-OS:
+
+```bash
+# Clone the repository
+git clone https://github.com/dptech-corp/Uni-Lab-OS.git
+cd Uni-Lab-OS
+
+# Install Uni-Lab-OS
+pip install .
+```
+
+3. Start Uni-Lab System:
+
+Please refer to [Documentation - Boot Examples](https://readthedocs.dp.tech/Uni-Lab/v0.8.0/boot_examples/index.html)
+
+## Message Format
+
+Uni-Lab-OS uses pre-built `unilabos_msgs` for system communication. You can find the built versions on the [GitHub Releases](https://github.com/dptech-corp/Uni-Lab-OS/releases) page.
+
+## License
+
+This project is licensed under GPL-3.0 - see the [LICENSE](LICENSE) file for details.
+
+## Project Statistics
+
+### Stars Trend
+
+<a href="https://star-history.com/#dptech-corp/Uni-Lab-OS&Date">
+  <img src="https://api.star-history.com/svg?repos=dptech-corp/Uni-Lab-OS&type=Date" alt="Star History Chart" width="600">
+</a>
+
+## Contact Us
+
+- GitHub Issues: [https://github.com/dptech-corp/Uni-Lab-OS/issues](https://github.com/dptech-corp/Uni-Lab-OS/issues)

README_zh.md

@@ -0,0 +1,93 @@
+<div align="center">
+  <img src="docs/logo.png" alt="Uni-Lab Logo" width="200"/>
+</div>
+
+# Uni-Lab-OS
+
+<!-- Language switcher -->
+[English](README.md) | **中文**
+
+[![GitHub Stars](https://img.shields.io/github/stars/dptech-corp/Uni-Lab-OS.svg)](https://github.com/dptech-corp/Uni-Lab-OS/stargazers)
+[![GitHub Forks](https://img.shields.io/github/forks/dptech-corp/Uni-Lab-OS.svg)](https://github.com/dptech-corp/Uni-Lab-OS/network/members)
+[![GitHub Issues](https://img.shields.io/github/issues/dptech-corp/Uni-Lab-OS.svg)](https://github.com/dptech-corp/Uni-Lab-OS/issues)
+[![GitHub License](https://img.shields.io/github/license/dptech-corp/Uni-Lab-OS.svg)](https://github.com/dptech-corp/Uni-Lab-OS/blob/main/LICENSE)
+
+Uni-Lab-OS是一个用于实验室自动化的综合平台，旨在连接和控制各种实验设备，实现实验流程的自动化和标准化。
+
+## 🏆 比赛
+
+欢迎参加[有机化学合成智能实验大赛](https://bohrium.dp.tech/competitions/1451645258)，使用 Uni-Lab-OS 探索自动化合成！
+
+## 核心特点
+
+- 多设备集成管理
+- 自动化实验流程
+- 云端连接能力
+- 灵活的配置系统
+- 支持多种实验协议
+
+## 文档
+
+详细文档可在以下位置找到:
+
+- [在线文档](https://readthedocs.dp.tech/Uni-Lab/v0.8.0/)
+
+## 快速开始
+
+1. 配置Conda环境
+
+Uni-Lab-OS 建议使用 `mamba` 管理环境。根据您的操作系统选择适当的环境文件:
+
+```bash
+# 创建新环境
+mamba env create -f unilabos-[YOUR_OS].yaml
+mamba activate unilab
+
+# 或更新现有环境
+# 其中 `[YOUR_OS]` 可以是 `win64`, `linux-64`, `osx-64`, 或 `osx-arm64`。
+conda env update --file unilabos-[YOUR_OS].yml -n 环境名
+
+# 现阶段，需要安装 `unilabos_msgs` 包
+# 可以前往 Release 页面下载系统对应的包进行安装
+conda install ros-humble-unilabos-msgs-0.9.8-xxxxx.tar.bz2
+
+# 安装PyLabRobot等前置
+git clone https://github.com/PyLabRobot/pylabrobot plr_repo
+cd plr_repo
+pip install .[opentrons]
+```
+
+2. 安装 Uni-Lab-OS:
+
+```bash
+# 克隆仓库
+git clone https://github.com/dptech-corp/Uni-Lab-OS.git
+cd Uni-Lab-OS
+
+# 安装 Uni-Lab-OS
+pip install .
+```
+
+3. 启动 Uni-Lab 系统:
+
+请见[文档-启动样例](https://readthedocs.dp.tech/Uni-Lab/v0.8.0/boot_examples/index.html)
+
+## 消息格式
+
+Uni-Lab-OS 使用预构建的 `unilabos_msgs` 进行系统通信。您可以在 [GitHub Releases](https://github.com/dptech-corp/Uni-Lab-OS/releases) 页面找到已构建的版本。
+
+## 许可证
+
+此项目采用 GPL-3.0 许可 - 详情请参阅 [LICENSE](LICENSE) 文件。
+
+## 项目统计
+
+### Stars 趋势
+
+<a href="https://star-history.com/#dptech-corp/Uni-Lab-OS&Date">
+  <img src="https://api.star-history.com/svg?repos=dptech-corp/Uni-Lab-OS&type=Date" alt="Star History Chart" width="600">
+</a>
+
+## 联系我们
+
+- GitHub Issues: [https://github.com/dptech-corp/Uni-Lab-OS/issues](https://github.com/dptech-corp/Uni-Lab-OS/issues) 

docs/user_guide/configuration.md

@@ -18,7 +18,7 @@ Uni-Lab支持Python格式的配置文件，它比YAML或JSON提供更多的灵
 from dataclasses import dataclass
 
 # 配置类定义
-@dataclass
+
 class MQConfig:
     """MQTT 配置类"""
     lab_id: str = "YOUR_LAB_ID"
@@ -34,7 +34,7 @@ class MQConfig:
 MQTT配置用于连接消息队列服务，是Uni-Lab与云端通信的主要方式。
 
 ```python
-@dataclass
+
 class MQConfig:
     """MQTT 配置类"""
     lab_id: str = "7AAEDBEA"  # 实验室唯一标识
@@ -46,9 +46,9 @@ class MQConfig:
     port: int = 8883
     
     # 可以直接提供证书文件路径
-    ca_file: str = "/path/to/ca.pem"
-    cert_file: str = "/path/to/cert.pem"
-    key_file: str = "/path/to/key.pem"
+    ca_file: str = "/path/to/ca.pem"  # 相对config.py所在目录的路径
+    cert_file: str = "/path/to/cert.pem"  # 相对config.py所在目录的路径
+    key_file: str = "/path/to/key.pem"  # 相对config.py所在目录的路径
     
     # 或者直接提供证书内容
     ca_content: str = ""
@@ -74,22 +74,18 @@ MQTT连接支持两种方式配置证书：
 配置ROS消息转换器需要加载的模块：
 
 ```python
-@dataclass
+
 class ROSConfig:
     """ROS模块配置"""
-    modules: list = None
-    
-    def __post_init__(self):
-        if self.modules is None:
-            self.modules = [
-                "std_msgs.msg",
-                "geometry_msgs.msg",
-                "control_msgs.msg",
-                "control_msgs.action",
-                "nav2_msgs.action",
-                "unilabos_msgs.msg",
-                "unilabos_msgs.action",
-            ]
+    modules = [
+        "std_msgs.msg",
+        "geometry_msgs.msg",
+        "control_msgs.msg",
+        "control_msgs.action",
+        "nav2_msgs.action",
+        "unilabos_msgs.msg",
+        "unilabos_msgs.action",
+    ]
 ```
 
 您可以根据需要添加其他ROS模块。
@@ -106,14 +102,7 @@ class ROSConfig:
 unilab --config path/to/your/config.py
 ```
 
-## 环境变量覆盖
-
-某些配置项可以通过环境变量进行覆盖，这在不同环境部署时特别有用：
-
-```bash
-# 设置环境变量覆盖配置
-export UNILAB_LAB_ID="YOUR_LAB_ID"
-export UNILAB_MQTT_BROKER="mqtt-broker-address"
+如果您不涉及多环境开发，可以在unilabos的安装路径中手动添加local_config.py的文件
 
 # 启动Uni-Lab
 python -m unilabos.app.main --config path/to/your/config.py

docs/user_guide/installation.md

@@ -6,7 +6,7 @@
 
 ```shell
 mamba env create -f unilabos-<YOUR_OS>.yaml
-mamba activate ilab
+mamba activate unilab
 ```
 
 其中 `YOUR_OS` 是您的操作系统，可选值 `win64`, `linux-64`, `osx-64`, `osx-arm64`

recipes/conda_build_config.yaml

@@ -1,3 +1,6 @@
+channel_sources:
+  - robostack,robostack-staging,conda-forge,defaults
+  
 gazebo:
   - '11'
 libpqxx:

recipes/macos_sdk_config.yaml

@@ -0,0 +1,7 @@
+CONDA_BUILD_SYSROOT:
+  - /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
+MACOSX_DEPLOYMENT_TARGET:
+  - "11.0"
+CONDA_SUBDIR:
+  - osx-arm64
+# boa build -m ./recipes/conda_build_config.yaml -m ./recipes/macos_sdk_config.yaml ./recipes/ros-humble-unilabos-msgs

recipes/ros-humble-unilabos-msgs/recipe.yaml

@@ -1,6 +1,6 @@
 package:
   name: ros-humble-unilabos-msgs
-  version: 0.8.0
+  version: 0.9.8
 source:
   path: ../../unilabos_msgs
   folder: ros-humble-unilabos-msgs/src/work
@@ -50,12 +50,12 @@ requirements:
     - robostack-staging::ros-humble-rosidl-default-generators
     - robostack-staging::ros-humble-std-msgs
     - robostack-staging::ros-humble-geometry-msgs
-    - robostack-staging::ros2-distro-mutex=0.6.*
+    - robostack-staging::ros2-distro-mutex=0.5.*
   run:
     - robostack-staging::ros-humble-action-msgs
     - robostack-staging::ros-humble-ros-workspace
     - robostack-staging::ros-humble-rosidl-default-runtime
     - robostack-staging::ros-humble-std-msgs
     - robostack-staging::ros-humble-geometry-msgs
-    - robostack-staging::ros2-distro-mutex=0.6.*
+#    - robostack-staging::ros2-distro-mutex=0.6.*
     - sel(osx and x86_64): __osx >={{ MACOSX_DEPLOYMENT_TARGET|default('10.14') }}

recipes/unilabos/recipe.yaml

@@ -1,6 +1,6 @@
 package:
   name: unilabos
-  version: "0.8.0"
+  version: "0.9.8"
 
 source:
   path: ../..

setup.cfg

@@ -1,4 +1,2 @@
-[develop]
-script_dir=$base/lib/unilabos
 [install]
 install_scripts=$base/lib/unilabos

setup.py

@@ -1,32 +1,23 @@
 from setuptools import setup, find_packages
-from glob import glob
-import os
 
 package_name = 'unilabos'
 
 setup(
     name=package_name,
-    version='0.8.0',
+    version='0.9.8',
     packages=find_packages(),
-    # data_files=[
-    #     ('share/ament_index/resource_index/packages',
-    #         ['resource/' + package_name]),
-    #     ('share/' + package_name, ['package.xml']),
-    #     # (os.path.join('share', package_name, 'launch'), glob('launch/*.launch.py')),
-    #     # (os.path.join('share', package_name, 'urdf'), glob('urdf/*')),
-    #     # (os.path.join('share', package_name, 'meshes'), glob('meshes/*')),
-    #     # (os.path.join('share', package_name, 'config'), glob('config/*'))
-    # ],
+    include_package_data=True,
     install_requires=['setuptools'],
     zip_safe=True,
     maintainer='Junhan Chang',
     maintainer_email='changjh@pku.edu.cn',
-    description='TODO: Package description',
-    license='TODO: License declaration',
+    description='',
+    license='GPL v3',
     tests_require=['pytest'],
     entry_points={
         'console_scripts': [
             "unilab = unilabos.app.main:main",
+            "unilab-register = unilabos.app.register:main"
         ],
     },
 )

test/commands/resource_add.md

@@ -0,0 +1,11 @@
+使用plr_test.json启动，将Well加入Plate中
+
+```bash
+ros2 action send_goal /devices/host_node/create_resource_detailed unilabos_msgs/action/_resource_create_from_outer/ResourceCreateFromOuter "{ resources: [ { 'category': '', 'children': [], 'config': { 'type': 'Well', 'size_x': 6.86, 'size_y': 6.86, 'size_z': 10.67, 'rotation': { 'x': 0, 'y': 0, 'z': 0, 'type': 'Rotation' }, 'category': 'well', 'model': null, 'max_volume': 360, 'material_z_thickness': 0.5, 'compute_volume_from_height': null, 'compute_height_from_volume': null, 'bottom_type': 'flat', 'cross_section_type': 'circle' }, 'data': { 'liquids': [], 'pending_liquids': [], 'liquid_history': [] }, 'id': 'plate_well_11_7', 'name': 'plate_well_11_7', 'pose': { 'orientation': { 'w': 1.0, 'x': 0.0, 'y': 0.0, 'z': 0.0 }, 'position': { 'x': 0.0, 'y': 0.0, 'z': 0.0 } }, 'sample_id': '', 'parent': 'plate', 'type': 'device' } ], device_ids: [ 'PLR_STATION' ], bind_parent_ids: [ 'plate' ], bind_locations: [ { 'x': 0.0, 'y': 0.0, 'z': 0.0 } ], other_calling_params: [ '{}' ] }"
+```
+
+使用mock_all.json启动，重新捕获MockContainerForChiller1
+
+```bash
+ros2 action send_goal /devices/host_node/create_resource unilabos_msgs/action/_resource_create_from_outer_easy/ResourceCreateFromOuterEasy "{ 'res_id': 'MockContainerForChiller1', 'device_id': 'MockChiller1', 'class_name': 'container', 'parent': 'MockChiller1', 'bind_locations': { 'x': 0.0, 'y': 0.0, 'z': 0.0 }, 'liquid_input_slot': [ -1 ], 'liquid_type': [ 'CuCl2' ], 'liquid_volume': [ 100.0 ], 'slot_on_deck': '' }"
+```

test/experiments/HPLC.json

@@ -5,7 +5,7 @@
             "name": "HPLC",
             "parent": null,
             "type": "device",
-            "class": "hplc",
+            "class": "hplc.agilent",
             "position": {
                 "x": 620.6111111111111,
                 "y": 171,
@@ -19,8 +19,8 @@
         },
         {
             "id": "BottlesRack3",
-            "name": "Revvity上样盘3",
-            "parent": "Revvity",
+            "name": "上样盘3",
+            "parent": "HPLC",
             "type": "plate",
             "class": null,
             "position": {

test/experiments/Protocol_Test_Station/add_protocol_test_station.json

@@ -0,0 +1,563 @@
+{
+    "nodes": [
+        {
+            "id": "AddProtocolTestStation",
+            "name": "添加协议测试站",
+            "children": [
+                "transfer_pump_1",
+                "transfer_pump_2", 
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "stirrer_1",
+                "stirrer_2",
+                "flask_DMF",
+                "flask_ethyl_acetate", 
+                "flask_methanol",
+                "flask_acetone",
+                "flask_water",
+                "flask_air",
+                "main_reactor",
+                "secondary_reactor",
+                "waste_workup",
+                "collection_bottle_1",
+                "collection_bottle_2"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["PumpTransferProtocol", "AddProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵1",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 250,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 25.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "转移泵2",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 750,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP2",
+                "max_volume": 25.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "试剂分配阀",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 250,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "反应器分配阀",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 750,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE2",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "stirrer_1",
+            "name": "主反应器搅拌器",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 600,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_STIRRER1",
+                "max_speed": 1500.0,
+                "default_speed": 300.0
+            },
+            "data": {
+                "speed": 0.0,
+                "status": "Stopped"
+            }
+        },
+        {
+            "id": "stirrer_2",
+            "name": "副反应器搅拌器",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 900,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_STIRRER2",
+                "max_speed": 1500.0,
+                "default_speed": 300.0
+            },
+            "data": {
+                "speed": 0.0,
+                "status": "Stopped"
+            }
+        },
+        {
+            "id": "flask_DMF",
+            "name": "DMF试剂瓶",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 50,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "DMF",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethyl_acetate",
+            "name": "乙酸乙酯试剂瓶",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 150,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethyl_acetate",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇试剂瓶",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "methanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_acetone",
+            "name": "丙酮试剂瓶",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 350,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "acetone",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "蒸馏水瓶",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 450,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "water",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 550,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "main_reactor",
+            "name": "主反应器",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "secondary_reactor",
+            "name": "副反应器",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 900,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "废液处理瓶",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_1",
+            "name": "收集瓶1",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_2",
+            "name": "收集瓶2",
+            "children": [],
+            "parent": "AddProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 900,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump1_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_pump2_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_valve2",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "8",
+                "multiway_valve_2": "1"
+            }
+        },
+        {
+            "id": "link_valve1_DMF",
+            "source": "multiway_valve_1",
+            "target": "flask_DMF",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_DMF": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_ethyl_acetate",
+            "source": "multiway_valve_1",
+            "target": "flask_ethyl_acetate",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_ethyl_acetate": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_methanol",
+            "source": "multiway_valve_1",
+            "target": "flask_methanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_methanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_acetone",
+            "source": "multiway_valve_1",
+            "target": "flask_acetone",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_acetone": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_water",
+            "source": "multiway_valve_1",
+            "target": "flask_water",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "5",
+                "flask_water": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "6",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve2_main_reactor",
+            "source": "multiway_valve_2",
+            "target": "main_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "2",
+                "main_reactor": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_secondary_reactor",
+            "source": "multiway_valve_2",
+            "target": "secondary_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "3",
+                "secondary_reactor": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_waste",
+            "source": "multiway_valve_2",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "6",
+                "waste_workup": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_collection1",
+            "source": "multiway_valve_2",
+            "target": "collection_bottle_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "7",
+                "collection_bottle_1": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_collection2",
+            "source": "multiway_valve_2",
+            "target": "collection_bottle_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "8",
+                "collection_bottle_2": "inlet"
+            }
+        },
+        {
+            "id": "link_stirrer1_main_reactor",
+            "source": "stirrer_1",
+            "target": "main_reactor",
+            "type": "mechanical",
+            "port": {
+                "stirrer_1": "stirrer_head",
+                "main_reactor": "stirrer_port"
+            }
+        },
+        {
+            "id": "link_stirrer2_secondary_reactor",
+            "source": "stirrer_2",
+            "target": "secondary_reactor",
+            "type": "mechanical",
+            "port": {
+                "stirrer_2": "stirrer_head",
+                "secondary_reactor": "stirrer_port"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/centrifuge_protocol_test_station.json

@@ -0,0 +1,438 @@
+{
+    "nodes": [
+        {
+            "id": "CentrifugeProtocolTestStation",
+            "name": "离心协议测试站",
+            "children": [
+                "transfer_pump_1",
+                "transfer_pump_2",
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "centrifuge_1",
+                "reaction_mixture",
+                "centrifuge_tube",
+                "collection_bottle_1",
+                "flask_water",
+                "flask_ethanol",
+                "flask_acetone",
+                "flask_air",
+                "waste_workup"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": [
+                    "CentrifugeProtocol",
+                    "PumpTransferProtocol"
+                ]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "主转移泵",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 200,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 25.0,
+                "transfer_rate": 2.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "副转移泵",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 400,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP2",
+                "max_volume": 25.0,
+                "transfer_rate": 2.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "溶剂分配阀",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 200,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "样品分配阀",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 400,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE2",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "centrifuge_1",
+            "name": "离心机",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "device",
+            "class": "virtual_centrifuge",
+            "position": {
+                "x": 600,
+                "y": 350,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_CENTRIFUGE1",
+                "max_speed": 15000.0,
+                "max_temp": 40.0,
+                "min_temp": 4.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "reaction_mixture",
+            "name": "反应混合物",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "cell_suspension",
+                        "liquid_volume": 200.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "centrifuge_tube",
+            "name": "离心管",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 15.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_1",
+            "name": "上清液收集瓶",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "蒸馏水瓶",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 200,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "water",
+                        "liquid_volume": 900.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethanol",
+            "name": "乙醇清洗瓶",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 300,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_acetone",
+            "name": "丙酮清洗瓶",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "acetone",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "CentrifugeProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump1_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_pump2_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve1_water",
+            "source": "multiway_valve_1",
+            "target": "flask_water",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_water": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_ethanol",
+            "source": "multiway_valve_1",
+            "target": "flask_ethanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_ethanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_acetone",
+            "source": "multiway_valve_1",
+            "target": "flask_acetone",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_acetone": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_valve2",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "5",
+                "multiway_valve_2": "1"
+            }
+        },
+        {
+            "id": "link_valve2_reaction_mixture",
+            "source": "multiway_valve_2",
+            "target": "reaction_mixture",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "2",
+                "reaction_mixture": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_centrifuge_tube",
+            "source": "multiway_valve_2",
+            "target": "centrifuge_tube",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "3",
+                "centrifuge_tube": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_collection",
+            "source": "multiway_valve_2",
+            "target": "collection_bottle_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "4",
+                "collection_bottle_1": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_waste",
+            "source": "multiway_valve_2",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "5",
+                "waste_workup": "inlet"
+            }
+        },
+        {
+            "id": "link_centrifuge1_centrifuge_tube",
+            "source": "centrifuge_1",
+            "target": "centrifuge_tube",
+            "type": "transport",
+            "port": {
+                "centrifuge_1": "centrifuge",
+                "centrifuge_tube": "centrifuge_port"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/clean_vessel_protocol_test_station.json

@@ -0,0 +1,446 @@
+{
+    "nodes": [
+        {
+            "id": "CleanVesselProtocolTestStation",
+            "name": "容器清洗协议测试站",
+            "children": [
+                "transfer_pump_1",
+                "transfer_pump_2",
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "heatchill_1",
+                "flask_water",
+                "flask_acetone",
+                "flask_ethanol",
+                "flask_air",
+                "main_reactor",
+                "secondary_reactor",
+                "waste_workup"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": [
+                    "CleanVesselProtocol",
+                    "PumpTransferProtocol",
+                    "HeatChillProtocol",
+                    "HeatChillStartProtocol",
+                    "HeatChillStopProtocol"
+                ]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "主清洗泵",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 250,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 25.0,
+                "transfer_rate": 2.5
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "副清洗泵",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 450,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP2",
+                "max_volume": 25.0,
+                "transfer_rate": 2.5
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "溶剂分配阀",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 250,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "容器分配阀",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 450,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE2",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "heatchill_1",
+            "name": "加热清洗器",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 600,
+                "y": 350,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_HEATCHILL1",
+                "max_temp": 100.0,
+                "min_temp": 10.0,
+                "max_stir_speed": 500.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "蒸馏水瓶",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 50,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "water",
+                        "liquid_volume": 900.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_acetone",
+            "name": "丙酮清洗瓶",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 150,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "acetone",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethanol",
+            "name": "乙醇清洗瓶",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 250,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 350,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "main_reactor",
+            "name": "主反应器",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 600,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "residue",
+                        "liquid_volume": 50.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "secondary_reactor",
+            "name": "副反应器",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 800,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "organic_residue",
+                        "liquid_volume": 30.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "清洗废液瓶",
+            "children": [],
+            "parent": "CleanVesselProtocolTestStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 700,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 3000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+        "links": [
+        {
+            "id": "link_pump1_to_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_pump2_to_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_to_water",
+            "source": "multiway_valve_1",
+            "target": "flask_water",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_water": "top"
+            }
+        },
+        {
+            "id": "link_valve1_to_acetone",
+            "source": "multiway_valve_1",
+            "target": "flask_acetone",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_acetone": "top"
+            }
+        },
+        {
+            "id": "link_valve1_to_ethanol",
+            "source": "multiway_valve_1",
+            "target": "flask_ethanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_ethanol": "top"
+            }
+        },
+        {
+            "id": "link_valve1_to_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "6",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve1_to_valve2_for_cleaning",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "multiway_valve_2": "8"
+            }
+        },
+        {
+            "id": "link_valve2_to_main_reactor_in",
+            "source": "multiway_valve_2",
+            "target": "main_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "2",
+                "main_reactor": "top"
+            }
+        },
+        {
+            "id": "link_valve2_to_secondary_reactor_in",
+            "source": "multiway_valve_2",
+            "target": "secondary_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "3",
+                "secondary_reactor": "top"
+            }
+        },
+        {
+            "id": "link_main_reactor_out_to_valve2",
+            "source": "main_reactor",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "main_reactor": "bottom",
+                "multiway_valve_2": "6"
+            }
+        },
+        {
+            "id": "link_secondary_reactor_out_to_valve2",
+            "source": "secondary_reactor",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "secondary_reactor": "bottom",
+                "multiway_valve_2": "7"
+            }
+        },
+        {
+            "id": "link_valve2_to_waste",
+            "source": "multiway_valve_2",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "4",
+                "waste_workup": "top"
+            }
+        },
+        {
+            "id": "link_heatchill1_to_main_reactor",
+            "source": "heatchill_1",
+            "target": "main_reactor",
+            "type": "mechanical",
+            "port": {
+                "heatchill_1": "heatchill",
+                "main_reactor": "bind"
+            }
+        },
+        {
+            "id": "link_heatchill1_to_secondary_reactor",
+            "source": "heatchill_1",
+            "target": "secondary_reactor",
+            "type": "mechanical",
+            "port": {
+                "heatchill_1": "heatchill",
+                "secondary_reactor": "bind"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/dual_valve_pump_test_station.json

@@ -0,0 +1,367 @@
+{
+    "nodes": [
+        {
+            "id": "DualValvePumpStation",
+            "name": "双阀门泵站",
+            "children": [
+                "transfer_pump_1",
+                "transfer_pump_2", 
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "flask_DMF",
+                "flask_ethyl_acetate", 
+                "flask_methanol",
+                "flask_air",
+                "main_reactor",
+                "waste_workup",
+                "collection_bottle_1"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["PumpTransferProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵1",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 300,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 25.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "转移泵2",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 700,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP2",
+                "max_volume": 25.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "第一个八通阀",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 300,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "第二个八通阀",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 700,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE2",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "flask_DMF",
+            "name": "DMF试剂瓶",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "DMF",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethyl_acetate",
+            "name": "乙酸乙酯试剂瓶",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 200,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethyl_acetate",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇试剂瓶",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 300,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "methanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "main_reactor",
+            "name": "主反应器",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "废液处理瓶",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_1",
+            "name": "收集瓶1",
+            "children": [],
+            "parent": "DualValvePumpStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump1_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_pump2_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_valve2",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "8",
+                "multiway_valve_2": "1"
+            }
+        },
+        {
+            "id": "link_valve1_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve1_DMF",
+            "source": "multiway_valve_1",
+            "target": "flask_DMF",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_DMF": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_ethyl_acetate",
+            "source": "multiway_valve_1",
+            "target": "flask_ethyl_acetate",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_ethyl_acetate": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_methanol",
+            "source": "multiway_valve_1",
+            "target": "flask_methanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_methanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve2_reactor",
+            "source": "multiway_valve_2",
+            "target": "main_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "5",
+                "main_reactor": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_waste",
+            "source": "multiway_valve_2",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "6",
+                "waste_workup": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_collection",
+            "source": "multiway_valve_2",
+            "target": "collection_bottle_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "7",
+                "collection_bottle_1": "inlet"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/evacuateandrefill_test_station.json

@@ -0,0 +1,557 @@
+{
+    "nodes": [
+        {
+            "id": "EvacuateRefillTestStation",
+            "name": "抽真空充气测试站",
+            "children": [
+                "transfer_pump_1",
+                "transfer_pump_2", 
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "flask_DMF",
+                "flask_ethyl_acetate", 
+                "flask_methanol",
+                "flask_air",
+                "vacuum_pump_1",
+                "gas_source_nitrogen",
+                "gas_source_air",
+                "solenoid_valve_vacuum",
+                "solenoid_valve_gas",
+                "main_reactor",
+                "stirrer_1",
+                "waste_workup",
+                "collection_bottle_1"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["PumpTransferProtocol", "EvacuateAndRefillProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵1",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 300,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 25.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "转移泵2",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 700,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP2",
+                "max_volume": 25.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "第一个八通阀",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 300,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "第二个八通阀",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 700,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE2",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "vacuum_pump_1",
+            "name": "真空泵1",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_vacuum_pump",
+            "position": {
+                "x": 150,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VACUUM1",
+                "max_pressure": -0.9
+            },
+            "data": {
+                "status": "OFF",
+                "pressure": 0.0
+            }
+        },
+        {
+            "id": "gas_source_nitrogen",
+            "name": "氮气源",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_gas_source",
+            "position": {
+                "x": 850,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_GAS_N2",
+                "gas_type": "nitrogen",
+                "max_pressure": 5.0
+            },
+            "data": {
+                "status": "OFF",
+                "flow_rate": 0.0
+            }
+        },
+        {
+            "id": "gas_source_air",
+            "name": "空气源",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_gas_source",
+            "position": {
+                "x": 950,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_GAS_AIR",
+                "gas_type": "air",
+                "max_pressure": 3.0
+            },
+            "data": {
+                "status": "OFF",
+                "flow_rate": 0.0
+            }
+        },
+        {
+            "id": "solenoid_valve_vacuum",
+            "name": "真空电磁阀",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_solenoid_valve",
+            "position": {
+                "x": 225,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_SOLENOID_VACUUM"
+            },
+            "data": {
+                "valve_position": "CLOSED"
+            }
+        },
+        {
+            "id": "solenoid_valve_gas",
+            "name": "气源电磁阀",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_solenoid_valve",
+            "position": {
+                "x": 775,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_SOLENOID_GAS"
+            },
+            "data": {
+                "valve_position": "CLOSED"
+            }
+        },
+        {
+            "id": "flask_DMF",
+            "name": "DMF试剂瓶",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "DMF",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethyl_acetate",
+            "name": "乙酸乙酯试剂瓶",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 200,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethyl_acetate",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇试剂瓶",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 300,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "methanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "main_reactor",
+            "name": "主反应器",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "stirrer_1",
+            "name": "搅拌器1",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 600,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_STIRRER1",
+                "max_speed": 1500.0
+            },
+            "data": {
+                "speed": 0.0,
+                "status": "OFF"
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "废液处理瓶",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_1",
+            "name": "收集瓶1",
+            "children": [],
+            "parent": "EvacuateRefillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump1_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_pump2_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_valve2",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "8",
+                "multiway_valve_2": "1"
+            }
+        },
+        {
+            "id": "link_vacuum_solenoid",
+            "source": "vacuum_pump_1",
+            "target": "solenoid_valve_vacuum",
+            "type": "fluid",
+            "port": {
+                "vacuum_pump_1": "outlet",
+                "solenoid_valve_vacuum": "inlet"
+            }
+        },
+        {
+            "id": "link_solenoid_vacuum_valve1",
+            "source": "solenoid_valve_vacuum",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "solenoid_valve_vacuum": "outlet",
+                "multiway_valve_1": "7"
+            }
+        },
+        {
+            "id": "link_gas_solenoid",
+            "source": "gas_source_nitrogen",
+            "target": "solenoid_valve_gas",
+            "type": "fluid",
+            "port": {
+                "gas_source_nitrogen": "outlet",
+                "solenoid_valve_gas": "inlet"
+            }
+        },
+        {
+            "id": "link_solenoid_gas_valve2",
+            "source": "solenoid_valve_gas",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "solenoid_valve_gas": "outlet",
+                "multiway_valve_2": "8"
+            }
+        },
+        {
+            "id": "link_air_source_valve2",
+            "source": "gas_source_air",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "gas_source_air": "outlet",
+                "multiway_valve_2": "2"
+            }
+        },
+        {
+            "id": "link_valve1_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve1_DMF",
+            "source": "multiway_valve_1",
+            "target": "flask_DMF",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_DMF": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_ethyl_acetate",
+            "source": "multiway_valve_1",
+            "target": "flask_ethyl_acetate",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_ethyl_acetate": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_methanol",
+            "source": "multiway_valve_1",
+            "target": "flask_methanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_methanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve2_reactor",
+            "source": "multiway_valve_2",
+            "target": "main_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "5",
+                "main_reactor": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_waste",
+            "source": "multiway_valve_2",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "6",
+                "waste_workup": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_collection",
+            "source": "multiway_valve_2",
+            "target": "collection_bottle_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "7",
+                "collection_bottle_1": "inlet"
+            }
+        },
+        {
+            "id": "link_stirrer_reactor",
+            "source": "stirrer_1",
+            "target": "main_reactor",
+            "type": "mechanical",
+            "port": {
+                "stirrer_1": "stirrer",
+                "main_reactor": "stirrer"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/evaporate_protocol_test_station.json

@@ -0,0 +1,503 @@
+{
+    "nodes": [
+        {
+            "id": "EvaporateProtocolTestStation",
+            "name": "蒸发协议测试站",
+            "children": [
+                "transfer_pump_1",
+                "transfer_pump_2", 
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "rotavap_1",
+                "heatchill_1",
+                "reaction_mixture",
+                "rotavap_flask",
+                "rotavap_condenser",
+                "flask_distillate",
+                "flask_ethanol",
+                "flask_acetone",
+                "flask_water",
+                "flask_air",
+                "waste_workup"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": [
+                    "EvaporateProtocol",
+                    "PumpTransferProtocol",
+                    "HeatChillProtocol",
+                    "HeatChillStartProtocol",
+                    "HeatChillStopProtocol"
+                ]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "主转移泵",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 200,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 25.0,
+                "transfer_rate": 2.5
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "副转移泵",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 400,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP2",
+                "max_volume": 25.0,
+                "transfer_rate": 2.5
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "溶剂分配阀",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 200,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "容器分配阀",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 400,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE2",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "rotavap_1",
+            "name": "旋转蒸发仪",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "device",
+            "class": "virtual_rotavap",
+            "position": {
+                "x": 700,
+                "y": 350,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_ROTAVAP1",
+                "max_temp": 180.0,
+                "max_rotation_speed": 280.0
+            },
+            "data": {
+                "status": "Ready"
+            }
+        },
+        {
+            "id": "heatchill_1",
+            "name": "预加热器",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 100,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_HEATCHILL1",
+                "max_temp": 100.0,
+                "min_temp": 10.0,
+                "max_stir_speed": 500.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "reaction_mixture",
+            "name": "反应混合物",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "reaction_mixture",
+                        "liquid_volume": 600.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "rotavap_flask",
+            "name": "旋蒸样品瓶",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "rotavap_condenser",
+            "name": "旋蒸冷凝器",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 350,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_distillate",
+            "name": "溶剂回收瓶",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_ethanol",
+            "name": "乙醇清洗瓶",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 50,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_acetone",
+            "name": "丙酮清洗瓶",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 150,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "acetone",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "蒸馏水瓶",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "water",
+                        "liquid_volume": 900.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 350,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "EvaporateProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 3000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump1_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_pump2_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve1_ethanol",
+            "source": "multiway_valve_1",
+            "target": "flask_ethanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_ethanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_acetone",
+            "source": "multiway_valve_1",
+            "target": "flask_acetone",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_acetone": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_water",
+            "source": "multiway_valve_1",
+            "target": "flask_water",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_water": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_valve2",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "5",
+                "multiway_valve_2": "1"
+            }
+        },
+        {
+            "id": "link_valve2_reaction_mixture",
+            "source": "multiway_valve_2",
+            "target": "reaction_mixture",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "2",
+                "reaction_mixture": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_rotavap_flask",
+            "source": "multiway_valve_2",
+            "target": "rotavap_flask",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "3",
+                "rotavap_flask": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_rotavap_condenser",
+            "source": "multiway_valve_2",
+            "target": "rotavap_condenser",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "4",
+                "rotavap_condenser": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_distillate",
+            "source": "multiway_valve_2",
+            "target": "flask_distillate",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "5",
+                "flask_distillate": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_waste",
+            "source": "multiway_valve_2",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "6",
+                "waste_workup": "inlet"
+            }
+        },
+        {
+            "id": "link_rotavap1_rotavap_flask",
+            "source": "rotavap_1",
+            "target": "rotavap_flask",
+            "type": "fluid",
+            "port": {
+                "rotavap_1": "rotavap-sample",
+                "rotavap_flask": "rotavap_port"
+            }
+        },
+        {
+            "id": "link_heatchill1_reaction_mixture",
+            "source": "heatchill_1",
+            "target": "reaction_mixture",
+            "type": "mechanical",
+            "port": {
+                "heatchill_1": "heatchill",
+                "reaction_mixture": "heating_jacket"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/filter_protocol_test_station.json

@@ -0,0 +1,534 @@
+{
+    "nodes": [
+        {
+            "id": "FilterProtocolTestStation",
+            "name": "过滤协议测试站",
+            "children": [
+                "transfer_pump_1",
+                "transfer_pump_2",
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "filter_1",
+                "heatchill_1",
+                "reaction_mixture",
+                "filter_vessel",
+                "filtrate_vessel",
+                "collection_bottle_1",
+                "collection_bottle_2",
+                "flask_water",
+                "flask_ethanol",
+                "flask_acetone",
+                "flask_air",
+                "waste_workup"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": [
+                    "FilterProtocol",
+                    "PumpTransferProtocol",
+                    "HeatChillProtocol",
+                    "HeatChillStartProtocol",
+                    "HeatChillStopProtocol"
+                ]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "主转移泵",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 200,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 25.0,
+                "transfer_rate": 2.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "副转移泵",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 400,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP2",
+                "max_volume": 25.0,
+                "transfer_rate": 2.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "溶剂分配阀",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 200,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "样品分配阀",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 400,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE2",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "filter_1",
+            "name": "过滤器",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "device",
+            "class": "virtual_filter",
+            "position": {
+                "x": 600,
+                "y": 350,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_FILTER1",
+                "max_temp": 100.0,
+                "max_stir_speed": 1000.0,
+                "max_volume": 500.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "heatchill_1",
+            "name": "加热搅拌器",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 600,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_HEATCHILL1",
+                "max_temp": 100.0,
+                "min_temp": 4.0,
+                "max_stir_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "reaction_mixture",
+            "name": "反应混合物",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "cell_suspension",
+                        "liquid_volume": 200.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "filter_vessel",
+            "name": "过滤器容器",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "filtrate_vessel",
+            "name": "滤液收集容器",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_1",
+            "name": "收集瓶1",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_2",
+            "name": "收集瓶2",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 900,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "蒸馏水瓶",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 200,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "water",
+                        "liquid_volume": 900.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethanol",
+            "name": "乙醇清洗瓶",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 300,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_acetone",
+            "name": "丙酮清洗瓶",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "acetone",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "FilterProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump1_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_pump2_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve1_water",
+            "source": "multiway_valve_1",
+            "target": "flask_water",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_water": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_ethanol",
+            "source": "multiway_valve_1",
+            "target": "flask_ethanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_ethanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_acetone",
+            "source": "multiway_valve_1",
+            "target": "flask_acetone",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_acetone": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_valve2",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "5",
+                "multiway_valve_2": "1"
+            }
+        },
+        {
+            "id": "link_valve2_reaction_mixture",
+            "source": "multiway_valve_2",
+            "target": "reaction_mixture",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "2",
+                "reaction_mixture": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_filter_vessel",
+            "source": "multiway_valve_2",
+            "target": "filter_vessel",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "3",
+                "filter_vessel": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_filtrate_vessel",
+            "source": "multiway_valve_2",
+            "target": "filtrate_vessel",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "4",
+                "filtrate_vessel": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_collection1",
+            "source": "multiway_valve_2",
+            "target": "collection_bottle_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "5",
+                "collection_bottle_1": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_collection2",
+            "source": "multiway_valve_2",
+            "target": "collection_bottle_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "6",
+                "collection_bottle_2": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_waste",
+            "source": "multiway_valve_2",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "7",
+                "waste_workup": "inlet"
+            }
+        },
+        {
+            "id": "link_filter1_filter_vessel",
+            "source": "filter_1",
+            "target": "filter_vessel",
+            "type": "transport",
+            "port": {
+                "filter_1": "filter",
+                "filter_vessel": "filter_port"
+            }
+        },
+        {
+            "id": "link_heatchill1_filter_vessel",
+            "source": "heatchill_1",
+            "target": "filter_vessel",
+            "type": "mechanical",
+            "port": {
+                "heatchill_1": "heatchill",
+                "filter_vessel": "heating_jacket"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/heatchill_protocol_test_station.json

@@ -0,0 +1,671 @@
+{
+    "nodes": [
+        {
+            "id": "HeatChillProtocolTestStation",
+            "name": "加热冷却协议测试站",
+            "children": [
+                "transfer_pump_1",
+                "transfer_pump_2", 
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "stirrer_1",
+                "stirrer_2",
+                "heatchill_1",
+                "heatchill_2",
+                "flask_DMF",
+                "flask_ethyl_acetate", 
+                "flask_methanol",
+                "flask_acetone",
+                "flask_water",
+                "flask_ethanol",
+                "flask_air",
+                "main_reactor",
+                "secondary_reactor",
+                "waste_workup",
+                "collection_bottle_1",
+                "collection_bottle_2"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": [
+                    "PumpTransferProtocol", 
+                    "AddProtocol", 
+                    "HeatChillProtocol", 
+                    "HeatChillStartProtocol", 
+                    "HeatChillStopProtocol",
+                    "DissolveProtocol"
+                ]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵1",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 250,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 25.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "转移泵2",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 750,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP2",
+                "max_volume": 25.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "试剂分配阀",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 250,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "反应器分配阀",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 750,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE2",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "stirrer_1",
+            "name": "主反应器搅拌器",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 600,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_STIRRER1",
+                "max_speed": 1500.0,
+                "default_speed": 300.0
+            },
+            "data": {
+                "speed": 0.0,
+                "status": "Stopped"
+            }
+        },
+        {
+            "id": "stirrer_2",
+            "name": "副反应器搅拌器",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 900,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_STIRRER2",
+                "max_speed": 1500.0,
+                "default_speed": 300.0
+            },
+            "data": {
+                "speed": 0.0,
+                "status": "Stopped"
+            }
+        },
+        {
+            "id": "heatchill_1",
+            "name": "主反应器加热冷却器",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 550,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_HEATCHILL1",
+                "max_temp": 200.0,
+                "min_temp": -80.0,
+                "max_stir_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "heatchill_2",
+            "name": "副反应器加热冷却器",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 850,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_HEATCHILL2",
+                "max_temp": 200.0,
+                "min_temp": -80.0,
+                "max_stir_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "flask_DMF",
+            "name": "DMF试剂瓶",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 50,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "DMF",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethyl_acetate",
+            "name": "乙酸乙酯试剂瓶",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 150,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethyl_acetate",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇试剂瓶",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "methanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+                {
+            "id": "flask_ethanol",
+            "name": "乙醇试剂瓶",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 650,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_acetone",
+            "name": "丙酮试剂瓶",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 350,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "acetone",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "蒸馏水瓶",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 450,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "water",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 550,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "main_reactor",
+            "name": "主反应器",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "secondary_reactor",
+            "name": "副反应器",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 900,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "废液处理瓶",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_1",
+            "name": "收集瓶1",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_2",
+            "name": "收集瓶2",
+            "children": [],
+            "parent": "HeatChillProtocolTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 900,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump1_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_pump2_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_valve2",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "8",
+                "multiway_valve_2": "1"
+            }
+        },
+        {
+            "id": "link_valve1_DMF",
+            "source": "multiway_valve_1",
+            "target": "flask_DMF",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_DMF": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_ethyl_acetate",
+            "source": "multiway_valve_1",
+            "target": "flask_ethyl_acetate",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_ethyl_acetate": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_methanol",
+            "source": "multiway_valve_1",
+            "target": "flask_methanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_methanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_acetone",
+            "source": "multiway_valve_1",
+            "target": "flask_acetone",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_acetone": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_water",
+            "source": "multiway_valve_1",
+            "target": "flask_water",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "5",
+                "flask_water": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "6",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve2_main_reactor",
+            "source": "multiway_valve_2",
+            "target": "main_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "2",
+                "main_reactor": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_secondary_reactor",
+            "source": "multiway_valve_2",
+            "target": "secondary_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "3",
+                "secondary_reactor": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_waste",
+            "source": "multiway_valve_2",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "6",
+                "waste_workup": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_collection1",
+            "source": "multiway_valve_2",
+            "target": "collection_bottle_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "7",
+                "collection_bottle_1": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_collection2",
+            "source": "multiway_valve_2",
+            "target": "collection_bottle_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "8",
+                "collection_bottle_2": "inlet"
+            }
+        },
+        {
+            "id": "link_stirrer1_main_reactor",
+            "source": "stirrer_1",
+            "target": "main_reactor",
+            "type": "mechanical",
+            "port": {
+                "stirrer_1": "stirrer_head",
+                "main_reactor": "stirrer_port"
+            }
+        },
+        {
+            "id": "link_stirrer2_secondary_reactor",
+            "source": "stirrer_2",
+            "target": "secondary_reactor",
+            "type": "mechanical",
+            "port": {
+                "stirrer_2": "stirrer_head",
+                "secondary_reactor": "stirrer_port"
+            }
+        },
+        {
+            "id": "link_heatchill1_main_reactor",
+            "source": "heatchill_1",
+            "target": "main_reactor",
+            "type": "thermal",
+            "port": {
+                "heatchill_1": "heating_surface",
+                "main_reactor": "heating_jacket"
+            }
+        },
+        {
+            "id": "link_heatchill2_secondary_reactor",
+            "source": "heatchill_2",
+            "target": "secondary_reactor",
+            "type": "thermal",
+            "port": {
+                "heatchill_2": "heating_surface",
+                "secondary_reactor": "heating_jacket"
+            }
+        },
+        {
+            "id": "link_valve1_ethanol",
+            "source": "multiway_valve_1",
+            "target": "flask_ethanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "7",
+                "flask_ethanol": "outlet"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/pumptransfer_filterthrough_test_station.json

@@ -0,0 +1,778 @@
+{
+    "nodes": [
+        {
+            "id": "PumpTransferFilterThroughTestStation",
+            "name": "泵转移+过滤介质测试站",
+            "children": [
+                "transfer_pump_1",
+                "transfer_pump_2",
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "reaction_mixture",
+                "crude_product",
+                "filter_celite",
+                "column_silica_gel",
+                "filter_C18",
+                "pure_product",
+                "collection_bottle_1",
+                "collection_bottle_2",
+                "collection_bottle_3",
+                "intermediate_vessel_1",
+                "intermediate_vessel_2",
+                "flask_water",
+                "flask_ethanol",
+                "flask_methanol",
+                "flask_ethyl_acetate",
+                "flask_acetone",
+                "flask_hexane",
+                "flask_air",
+                "waste_workup"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": [
+                    "PumpTransferProtocol",
+                    "FilterThroughProtocol"
+                ]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "主转移泵",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 200,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 25.0,
+                "transfer_rate": 2.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "副转移泵",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 400,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP2",
+                "max_volume": 25.0,
+                "transfer_rate": 2.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "溶剂分配阀",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 200,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "样品分配阀",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 400,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE2",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "reaction_mixture",
+            "name": "反应混合物",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "organic_reaction_mixture",
+                        "liquid_volume": 250.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "crude_product",
+            "name": "粗产品",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 200,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "crude_organic_compound",
+                        "liquid_volume": 150.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "filter_celite",
+            "name": "硅藻土过滤器",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 300.0,
+                "filter_type": "celite_pad"
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "column_silica_gel",
+            "name": "硅胶柱",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 200.0,
+                "filter_type": "silica_gel_column"
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "filter_C18",
+            "name": "C18固相萃取柱",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 100.0,
+                "filter_type": "C18_cartridge"
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "pure_product",
+            "name": "纯产品",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 900,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_1",
+            "name": "收集瓶1",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_2",
+            "name": "收集瓶2",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_3",
+            "name": "收集瓶3",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 550,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "intermediate_vessel_1",
+            "name": "中间容器1",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 300,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "intermediate_vessel_2",
+            "name": "中间容器2",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "蒸馏水瓶",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "water",
+                        "liquid_volume": 900.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethanol",
+            "name": "乙醇瓶",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 200,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇瓶",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 300,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "methanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethyl_acetate",
+            "name": "乙酸乙酯瓶",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethyl_acetate",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_acetone",
+            "name": "丙酮瓶",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 500,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "acetone",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_hexane",
+            "name": "正己烷瓶",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "hexane",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "PumpTransferFilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 600,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump1_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_pump2_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve1_water",
+            "source": "multiway_valve_1",
+            "target": "flask_water",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_water": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_ethanol",
+            "source": "multiway_valve_1",
+            "target": "flask_ethanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_ethanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_methanol",
+            "source": "multiway_valve_1",
+            "target": "flask_methanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_methanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_ethyl_acetate",
+            "source": "multiway_valve_1",
+            "target": "flask_ethyl_acetate",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "5",
+                "flask_ethyl_acetate": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_acetone",
+            "source": "multiway_valve_1",
+            "target": "flask_acetone",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "6",
+                "flask_acetone": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_hexane",
+            "source": "multiway_valve_1",
+            "target": "flask_hexane",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "7",
+                "flask_hexane": "outlet"
+            }
+        },
+        {
+            "id": "link_valve1_valve2",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "8",
+                "multiway_valve_2": "1"
+            }
+        },
+        {
+            "id": "link_valve2_reaction_mixture",
+            "source": "multiway_valve_2",
+            "target": "reaction_mixture",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "2",
+                "reaction_mixture": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_crude_product",
+            "source": "multiway_valve_2",
+            "target": "crude_product",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "3",
+                "crude_product": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_intermediate1",
+            "source": "multiway_valve_2",
+            "target": "intermediate_vessel_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "4",
+                "intermediate_vessel_1": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_intermediate2",
+            "source": "multiway_valve_2",
+            "target": "intermediate_vessel_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "5",
+                "intermediate_vessel_2": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_celite",
+            "source": "multiway_valve_2",
+            "target": "filter_celite",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "6",
+                "filter_celite": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_silica_gel",
+            "source": "multiway_valve_2",
+            "target": "column_silica_gel",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "7",
+                "column_silica_gel": "inlet"
+            }
+        },
+        {
+            "id": "link_valve2_C18",
+            "source": "multiway_valve_2",
+            "target": "filter_C18",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "8",
+                "filter_C18": "inlet"
+            }
+        },
+        {
+            "id": "link_celite_collection1",
+            "source": "filter_celite",
+            "target": "collection_bottle_1",
+            "type": "fluid",
+            "port": {
+                "filter_celite": "outlet",
+                "collection_bottle_1": "inlet"
+            }
+        },
+        {
+            "id": "link_silica_gel_collection2",
+            "source": "column_silica_gel",
+            "target": "collection_bottle_2",
+            "type": "fluid",
+            "port": {
+                "column_silica_gel": "outlet",
+                "collection_bottle_2": "inlet"
+            }
+        },
+        {
+            "id": "link_C18_collection3",
+            "source": "filter_C18",
+            "target": "collection_bottle_3",
+            "type": "fluid",
+            "port": {
+                "filter_C18": "outlet",
+                "collection_bottle_3": "inlet"
+            }
+        },
+        {
+            "id": "link_collection1_pure_product",
+            "source": "collection_bottle_1",
+            "target": "pure_product",
+            "type": "fluid",
+            "port": {
+                "collection_bottle_1": "outlet",
+                "pure_product": "inlet"
+            }
+        },
+        {
+            "id": "link_collection2_pure_product",
+            "source": "collection_bottle_2",
+            "target": "pure_product",
+            "type": "fluid",
+            "port": {
+                "collection_bottle_2": "outlet",
+                "pure_product": "inlet"
+            }
+        },
+        {
+            "id": "link_collection3_pure_product",
+            "source": "collection_bottle_3",
+            "target": "pure_product",
+            "type": "fluid",
+            "port": {
+                "collection_bottle_3": "outlet",
+                "pure_product": "inlet"
+            }
+        },
+        {
+            "id": "link_waste_connection",
+            "source": "pure_product",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "pure_product": "waste_outlet",
+                "waste_workup": "inlet"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/pumptransfer_test_station.json

@@ -0,0 +1,304 @@
+{
+    "nodes": [
+        {
+            "id": "SimpleProtocolStation",
+            "name": "简单协议工作站",
+            "children": [
+                "transfer_pump_1",
+                "multiway_valve_1",
+                "flask_DMF",
+                "flask_ethyl_acetate", 
+                "flask_methanol",
+                "main_reactor",
+                "waste_workup",
+                "collection_bottle_1",
+                "flask_air"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["PumpTransferProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵1",
+            "children": [],
+            "parent": "SimpleProtocolStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 500,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 25.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "position": 0.0,
+                "status": "Idle",
+                "valve_position": "0"
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "八通阀1",
+            "children": [],
+            "parent": "SimpleProtocolStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 500,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "flask_DMF",
+            "name": "DMF试剂瓶",
+            "children": [],
+            "parent": "SimpleProtocolStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 200,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "DMF",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethyl_acetate",
+            "name": "乙酸乙酯试剂瓶",
+            "children": [],
+            "parent": "SimpleProtocolStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 300,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "ethyl_acetate",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇试剂瓶",
+            "children": [],
+            "parent": "SimpleProtocolStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "methanol",
+                        "liquid_volume": 800.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "main_reactor",
+            "name": "主反应器",
+            "children": [],
+            "parent": "SimpleProtocolStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_workup",
+            "name": "废液处理瓶",
+            "children": [],
+            "parent": "SimpleProtocolStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_bottle_1",
+            "name": "收集瓶1",
+            "children": [],
+            "parent": "SimpleProtocolStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "SimpleProtocolStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump_valve",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump", 
+                "multiway_valve_1": "transferpump"  
+            }
+        },
+        {
+            "id": "link_valve_air",
+            "source": "multiway_valve_1",
+            "target": "flask_air",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_air": "top"
+            }
+        },
+        {
+            "id": "link_valve_DMF",
+            "source": "multiway_valve_1",
+            "target": "flask_DMF",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_DMF": "outlet"
+            }
+        },
+        {
+            "id": "link_valve_ethyl_acetate",
+            "source": "multiway_valve_1",
+            "target": "flask_ethyl_acetate",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_ethyl_acetate": "outlet"
+            }
+        },
+        {
+            "id": "link_valve_methanol",
+            "source": "multiway_valve_1",
+            "target": "flask_methanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_methanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve_reactor",
+            "source": "multiway_valve_1",
+            "target": "main_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "5",
+                "main_reactor": "inlet"
+            }
+        },
+        {
+            "id": "link_valve_waste",
+            "source": "multiway_valve_1",
+            "target": "waste_workup",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "6",
+                "waste_workup": "inlet"
+            }
+        },
+        {
+            "id": "link_valve_collection",
+            "source": "multiway_valve_1",
+            "target": "collection_bottle_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "7",
+                "collection_bottle_1": "inlet"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/run_column_protocol_test_station.json

@@ -0,0 +1,432 @@
+{
+    "nodes": [
+        {
+            "id": "RunColumnTestStation",
+            "name": "柱层析测试工作站",
+            "children": [
+                "transfer_pump_1",
+                "multiway_valve_1",
+                "column_1",
+                "flask_sample",
+                "flask_hexane",
+                "flask_ethyl_acetate",
+                "flask_methanol",
+                "column_vessel",
+                "collection_flask_1",
+                "collection_flask_2",
+                "collection_flask_3",
+                "waste_flask",
+                "main_reactor"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["RunColumnProtocol", "PumpTransferProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 300,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_PUMP1",
+                "max_volume": 50.0,
+                "transfer_rate": 10.0
+            },
+            "data": {
+                "status": "Idle",
+                "position": 0.0
+            }
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "八通阀门",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 300,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_VALVE1",
+                "positions": 8
+            },
+            "data": {
+                "current_position": 1
+            }
+        },
+        {
+            "id": "column_1",
+            "name": "柱层析设备",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "device",
+            "class": "virtual_column",
+            "position": {
+                "x": 600,
+                "y": 350,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_COLUMN1",
+                "max_flow_rate": 5.0,
+                "column_length": 30.0,
+                "column_diameter": 2.5
+            },
+            "data": {
+                "status": "Idle",
+                "column_state": "Ready"
+            }
+        },
+        {
+            "id": "flask_sample",
+            "name": "样品瓶",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "crude_mixture",
+                        "volume": 200.0,
+                        "concentration": 70.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_hexane",
+            "name": "正己烷洗脱剂",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 200,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "hexane",
+                        "volume": 1500.0,
+                        "concentration": 99.8
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethyl_acetate",
+            "name": "乙酸乙酯洗脱剂",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 300,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "ethyl_acetate",
+                        "volume": 1500.0,
+                        "concentration": 99.5
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇洗脱剂",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "methanol",
+                        "volume": 800.0,
+                        "concentration": 99.9
+                    }
+                ]
+            }
+        },
+        {
+            "id": "column_vessel",
+            "name": "柱容器",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 300.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_flask_1",
+            "name": "收集瓶1",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_flask_2",
+            "name": "收集瓶2",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 800,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_flask_3",
+            "name": "收集瓶3",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 900,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_flask",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 1000,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "main_reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 600,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "reaction_mixture",
+                        "volume": 300.0,
+                        "concentration": 85.0
+                    }
+                ]
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump_valve",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve_sample",
+            "source": "multiway_valve_1",
+            "target": "flask_sample",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "flask_sample": "outlet"
+            }
+        },
+        {
+            "id": "link_valve_hexane",
+            "source": "multiway_valve_1",
+            "target": "flask_hexane",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "flask_hexane": "outlet"
+            }
+        },
+        {
+            "id": "link_valve_ethyl_acetate",
+            "source": "multiway_valve_1",
+            "target": "flask_ethyl_acetate",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "flask_ethyl_acetate": "outlet"
+            }
+        },
+        {
+            "id": "link_valve_methanol",
+            "source": "multiway_valve_1",
+            "target": "flask_methanol",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "4",
+                "flask_methanol": "outlet"
+            }
+        },
+        {
+            "id": "link_valve_column_vessel",
+            "source": "multiway_valve_1",
+            "target": "column_vessel",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "5",
+                "column_vessel": "inlet"
+            }
+        },
+        {
+            "id": "link_valve_collection1",
+            "source": "multiway_valve_1",
+            "target": "collection_flask_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "6",
+                "collection_flask_1": "inlet"
+            }
+        },
+        {
+            "id": "link_valve_collection2",
+            "source": "multiway_valve_1",
+            "target": "collection_flask_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "7",
+                "collection_flask_2": "inlet"
+            }
+        },
+        {
+            "id": "link_valve_waste",
+            "source": "multiway_valve_1",
+            "target": "waste_flask",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "8",
+                "waste_flask": "inlet"
+            }
+        },
+        {
+            "id": "link_column_device_vessel",
+            "source": "column_1",
+            "target": "column_vessel",
+            "type": "transport",
+            "port": {
+                "column_1": "columnin",
+                "column_vessel": "column_port"
+            }
+        },
+        {
+            "id": "link_column_collection3",
+            "source": "column_1",
+            "target": "collection_flask_3",
+            "type": "transport",
+            "port": {
+                "column_1": "columnout",
+                "collection_flask_3": "column_outlet"
+            }
+        }
+    ]
+}

test/experiments/Protocol_Test_Station/simple_stir_heatchill_test_station.json

@@ -0,0 +1,141 @@
+{
+    "nodes": [
+        {
+            "id": "SimpleStirHeatChillTestStation",
+            "name": "搅拌加热测试站",
+            "children": [
+                "stirrer_1",
+                "heatchill_1",
+                "main_reactor",
+                "secondary_reactor"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 500,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": [
+                    "StirProtocol",
+                    "StartStirProtocol", 
+                    "StopStirProtocol",
+                    "HeatChillProtocol", 
+                    "HeatChillStartProtocol", 
+                    "HeatChillStopProtocol"
+                ]
+            },
+            "data": {}
+        },
+        {
+            "id": "stirrer_1",
+            "name": "主搅拌器",
+            "children": [],
+            "parent": "SimpleStirHeatChillTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 400,
+                "y": 350,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_STIRRER1",
+                "max_speed": 1500.0,
+                "min_speed": 50.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "heatchill_1",
+            "name": "主加热冷却器",
+            "children": [],
+            "parent": "SimpleStirHeatChillTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 600,
+                "y": 350,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL_HEATCHILL1",
+                "max_temp": 200.0,
+                "min_temp": -80.0,
+                "max_stir_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "main_reactor",
+            "name": "主反应器",
+            "children": [],
+            "parent": "SimpleStirHeatChillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 500,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "liquid_type": "water",
+                        "liquid_volume": 500.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "secondary_reactor",
+            "name": "副反应器",
+            "children": [],
+            "parent": "SimpleStirHeatChillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 700,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_stirrer1_main_reactor",
+            "source": "stirrer_1",
+            "target": "main_reactor",
+            "type": "mechanical",
+            "port": {
+                "stirrer_1": "stirrer",
+                "main_reactor": "stirrer_port"
+            }
+        },
+        {
+            "id": "link_heatchill1_main_reactor",
+            "source": "heatchill_1",
+            "target": "main_reactor",
+            "type": "mechanical",
+            "port": {
+                "heatchill_1": "heatchill",
+                "main_reactor": "heating_jacket"
+            }
+        }
+    ]
+}

test/experiments/biomek.json

@@ -0,0 +1,22 @@
+{
+    "nodes": [
+        {
+            "id": "BIOMEK",
+            "name": "BIOMEK",
+            "parent": null,
+            "type": "device",
+            "class": "liquid_handler.biomek",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+            },
+            "data": {},
+            "children": [
+            ]
+        }
+    ],
+    "links": []
+}

test/experiments/camera.json

@@ -0,0 +1,45 @@
+{
+    "nodes": [
+        {
+            "id": "Camera",
+            "name": "摄像头",
+            "children": [
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "camera",
+            "position": {
+                "x": 0,
+                "y": 0,
+                "z": 0
+            },
+            "config": {
+                "camera_index": 0,
+                "period": 0.05
+            },
+            "data": {
+            }
+        },
+        {
+            "id": "Gripper1",
+            "name": "假夹爪",
+            "children": [
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "gripper.mock",
+            "position": {
+                "x": 0,
+                "y": 0,
+                "z": 0
+            },
+            "config": {
+            },
+            "data": {
+            }
+        }
+    ],
+    "links": [
+        
+    ]
+}

test/experiments/comprehensive_protocol/checklist.md

@@ -0,0 +1,222 @@
+1. 用到的仪器
+                virtual_multiway_valve(√)                                                     八通阀门
+                virtual_transfer_pump(√)                                                        转移泵
+                virtual_centrifuge()                                                            离心机
+                virtual_rotavap()                                                               旋蒸仪
+                virtual_heatchill()                                                             加热器
+                virtual_stirrer()                                                               搅拌器
+                virtual_solenoid_valve()                                                        电磁阀
+                virtual_vacuum_pump(√)                       vacuum_pump.mock                            真空泵
+                virtual_gas_source(√)                                                                    气源
+                virtual_filter()                                                                过滤器
+                virtual_column(√)                                                               层析柱
+                separator()                         homemade_grbl_conductivity                  分液漏斗
+2. 用到的protocol
+    PumpTransferProtocol: generate_pump_protocol_with_rinsing,                      (√)
+    这个重复了，删掉CleanProtocol: generate_clean_protocol,
+    SeparateProtocol: generate_separate_protocol,                           (×)
+    EvaporateProtocol: generate_evaporate_protocol,                                 (√)
+    EvacuateAndRefillProtocol: generate_evacuateandrefill_protocol,                 (√)
+    CentrifugeProtocol: generate_centrifuge_protocol,                               (√)
+    AddProtocol: generate_add_protocol,                                             (√)
+    FilterProtocol: generate_filter_protocol,                                       (√)
+    HeatChillProtocol: generate_heat_chill_protocol,                                (√)
+    HeatChillStartProtocol: generate_heat_chill_start_protocol,                     (√)
+    HeatChillStopProtocol: generate_heat_chill_stop_protocol,                       (√)
+    HeatChillToTempProtocol:
+    StirProtocol: generate_stir_protocol,                                           (√)
+    StartStirProtocol: generate_start_stir_protocol,                                (√)
+    StopStirProtocol: generate_stop_stir_protocol,                                  (√)
+    这个重复了，删掉TransferProtocol: generate_transfer_protocol,
+    CleanVesselProtocol: generate_clean_vessel_protocol,                            (√)
+    DissolveProtocol: generate_dissolve_protocol,                                   (√)
+    FilterThroughProtocol: generate_filter_through_protocol,                        (√)
+    RunColumnProtocol: generate_run_column_protocol,                                (√)<RunColumn Rf="?" column="column" from_vessel="rotavap" ratio="5:95" solvent1="methanol" solvent2="chloroform" to_vessel="rotavap"/>
+
+上下文体积搜索
+3. 还没创建的protocol
+    ResetHandling                         写完了                               <ResetHandling solvent="methanol"/>
+    Dry                                  写完了                                 <Dry compound="product" vessel="filter"/>
+    AdjustPH                               写完了                                <AdjustPH pH="8.0" reagent="hydrochloric acid" vessel="main_reactor"/>
+    Recrystallize                          写完了                              <Recrystallize ratio="?" solvent1="dichloromethane" solvent2="methanol" vessel="filter" volume="?"/>
+    TakeSample                                                                  <TakeSample id="a" vessel="rotavap"/>
+    Hydrogenate                                                                 <Hydrogenate temp="45 °C" time="?" vessel="main_reactor"/>
+4. 参数对齐
+
+class PumpTransferProtocol(BaseModel):
+    from_vessel: str
+    to_vessel: str
+    volume: float
+    amount: str = ""
+    time: float = 0
+    viscous: bool = False
+    rinsing_solvent: str = "air"        <Transfer from_vessel="main_reactor" to_vessel="rotavap"/>
+    rinsing_volume: float = 5000
+    rinsing_repeats: int = 2
+    solid: bool = False
+    flowrate: float = 500
+    transfer_flowrate: float = 2500
+
+class SeparateProtocol(BaseModel):
+    purpose: str
+    product_phase: str
+    from_vessel: str
+    separation_vessel: str
+    to_vessel: str
+    waste_phase_to_vessel: str
+    solvent: str
+    solvent_volume: float               <Separate product_phase="bottom" purpose="wash" solvent="water" vessel="separator" volume="?"/>
+    through: str
+    repeats: int
+    stir_time: float
+    stir_speed: float
+    settling_time: float
+
+
+class EvaporateProtocol(BaseModel):
+    vessel: str
+    pressure: float
+    temp: float                         <Evaporate solvent="ethanol" vessel="rotavap"/>
+    time: float
+    stir_speed: float
+
+
+class EvacuateAndRefillProtocol(BaseModel):
+    vessel: str
+    gas: str                            <EvacuateAndRefill gas="nitrogen" vessel="main_reactor"/>
+    repeats: int
+
+class AddProtocol(BaseModel):
+    vessel: str
+    reagent: str
+    volume: float
+    mass: float
+    amount: str
+    time: float
+    stir: bool
+    stir_speed: float                   <Add reagent="ethanol" vessel="main_reactor" volume="2.7 mL"/>
+    viscous: bool
+    purpose: str
+
+class CentrifugeProtocol(BaseModel):
+    vessel: str
+    speed: float
+    time: float                         自创的
+    temp: float
+
+class FilterProtocol(BaseModel):
+    vessel: str
+    filtrate_vessel: str
+    stir: bool                          <Filter vessel="filter"/>
+    stir_speed: float
+    temp: float
+    continue_heatchill: bool
+    volume: float
+
+class HeatChillProtocol(BaseModel):
+    vessel: str
+    temp: float
+    time: float                         <HeatChill pressure="1 mbar" temp_spec="room temperature" time="?" vessel="main_reactor"/>
+                                        <HeatChill temp_spec="room temperature" time_spec="overnight" vessel="main_reactor"/>
+    stir: bool
+    stir_speed: float
+    purpose: str
+
+class HeatChillStartProtocol(BaseModel):
+    vessel: str
+    temp: float                     疑似没有
+    purpose: str
+
+class HeatChillStopProtocol(BaseModel):
+    vessel: str                     疑似没有
+
+class StirProtocol(BaseModel):
+    stir_time: float
+    stir_speed: float               <Stir time="0.5 h" vessel="main_reactor"/>
+    settling_time: float
+
+class StartStirProtocol(BaseModel):
+    vessel: str
+    stir_speed: float               疑似没有
+    purpose: str
+
+class StopStirProtocol(BaseModel):
+    vessel: str                     疑似没有
+
+class TransferProtocol(BaseModel):
+    from_vessel: str
+    to_vessel: str
+    volume: float
+    amount: str = ""
+    time: float = 0
+    viscous: bool = False    <Transfer from_vessel="main_reactor" to_vessel="rotavap"/>
+    rinsing_solvent: str = ""
+    rinsing_volume: float = 0.0
+    rinsing_repeats: int = 0
+    solid: bool = False
+
+class CleanVesselProtocol(BaseModel):
+    vessel: str
+    solvent: str
+    volume: float
+    temp: float
+    repeats: int = 1                    <CleanVessel vessel="centrifuge"/>
+
+class DissolveProtocol(BaseModel):
+    vessel: str
+    solvent: str
+    volume: float   <Dissolve mass="2.9 g" mol="0.12 mol" reagent="magnesium" vessel="main_reactor"/>
+    amount: str = ""   
+    temp: float = 25.0
+    time: float = 0.0
+    stir_speed: float = 0.0
+
+class FilterThroughProtocol(BaseModel):
+    from_vessel: str
+    to_vessel: str
+    filter_through: str
+    eluting_solvent: str = ""
+    eluting_volume: float = 0.0                 疑似没有
+    eluting_repeats: int = 0
+    residence_time: float = 0.0
+
+class RunColumnProtocol(BaseModel):
+    from_vessel: str
+    to_vessel: str              <RunColumn Rf="?" column="column" from_vessel="rotavap" pct1="40 %" pct2="50 %" solvent1="ethyl acetate" solvent2="hexane" to_vessel="rotavap"/>
+    column: str
+
+class WashSolidProtocol(BaseModel):
+    vessel: str
+    solvent: str
+    volume: float
+    filtrate_vessel: str = ""
+    temp: float = 25.0          <WashSolid filtrate_vessel="rotavap" solvent="formic acid" vessel="main_reactor" volume="?"/>
+    stir: bool = False
+    stir_speed: float = 0.0
+    time: float = 0.0
+    repeats: int = 1
+
+class AdjustPHProtocol(BaseModel):
+    vessel: str = Field(..., description="目标容器")
+    ph_value: float = Field(..., description="目标pH值")  # 改为 ph_value
+    reagent: str = Field(..., description="酸碱试剂名称")
+    # 移除其他可选参数，使用默认值                                                   <新写的，没问题>
+
+class ResetHandlingProtocol(BaseModel):
+    solvent: str = Field(..., description="溶剂名称")                               <新写的，没问题>
+
+class DryProtocol(BaseModel):
+    compound: str = Field(..., description="化合物名称")                            <新写的，没问题>
+    vessel: str = Field(..., description="目标容器")
+
+class RecrystallizeProtocol(BaseModel):
+    ratio: str = Field(..., description="溶剂比例（如 '1:1', '3:7'）")
+    solvent1: str = Field(..., description="第一种溶剂名称")                        <新写的，没问题>
+    solvent2: str = Field(..., description="第二种溶剂名称")
+    vessel: str = Field(..., description="目标容器")
+    volume: float = Field(..., description="总体积 (mL)")
+
+class HydrogenateProtocol(BaseModel):
+    temp: str = Field(..., description="反应温度（如 '45 °C'）")
+    time: str = Field(..., description="反应时间（如 '2 h'）")                          <新写的，没问题>
+    vessel: str = Field(..., description="反应容器")

test/experiments/comprehensive_protocol/comprehensive_station.json

@@ -0,0 +1,969 @@
+{
+    "nodes": [
+        {
+            "id": "OrganicSynthesisStation",
+            "name": "有机化学流程综合测试工作站",
+            "children": [
+                "multiway_valve_1",
+                "multiway_valve_2",
+                "transfer_pump_1",
+                "transfer_pump_2",
+                "reagent_bottle_1",
+                "reagent_bottle_2",
+                "reagent_bottle_3",
+                "reagent_bottle_4",
+                "reagent_bottle_5",
+                "centrifuge_1",
+                "rotavap_1",
+                "main_reactor",
+                "heater_1",
+                "stirrer_1",
+                "stirrer_2",
+                "waste_bottle_1",
+                "waste_bottle_2",
+                "solenoid_valve_1",
+                "solenoid_valve_2",
+                "solenoid_valve_3",
+                "vacuum_pump_1",
+                "gas_source_1",
+                "h2_gas_source",
+                "filter_1",
+                "column_1",
+                "separator_1",
+                "collection_bottle_1",
+                "collection_bottle_2",
+                "collection_bottle_3"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 600,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": [
+                    "AddProtocol",
+                    "TransferProtocol",
+                    "StartStirProtocol",
+                    "StopStirProtocol",
+                    "StirProtocol",
+                    "RunColumnProtocol",
+                    "CentrifugeProtocol",
+                    "FilterProtocol",
+                    "CleanVesselProtocol",
+                    "DissolveProtocol",
+                    "FilterThroughProtocol",
+                    "WashSolidProtocol",
+                    "SeparateProtocol",
+                    "EvaporateProtocol",
+                    "HeatChillProtocol",
+                    "HeatChillStartProtocol",
+                    "HeatChillStopProtocol",
+                    "EvacuateAndRefillProtocol",
+                    "PumpTransferProtocol",
+                    "AdjustPHProtocol",
+                    "ResetHandlingProtocol",
+                    "DryProtocol",
+                    "HydrogenateProtocol",
+                    "RecrystallizeProtocol"
+                ]
+            },
+            "data": {}
+        },
+        {
+            "id": "multiway_valve_1",
+            "name": "八通阀门1",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 400,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "positions": 8
+            },
+            "data": {
+                "valve_state": "Ready",
+                "current_position": 1
+            }
+        },
+        {
+            "id": "multiway_valve_2",
+            "name": "八通阀门2",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 800,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "positions": 8
+            },
+            "data": {
+                "valve_state": "Ready",
+                "current_position": 1
+            }
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵1",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 350,
+                "y": 250,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 25.0,
+                "transfer_rate": 10.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_volume": 0.0
+            }
+        },
+        {
+            "id": "transfer_pump_2",
+            "name": "转移泵2",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 850,
+                "y": 250,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 25.0,
+                "transfer_rate": 10.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_volume": 0.0
+            }
+        },
+        {
+            "id": "reagent_bottle_1",
+            "name": "试剂瓶1-DMF",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 200,
+                "y": 150,
+                "z": 0
+            },
+            "config": {
+                "volume": 1000.0,
+                "reagent": "DMF"
+            },
+            "data": {
+                "current_volume": 1000.0,
+                "reagent_name": "DMF"
+            }
+        },
+        {
+            "id": "reagent_bottle_2",
+            "name": "试剂瓶2-乙酸乙酯",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 250,
+                "y": 150,
+                "z": 0
+            },
+            "config": {
+                "volume": 1000.0,
+                "reagent": "ethyl_acetate"
+            },
+            "data": {
+                "current_volume": 1000.0,
+                "reagent_name": "ethyl_acetate"
+            }
+        },
+        {
+            "id": "reagent_bottle_3",
+            "name": "试剂瓶3-己烷",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 300,
+                "y": 150,
+                "z": 0
+            },
+            "config": {
+                "volume": 1000.0,
+                "reagent": "hexane"
+            },
+            "data": {
+                "current_volume": 1000.0,
+                "reagent_name": "hexane"
+            }
+        },
+        {
+            "id": "reagent_bottle_4",
+            "name": "试剂瓶4-甲醇",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 900,
+                "y": 150,
+                "z": 0
+            },
+            "config": {
+                "volume": 1000.0,
+                "reagent": "methanol"
+            },
+            "data": {
+                "current_volume": 1000.0,
+                "reagent_name": "methanol"
+            }
+        },
+        {
+            "id": "reagent_bottle_5",
+            "name": "试剂瓶5-水",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 950,
+                "y": 150,
+                "z": 0
+            },
+            "config": {
+                "volume": 1000.0,
+                "reagent": "water"
+            },
+            "data": {
+                "current_volume": 1000.0,
+                "reagent_name": "water"
+            }
+        },
+        {
+            "id": "centrifuge_1",
+            "name": "离心机",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_centrifuge",
+            "position": {
+                "x": 200,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "max_speed": 15000.0,
+                "max_temp": 40.0,
+                "min_temp": 4.0
+            },
+            "data": {
+                "current_speed": 0.0,
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "rotavap_1",
+            "name": "旋转蒸发仪",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_rotavap",
+            "position": {
+                "x": 300,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "max_temp": 180.0,
+                "max_rotation_speed": 280.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_temp": 25.0,
+                "rotation_speed": 0.0
+            }
+        },
+        {
+            "id": "main_reactor",
+            "name": "主反应器",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 400,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "volume": 500.0,
+                "max_temp": 200.0,
+                "min_temp": -20.0,
+                "has_stirrer": true,
+                "has_heater": true
+            },
+            "data": {
+                "current_volume": 0.0,
+                "current_temp": 25.0
+            }
+        },
+        {
+            "id": "heater_1",
+            "name": "加热器",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 450,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_temp": 200.0,
+                "min_temp": -20.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_temp": 25.0
+            }
+        },
+        {
+            "id": "stirrer_1",
+            "name": "搅拌器1",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 350,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "max_speed": 2000.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_speed": 0.0
+            }
+        },
+        {
+            "id": "stirrer_2",
+            "name": "搅拌器2",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 351,
+                "y": 451,
+                "z": 0
+            },
+            "config": {
+                "max_speed": 2000.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_speed": 0.0
+            }
+        },
+        {
+            "id": "waste_bottle_1",
+            "name": "废液瓶1",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 500,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "volume": 2000.0
+            },
+            "data": {
+                "current_volume": 0.0
+            }
+        },
+        {
+            "id": "waste_bottle_2",
+            "name": "废液瓶2",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 1100,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "volume": 2000.0
+            },
+            "data": {
+                "current_volume": 0.0
+            }
+        },
+        {
+            "id": "solenoid_valve_1",
+            "name": "电磁阀1",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_solenoid_valve",
+            "position": {
+                "x": 700,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "voltage": 12.0,
+                "response_time": 0.1
+            },
+            "data": {
+                "valve_state": "Closed",
+                "is_open": false
+            }
+        },
+        {
+            "id": "solenoid_valve_2",
+            "name": "电磁阀2",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_solenoid_valve",
+            "position": {
+                "x": 700,
+                "y": 150,
+                "z": 0
+            },
+            "config": {
+                "voltage": 12.0,
+                "response_time": 0.1
+            },
+            "data": {
+                "valve_state": "Closed",
+                "is_open": false
+            }
+        },
+        {
+            "id": "solenoid_valve_3",
+            "name": "氢气电磁阀",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_solenoid_valve",
+            "position": {
+                "x": 450,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "voltage": 12.0,
+                "response_time": 0.1,
+                "gas_compatible": true
+            },
+            "data": {
+                "valve_state": "Closed",
+                "is_open": false
+            }
+        },
+        {
+            "id": "vacuum_pump_1",
+            "name": "真空泵",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_vacuum_pump",
+            "position": {
+                "x": 650,
+                "y": 200,
+                "z": 0
+            },
+            "config": {
+                "max_vacuum": 0.1,
+                "pump_rate": 50.0
+            },
+            "data": {
+                "status": "Off",
+                "current_vacuum": 1.0
+            }
+        },
+        {
+            "id": "gas_source_1",
+            "name": "气源",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_gas_source",
+            "position": {
+                "x": 650,
+                "y": 150,
+                "z": 0
+            },
+            "config": {},
+            "data": {
+                "gas_type": "nitrogen",
+                "max_pressure": 5.0
+            }
+        },
+        {
+            "id": "h2_gas_source",
+            "name": "氢气气源",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_gas_source",
+            "position": {
+                "x": 500,
+                "y": 350,
+                "z": 0
+            },
+            "config": {
+                "max_pressure": 10.0,
+                "gas_type": "hydrogen"
+            },
+            "data": {
+                "gas_type": "hydrogen",
+                "max_pressure": 10.0,
+                "current_pressure": 0.0,
+                "status": "OFF"
+            }
+        },
+        {
+            "id": "filter_1",
+            "name": "过滤器",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_filter",
+            "position": {
+                "x": 900,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "filter_type": "membrane",
+                "max_pressure": 5.0
+            },
+            "data": {
+                "status": "Ready",
+                "pressure": 0.0
+            }
+        },
+        {
+            "id": "column_1",
+            "name": "洗脱柱",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_column",
+            "position": {
+                "x": 950,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "column_type": "silica_gel",
+                "length": 30.0,
+                "diameter": 2.5
+            },
+            "data": {
+                "status": "Ready",
+                "loaded": false
+            }
+        },
+        {
+            "id": "separator_1",
+            "name": "分液器",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "device",
+            "class": "virtual_separator",
+            "position": {
+                "x": 1000,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "volume": 250.0,
+                "has_phases": true
+            },
+            "data": {
+                "status": "Ready",
+                "phase_separation": false
+            }
+        },
+        {
+            "id": "collection_bottle_1",
+            "name": "接收瓶1",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 900,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "volume": 250.0
+            },
+            "data": {
+                "current_volume": 0.0
+            }
+        },
+        {
+            "id": "collection_bottle_2",
+            "name": "接收瓶2",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 950,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "volume": 250.0
+            },
+            "data": {
+                "current_volume": 0.0
+            }
+        },
+        {
+            "id": "collection_bottle_3",
+            "name": "接收瓶3",
+            "children": [],
+            "parent": "OrganicSynthesisStation",
+            "type": "container",
+            "class": "container",
+            "position": {
+                "x": 1050,
+                "y": 500,
+                "z": 0
+            },
+            "config": {
+                "volume": 250.0
+            },
+            "data": {
+                "current_volume": 0.0
+            }
+        }
+    ],
+    "links": [
+        {
+            "id": "link_pump1_valve1",
+            "source": "transfer_pump_1",
+            "target": "multiway_valve_1",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_1": "transferpump",
+                "multiway_valve_1": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve1_reagent1",
+            "source": "multiway_valve_1",
+            "target": "reagent_bottle_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "1",
+                "reagent_bottle_1": "top"
+            }
+        },
+        {
+            "id": "link_valve1_reagent2",
+            "source": "multiway_valve_1",
+            "target": "reagent_bottle_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "2",
+                "reagent_bottle_2": "top"
+            }
+        },
+        {
+            "id": "link_valve1_reagent3",
+            "source": "multiway_valve_1",
+            "target": "reagent_bottle_3",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "3",
+                "reagent_bottle_3": "top"
+            }
+        },
+        {
+            "id": "link_valve1_centrifuge",
+            "source": "multiway_valve_1",
+            "target": "centrifuge_1",
+            "type": "transport",
+            "port": {
+                "multiway_valve_1": "4",
+                "centrifuge_1": "centrifuge"
+            }
+        },
+        {
+            "id": "link_valve1_rotavap",
+            "source": "multiway_valve_1",
+            "target": "rotavap_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "5",
+                "rotavap_1": "samplein"
+            }
+        },
+        {
+            "id": "link_valve1_reactor",
+            "source": "multiway_valve_1",
+            "target": "main_reactor",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "6",
+                "main_reactor": "top"
+            }
+        },
+        {
+            "id": "link_valve1_waste1",
+            "source": "multiway_valve_1",
+            "target": "waste_bottle_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "7",
+                "waste_bottle_1": "top"
+            }
+        },
+        {
+            "id": "link_valve1_valve2",
+            "source": "multiway_valve_1",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_1": "8",
+                "multiway_valve_2": "1"
+            }
+        },
+        {
+            "id": "link_pump2_valve2",
+            "source": "transfer_pump_2",
+            "target": "multiway_valve_2",
+            "type": "fluid",
+            "port": {
+                "transfer_pump_2": "transferpump",
+                "multiway_valve_2": "transferpump"
+            }
+        },
+        {
+            "id": "link_valve2_solenoid1",
+            "source": "multiway_valve_2",
+            "target": "solenoid_valve_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "2",
+                "solenoid_valve_1": "in"
+            }
+        },
+        {
+            "id": "link_vacuum_solenoid1",
+            "source": "vacuum_pump_1",
+            "target": "solenoid_valve_1",
+            "type": "fluid",
+            "port": {
+                "vacuum_pump_1": "vacuumpump",
+                "solenoid_valve_1": "out"
+            }
+        },
+        {
+            "id": "link_valve2_solenoid2",
+            "source": "multiway_valve_2",
+            "target": "solenoid_valve_2",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "3",
+                "solenoid_valve_2": "in"
+            }
+        },
+        {
+            "id": "link_gas_solenoid2",
+            "source": "gas_source_1",
+            "target": "solenoid_valve_2",
+            "type": "fluid",
+            "port": {
+                "gas_source_1": "gassource",
+                "solenoid_valve_2": "out"
+            }
+        },
+        {
+            "id": "link_valve2_filter",
+            "source": "multiway_valve_2",
+            "target": "filter_1",
+            "type": "transport",
+            "port": {
+                "multiway_valve_2": "4",
+                "filter_1": "filterin"
+            }
+        },
+        {
+            "id": "link_valve2_column",
+            "source": "multiway_valve_2",
+            "target": "column_1",
+            "type": "transport",
+            "port": {
+                "multiway_valve_2": "5",
+                "column_1": "columnin"
+            }
+        },
+        {
+            "id": "link_column_collection2",
+            "source": "column_1",
+            "target": "collection_bottle_2",
+            "type": "transport",
+            "port": {
+                "column_1": "columnout",
+                "collection_bottle_2": "top"
+            }
+        },
+        {
+            "id": "link_valve2_separator",
+            "source": "multiway_valve_2",
+            "target": "separator_1",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "6",
+                "separator_1": "separatorin"
+            }
+        },
+        {
+            "id": "link_separator_collection3",
+            "source": "separator_1",
+            "target": "collection_bottle_3",
+            "type": "fluid",
+            "port": {
+                "separator_1": "bottomphaseout",
+                "collection_bottle_3": "top"
+            }
+        },
+        {
+            "id": "link_valve2_reagent4",
+            "source": "multiway_valve_2",
+            "target": "reagent_bottle_4",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "7",
+                "reagent_bottle_4": "top"
+            }
+        },
+        {
+            "id": "link_valve2_reagent5",
+            "source": "multiway_valve_2",
+            "target": "reagent_bottle_5",
+            "type": "fluid",
+            "port": {
+                "multiway_valve_2": "8",
+                "reagent_bottle_5": "top"
+            }
+        },
+        {
+            "id": "mech_stirrer_reactor",
+            "source": "stirrer_1",
+            "target": "main_reactor",
+            "type": "mechanical",
+            "port": {
+                "stirrer_1": "stirrer",
+                "main_reactor": "bind"
+            }
+        },
+        {
+            "id": "thermal_heater_reactor",
+            "source": "heater_1",
+            "target": "main_reactor",
+            "type": "mechanical",
+            "port": {
+                "heater_1": "heatchill",
+                "main_reactor": "bind"
+            }
+        },
+        {
+            "id": "link_separator_waste2",
+            "source": "separator_1",
+            "target": "waste_bottle_2",
+            "type": "fluid",
+            "port": {
+                "separator_1": "topphaseout",
+                "waste_bottle_2": "top"
+            }
+        },
+        {
+            "id": "mech_stirrer2_separator",
+            "source": "stirrer_2",
+            "target": "separator_1",
+            "type": "mechanical",
+            "port": {
+                "stirrer_2": "stirrer",
+                "separator_1": "bind"
+            }
+        },
+        {
+            "id": "link_filter_filtrate_to_collection1",
+            "source": "filter_1",
+            "target": "collection_bottle_1",
+            "type": "transport",
+            "port": {
+                "filter_1": "filtrateout",
+                "collection_bottle_1": "top"
+            }
+        },
+        {
+            "id": "link_filter_retentate_to_waste1",
+            "source": "filter_1",
+            "target": "waste_bottle_1",
+            "type": "transport",
+            "port": {
+                "filter_1": "retentateout",
+                "waste_bottle_1": "top"
+            }
+        },
+        {
+            "id": "link_h2_gas_to_valve3",
+            "source": "h2_gas_source",
+            "target": "solenoid_valve_3",
+            "type": "fluid",
+            "port": {
+                "h2_gas_source": "gassource",
+                "solenoid_valve_3": "in"
+            }
+        },
+        {
+            "id": "link_valve3_to_reactor",
+            "source": "solenoid_valve_3",
+            "target": "main_reactor",
+            "type": "fluid",
+            "port": {
+                "solenoid_valve_3": "out",
+                "main_reactor": "top"
+            }
+        }
+    ]
+}

test/experiments/mock_devices/mock_all.json

@@ -0,0 +1,314 @@
+{
+    "nodes": [
+        {  
+            "id": "MockChiller1",  
+            "name": "模拟冷却器",  
+            "children": [
+                "MockContainerForChiller1"
+            ],
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_chiller",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "current_temperature": 25.0,  
+                "target_temperature": 25.0,  
+                "status": "Idle",  
+                "is_cooling": false,  
+                "is_heating": false,
+                "vessel": "",
+                "purpose": ""
+            }  
+        },
+        {
+            "id": "MockContainerForChiller1",
+            "name": "模拟容器",
+            "type": "container",
+            "parent": "MockChiller1",
+            "position": {
+                "x": 5,
+                "y": 0,
+                "z": 0
+            },
+            "data": {
+                "liquid_type": "CuCl2",
+                "liquid_volume": "100"
+            },
+            "children": []
+        },
+        {  
+            "id": "MockFilter1",  
+            "name": "模拟过滤器",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_filter",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",  
+                "is_filtering": false,  
+                "flow_rate": 0.0,
+                "filter_life": 100.0,
+                "vessel": "",
+                "filtrate_vessel": "",
+                "filtered_volume": 0.0,
+                "target_volume": 0.0,
+                "progress": 0.0,
+                "stir": false,
+                "stir_speed": 0.0,
+                "temperature": 25.0,
+                "continue_heatchill": false
+            }  
+        },
+        {  
+            "id": "MockHeater1",  
+            "name": "模拟加热器",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_heater",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "current_temperature": 25.0,  
+                "target_temperature": 25.0,  
+                "status": "Idle",  
+                "is_heating": false,  
+                "heating_power": 0.0,  
+                "max_temperature": 300.0,
+                "vessel": "Unknown",
+                "purpose": "Unknown",
+                "stir": false,
+                "stir_speed": 0.0
+            }  
+        },
+        {  
+            "id": "MockPump1",  
+            "name": "模拟泵设备",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_pump",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",
+                "current_device": "MockPump1",
+                "pump_state": "Stopped",  
+                "flow_rate": 0.0,  
+                "target_flow_rate": 0.0,  
+                "pressure": 0.0,  
+                "total_volume": 0.0,  
+                "max_flow_rate": 100.0,  
+                "max_pressure": 10.0,
+                "from_vessel": "",
+                "to_vessel": "",
+                "transfer_volume": 0.0,
+                "amount": "",
+                "transfer_time": 0.0,
+                "is_viscous": false,
+                "rinsing_solvent": "",
+                "rinsing_volume": 0.0,
+                "rinsing_repeats": 0,
+                "is_solid": false,
+                "time_spent": 0.0,
+                "time_remaining": 0.0
+            }  
+        },
+        {  
+            "id": "MockRotavap1",  
+            "name": "模拟旋转蒸发器",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_rotavap",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",  
+                "rotate_state": "Stopped",  
+                "rotate_time": 0.0,  
+                "rotate_speed": 0.0,  
+                "pump_state": "Stopped",  
+                "pump_time": 0.0,  
+                "vacuum_level": 1013.25,  
+                "temperature": 25.0,  
+                "target_temperature": 25.0,  
+                "success": "True"  
+            }  
+        },
+        {
+            "id": "MockSeparator1",
+            "name": "模拟分离器",
+            "children": [],
+            "parent": null,
+            "type": "device",
+            "class": "mock_separator",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "port": "MOCK"
+            },
+            "data": {
+                "status": "Idle",
+                "settling_time": 0.0,
+                "valve_state": "Closed",
+                "shake_time": 0.0,
+                "shake_status": "Not Shaking",
+                "current_device": "MockSeparator1",
+                "purpose": "",
+                "product_phase": "",
+                "from_vessel": "",
+                "separation_vessel": "",
+                "to_vessel": "",
+                "waste_phase_to_vessel": "",
+                "solvent": "",
+                "solvent_volume": 0.0,
+                "through": "",
+                "repeats": 1,
+                "stir_time": 0.0,
+                "stir_speed": 0.0,
+                "time_spent": 0.0,
+                "time_remaining": 0.0
+            }
+        },
+        {  
+            "id": "MockSolenoidValve1",  
+            "name": "模拟电磁阀",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_solenoid_valve",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",  
+                "valve_status": "Closed"  
+            }  
+        },
+        {  
+            "id": "MockStirrer1NEW",  
+            "name": "模拟搅拌器(new)",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_stirrer_new",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",
+                "vessel": "",
+                "purpose": "",
+                "stir_speed": 0.0,  
+                "target_stir_speed": 0.0,  
+                "stir_state": "Stopped",
+                "stir_time": 0.0,
+                "settling_time": 0.0,
+                "progress": 0.0,
+                "max_stir_speed": 2000.0
+            }  
+        },
+        {  
+            "id": "MockStirrer1",  
+            "name": "模拟搅拌器",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_stirrer",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",   
+                "stir_speed": 0.0,  
+                "target_stir_speed": 0.0,  
+                "stir_state": "Stopped",  
+                "temperature": 25.0,  
+                "target_temperature": 25.0,  
+                "heating_state": "Off",  
+                "heating_power": 0.0,  
+                "max_stir_speed": 2000.0,  
+                "max_temperature": 300.0  
+            }  
+        },
+        {  
+            "id": "MockVacuum1",  
+            "name": "模拟真空泵",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_vacuum",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",  
+                "power_state": "Off",  
+                "pump_state": "Stopped",  
+                "vacuum_level": 1013.25,  
+                "target_vacuum": 50.0,  
+                "pump_speed": 0.0,  
+                "pump_efficiency": 95.0,  
+                "max_pump_speed": 100.0  
+            }  
+        }
+    ],
+    "links": []
+}

test/experiments/mock_devices/mock_chiller.json

@@ -0,0 +1,30 @@
+{  
+    "nodes": [  
+        {  
+            "id": "MockChiller1",  
+            "name": "模拟冷却器",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_chiller",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "current_temperature": 25.0,  
+                "target_temperature": 25.0,  
+                "status": "Idle",  
+                "is_cooling": false,  
+                "is_heating": false,
+                "vessel": "",
+                "purpose": ""
+            }  
+        }  
+    ],  
+    "links": []  
+}

test/experiments/mock_devices/mock_filter.json

@@ -0,0 +1,36 @@
+{  
+    "nodes": [  
+        {  
+            "id": "MockFilter1",  
+            "name": "模拟过滤器",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_filter",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",  
+                "is_filtering": false,  
+                "flow_rate": 0.0,
+                "filter_life": 100.0,
+                "vessel": "",
+                "filtrate_vessel": "",
+                "filtered_volume": 0.0,
+                "target_volume": 0.0,
+                "progress": 0.0,
+                "stir": false,
+                "stir_speed": 0.0,
+                "temperature": 25.0,
+                "continue_heatchill": false
+            }  
+        }  
+    ],  
+    "links": []  
+}

test/experiments/mock_devices/mock_heater.json

@@ -0,0 +1,33 @@
+{  
+    "nodes": [  
+        {  
+            "id": "MockHeater1",  
+            "name": "模拟加热器",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_heater",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "current_temperature": 25.0,  
+                "target_temperature": 25.0,  
+                "status": "Idle",  
+                "is_heating": false,  
+                "heating_power": 0.0,  
+                "max_temperature": 300.0,
+                "vessel": "Unknown",
+                "purpose": "Unknown",
+                "stir": false,
+                "stir_speed": 0.0
+            }  
+        }  
+    ],  
+    "links": []  
+}

test/experiments/mock_devices/mock_pump.json

@@ -0,0 +1,44 @@
+{  
+    "nodes": [  
+        {  
+            "id": "MockPump1",  
+            "name": "模拟泵设备",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_pump",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",
+                "current_device": "MockPump1",
+                "pump_state": "Stopped",  
+                "flow_rate": 0.0,  
+                "target_flow_rate": 0.0,  
+                "pressure": 0.0,  
+                "total_volume": 0.0,  
+                "max_flow_rate": 100.0,  
+                "max_pressure": 10.0,
+                "from_vessel": "",
+                "to_vessel": "",
+                "transfer_volume": 0.0,
+                "amount": "",
+                "transfer_time": 0.0,
+                "is_viscous": false,
+                "rinsing_solvent": "",
+                "rinsing_volume": 0.0,
+                "rinsing_repeats": 0,
+                "is_solid": false,
+                "time_spent": 0.0,
+                "time_remaining": 0.0
+            }  
+        }  
+    ],  
+    "links": []  
+}

test/experiments/mock_devices/mock_rotavap.json

@@ -0,0 +1,33 @@
+{  
+    "nodes": [  
+        {  
+            "id": "MockRotavap1",  
+            "name": "模拟旋转蒸发器",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_rotavap",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",  
+                "rotate_state": "Stopped",  
+                "rotate_time": 0.0,  
+                "rotate_speed": 0.0,  
+                "pump_state": "Stopped",  
+                "pump_time": 0.0,  
+                "vacuum_level": 1013.25,  
+                "temperature": 25.0,  
+                "target_temperature": 25.0,  
+                "success": "True"  
+            }  
+        }  
+    ],  
+    "links": []  
+}

test/experiments/mock_devices/mock_separator.json

@@ -0,0 +1,43 @@
+{
+    "nodes": [
+        {
+            "id": "MockSeparator1",
+            "name": "模拟分离器",
+            "children": [],
+            "parent": null,
+            "type": "device",
+            "class": "mock_separator",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "port": "MOCK"
+            },
+            "data": {
+                "status": "Idle",
+                "settling_time": 0.0,
+                "valve_state": "Closed",
+                "shake_time": 0.0,
+                "shake_status": "Not Shaking",
+                "current_device": "MockSeparator1",
+                "purpose": "",
+                "product_phase": "",
+                "from_vessel": "",
+                "separation_vessel": "",
+                "to_vessel": "",
+                "waste_phase_to_vessel": "",
+                "solvent": "",
+                "solvent_volume": 0.0,
+                "through": "",
+                "repeats": 1,
+                "stir_time": 0.0,
+                "stir_speed": 0.0,
+                "time_spent": 0.0,
+                "time_remaining": 0.0
+            }
+        }
+    ],
+    "links": []
+}

test/experiments/mock_devices/mock_solenoid_valve.json

@@ -0,0 +1,25 @@
+{  
+    "nodes": [  
+        {  
+            "id": "MockSolenoidValve1",  
+            "name": "模拟电磁阀",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_solenoid_valve",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",  
+                "valve_status": "Closed"  
+            }  
+        }  
+    ],  
+    "links": []  
+}

test/experiments/mock_devices/mock_stirrer.json

@@ -0,0 +1,33 @@
+{  
+    "nodes": [  
+        {  
+            "id": "MockStirrer1",  
+            "name": "模拟搅拌器",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_stirrer",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",   
+                "stir_speed": 0.0,  
+                "target_stir_speed": 0.0,  
+                "stir_state": "Stopped",  
+                "temperature": 25.0,  
+                "target_temperature": 25.0,  
+                "heating_state": "Off",  
+                "heating_power": 0.0,  
+                "max_stir_speed": 2000.0,  
+                "max_temperature": 300.0  
+            }  
+        }  
+    ],  
+    "links": []  
+}

test/experiments/mock_devices/mock_stirrer_new.json

@@ -0,0 +1,33 @@
+{  
+    "nodes": [  
+        {  
+            "id": "MockStirrer1COPY",  
+            "name": "模拟搅拌器(Copy)",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_stirrer_new",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",
+                "vessel": "",
+                "purpose": "",
+                "stir_speed": 0.0,  
+                "target_stir_speed": 0.0,  
+                "stir_state": "Stopped",
+                "stir_time": 0.0,
+                "settling_time": 0.0,
+                "progress": 0.0,
+                "max_stir_speed": 2000.0
+            }  
+        }  
+    ],  
+    "links": []  
+}

test/experiments/mock_devices/mock_vacuum.json

@@ -0,0 +1,31 @@
+{  
+    "nodes": [  
+        {  
+            "id": "MockVacuum1",  
+            "name": "模拟真空泵",  
+            "children": [],  
+            "parent": null,  
+            "type": "device",  
+            "class": "mock_vacuum",  
+            "position": {  
+                "x": 620.6111111111111,  
+                "y": 171,  
+                "z": 0  
+            },  
+            "config": {  
+                "port": "MOCK"  
+            },  
+            "data": {  
+                "status": "Idle",  
+                "power_state": "Off",  
+                "pump_state": "Stopped",  
+                "vacuum_level": 1013.25,  
+                "target_vacuum": 50.0,  
+                "pump_speed": 0.0,  
+                "pump_efficiency": 95.0,  
+                "max_pump_speed": 100.0  
+            }  
+        }  
+    ],  
+    "links": []  
+}

test/experiments/mock_protocol/addteststation.json

@@ -0,0 +1,376 @@
+{
+    "nodes": [
+        {
+            "id": "AddTestStation",
+            "name": "添加试剂测试工作站",
+            "children": [
+                "transfer_pump",
+                "multiway_valve", 
+                "stirrer",
+                "flask_reagent1",
+                "flask_reagent2",
+                "flask_reagent3",
+                "flask_reagent4",
+                "reactor",
+                "flask_waste",
+                "flask_rinsing",
+                "flask_buffer"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["AddProtocol", "TransferProtocol", "StartStirProtocol", "StopStirProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump",
+            "name": "注射器泵",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 520,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 50.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "multiway_valve",
+            "name": "八通阀门",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "device",
+            "class": "virtual_multiway_valve",
+            "position": {
+                "x": 420,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "positions": 8
+            },
+            "data": {
+                "status": "Idle",
+                "current_position": 1
+            }
+        },
+        {
+            "id": "stirrer",
+            "name": "搅拌器",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 720,
+                "y": 450,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 100.0,
+                "max_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "flask_reagent1",
+            "name": "试剂瓶1 (甲醇)",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "甲醇",
+                        "volume": 800.0,
+                        "concentration": "99.9%"
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_reagent2",
+            "name": "试剂瓶2 (乙醇)",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 180,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "乙醇",
+                        "volume": 750.0,
+                        "concentration": "95%"
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_reagent3",
+            "name": "试剂瓶3 (丙酮)",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 260,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "丙酮",
+                        "volume": 900.0,
+                        "concentration": "99.5%"
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_reagent4",
+            "name": "试剂瓶4 (二氯甲烷)",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 340,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "二氯甲烷",
+                        "volume": 850.0,
+                        "concentration": "99.8%"
+                    }
+                ]
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 720,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_waste",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 850,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 3000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_rinsing",
+            "name": "冲洗液瓶",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 950,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "去离子水",
+                        "volume": 800.0,
+                        "concentration": "纯净"
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_buffer",
+            "name": "缓冲液瓶",
+            "children": [],
+            "parent": "AddTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 950,
+                "y": 400,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "磷酸盐缓冲液",
+                        "volume": 700.0,
+                        "concentration": "0.1M, pH 7.4"
+                    }
+                ]
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "transfer_pump",
+            "target": "multiway_valve",
+            "type": "physical",
+            "port": {
+                "transfer_pump": "syringe-port",
+                "multiway_valve": "multiway-valve-inlet"
+            }
+        },
+        {
+            "source": "multiway_valve",
+            "target": "flask_reagent1",
+            "type": "physical",
+            "port": {
+                "multiway_valve": "multiway-valve-port-1",
+                "flask_reagent1": "top"
+            }
+        },
+        {
+            "source": "multiway_valve",
+            "target": "flask_reagent2",
+            "type": "physical",
+            "port": {
+                "multiway_valve": "multiway-valve-port-2",
+                "flask_reagent2": "top"
+            }
+        },
+        {
+            "source": "multiway_valve",
+            "target": "flask_reagent3",
+            "type": "physical",
+            "port": {
+                "multiway_valve": "multiway-valve-port-3",
+                "flask_reagent3": "top"
+            }
+        },
+        {
+            "source": "multiway_valve",
+            "target": "flask_reagent4",
+            "type": "physical",
+            "port": {
+                "multiway_valve": "multiway-valve-port-4",
+                "flask_reagent4": "top"
+            }
+        },
+        {
+            "source": "multiway_valve",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "multiway_valve": "multiway-valve-port-5",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "multiway_valve",
+            "target": "flask_waste",
+            "type": "physical",
+            "port": {
+                "multiway_valve": "multiway-valve-port-6",
+                "flask_waste": "top"
+            }
+        },
+        {
+            "source": "multiway_valve",
+            "target": "flask_rinsing",
+            "type": "physical",
+            "port": {
+                "multiway_valve": "multiway-valve-port-7",
+                "flask_rinsing": "top"
+            }
+        },
+        {
+            "source": "multiway_valve",
+            "target": "flask_buffer",
+            "type": "physical",
+            "port": {
+                "multiway_valve": "multiway-valve-port-8",
+                "flask_buffer": "top"
+            }
+        },
+        {
+            "source": "stirrer",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "stirrer": "stirrer-vessel",
+                "reactor": "bottom"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/centrifugeteststation.json

@@ -0,0 +1,271 @@
+{
+    "nodes": [
+        {
+            "id": "CentrifugeTestStation",
+            "name": "离心机测试工作站",
+            "children": [
+                "pump_add",
+                "flask_1",
+                "flask_2", 
+                "flask_3",
+                "reactor",
+                "stirrer",
+                "centrifuge_1",
+                "flask_air"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["AddProtocol", "PumpTransferProtocol", "CleanProtocol", "CentrifugeProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "pump_add",
+            "name": "pump_add",
+            "children": [],
+            "parent": "CentrifugeTestStation",
+            "type": "device",
+            "class": "virtual_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 25.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "stirrer",
+            "name": "stirrer",
+            "children": [],
+            "parent": "CentrifugeTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 650.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 100.0,
+                "max_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "centrifuge_1",
+            "name": "离心机",
+            "children": [],
+            "parent": "CentrifugeTestStation",
+            "type": "device",
+            "class": "virtual_centrifuge",
+            "position": {
+                "x": 800,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_speed": 15000.0,
+                "max_temp": 40.0,
+                "min_temp": 4.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "flask_1",
+            "name": "样品瓶1",
+            "children": [],
+            "parent": "CentrifugeTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_2",
+            "name": "样品瓶2",
+            "children": [],
+            "parent": "CentrifugeTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_3",
+            "name": "缓冲液瓶",
+            "children": [],
+            "parent": "CentrifugeTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "CentrifugeTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 5000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "CentrifugeTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 950,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "stirrer",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "stirrer": "top",
+                "reactor": "bottom"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_1",
+            "type": "physical",
+            "port": {
+                "pump_add": "outlet",
+                "flask_1": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_2",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_2": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_3",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_3": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "pump_add": "outlet",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_air",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_air": "top"
+            }
+        },
+        {
+            "source": "centrifuge_1",
+            "target": "reactor",
+            "type": "logical",
+            "port": {
+                "centrifuge_1": "chamber",
+                "reactor": "vessel"
+            }
+        },
+        {
+            "source": "centrifuge_1",
+            "target": "flask_1",
+            "type": "logical",
+            "port": {
+                "centrifuge_1": "chamber",
+                "flask_1": "vessel"
+            }
+        },
+        {
+            "source": "centrifuge_1",
+            "target": "flask_2",
+            "type": "logical",
+            "port": {
+                "centrifuge_1": "chamber",
+                "flask_2": "vessel"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/cleanvesselteststation.json

@@ -0,0 +1,362 @@
+{
+    "nodes": [
+        {
+            "id": "CleanVesselTestStation",
+            "name": "容器清洗测试工作站",
+            "children": [
+                "transfer_pump_cleaner",
+                "heatchill_1",
+                "flask_water",
+                "flask_ethanol",
+                "flask_acetone",
+                "flask_waste",
+                "reactor",
+                "flask_buffer",
+                "flask_sample",
+                "flask_air"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["CleanVesselProtocol", "TransferProtocol", "AddProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_cleaner",
+            "name": "清洗转移泵",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 50.0,
+                "transfer_rate": 10.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_volume": 0.0,
+                "max_volume": 50.0,
+                "transfer_rate": 10.0,
+                "from_vessel": "",
+                "to_vessel": "",
+                "progress": 0.0,
+                "transferred_volume": 0.0,
+                "current_status": "Ready"
+            }
+        },
+        {
+            "id": "heatchill_1",
+            "name": "加热冷却器",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 650.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 150.0,
+                "min_temp": -20.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_temp": 25.0,
+                "target_temp": 25.0,
+                "vessel": "",
+                "purpose": "",
+                "progress": 0.0,
+                "current_status": "Ready"
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "水溶剂瓶",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "water",
+                        "volume": 1500.0,
+                        "concentration": 100.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethanol",
+            "name": "乙醇溶剂瓶",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "ethanol",
+                        "volume": 1500.0,
+                        "concentration": 99.5
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_acetone",
+            "name": "丙酮溶剂瓶",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "acetone",
+                        "volume": 1800.0,
+                        "concentration": 99.9
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_waste",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 550,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 5000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "residue",
+                        "volume": 50.0,
+                        "concentration": 100.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_buffer",
+            "name": "缓冲液瓶",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 850,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "buffer",
+                        "volume": 1000.0,
+                        "concentration": 10.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_sample",
+            "name": "样品瓶",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 1000,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "CleanVesselTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 950,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "transfer_pump_cleaner",
+            "target": "flask_water",
+            "type": "physical",
+            "port": {
+                "transfer_pump_cleaner": "1",
+                "flask_water": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_cleaner",
+            "target": "flask_ethanol",
+            "type": "physical",
+            "port": {
+                "transfer_pump_cleaner": "2",
+                "flask_ethanol": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_cleaner",
+            "target": "flask_acetone",
+            "type": "physical",
+            "port": {
+                "transfer_pump_cleaner": "3",
+                "flask_acetone": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_cleaner",
+            "target": "flask_waste",
+            "type": "physical",
+            "port": {
+                "transfer_pump_cleaner": "4",
+                "flask_waste": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_cleaner",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "transfer_pump_cleaner": "5",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_cleaner",
+            "target": "flask_buffer",
+            "type": "physical",
+            "port": {
+                "transfer_pump_cleaner": "6",
+                "flask_buffer": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_cleaner",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "transfer_pump_cleaner": "7",
+                "flask_sample": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_cleaner",
+            "target": "flask_air",
+            "type": "physical",
+            "port": {
+                "transfer_pump_cleaner": "8",
+                "flask_air": "top"
+            }
+        },
+        {
+            "source": "heatchill_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "heatchill_1": "heating_element",
+                "reactor": "bottom"
+            }
+        },
+        {
+            "source": "heatchill_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "heatchill_1": "heating_element",
+                "flask_sample": "bottom"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/dissolveteststation.json

@@ -0,0 +1,343 @@
+{
+    "nodes": [
+        {
+            "id": "DissolveTestStation",
+            "name": "溶解测试工作站",
+            "children": [
+                "transfer_pump_1",
+                "heatchill_1",
+                "stirrer_1",
+                "flask_water",
+                "flask_ethanol",
+                "flask_dmso",
+                "reactor",
+                "flask_sample",
+                "flask_buffer"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["DissolveProtocol", "TransferProtocol", "HeatChillProtocol", "StirProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵",
+            "children": [],
+            "parent": "DissolveTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 50.0,
+                "transfer_rate": 10.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_volume": 0.0,
+                "max_volume": 50.0,
+                "transfer_rate": 10.0,
+                "from_vessel": "",
+                "to_vessel": "",
+                "progress": 0.0,
+                "transferred_volume": 0.0,
+                "current_status": "Ready"
+            }
+        },
+        {
+            "id": "heatchill_1",
+            "name": "加热冷却器",
+            "children": [],
+            "parent": "DissolveTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 650.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 150.0,
+                "min_temp": -20.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_temp": 25.0,
+                "target_temp": 25.0,
+                "vessel": "",
+                "purpose": "",
+                "progress": 0.0,
+                "current_status": "Ready"
+            }
+        },
+        {
+            "id": "stirrer_1",
+            "name": "搅拌器",
+            "children": [],
+            "parent": "DissolveTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 750.1111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "水溶剂瓶",
+            "children": [],
+            "parent": "DissolveTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "water",
+                        "volume": 1500.0,
+                        "concentration": 100.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethanol",
+            "name": "乙醇溶剂瓶",
+            "children": [],
+            "parent": "DissolveTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "ethanol",
+                        "volume": 1500.0,
+                        "concentration": 99.5
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_dmso",
+            "name": "DMSO溶剂瓶",
+            "children": [],
+            "parent": "DissolveTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "dmso",
+                        "volume": 800.0,
+                        "concentration": 99.9
+                    }
+                ]
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "DissolveTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "solid_sample",
+                        "volume": 10.0,
+                        "concentration": 100.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_sample",
+            "name": "样品瓶",
+            "children": [],
+            "parent": "DissolveTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 1000,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_buffer",
+            "name": "缓冲液瓶",
+            "children": [],
+            "parent": "DissolveTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 850,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "buffer",
+                        "volume": 1000.0,
+                        "concentration": 10.0
+                    }
+                ]
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_water",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "1",
+                "flask_water": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_ethanol",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "2",
+                "flask_ethanol": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_dmso",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "3",
+                "flask_dmso": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "4",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "5",
+                "flask_sample": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_buffer",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "6",
+                "flask_buffer": "top"
+            }
+        },
+        {
+            "source": "heatchill_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "heatchill_1": "heating_element",
+                "reactor": "bottom"
+            }
+        },
+        {
+            "source": "heatchill_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "heatchill_1": "heating_element",
+                "flask_sample": "bottom"
+            }
+        },
+        {
+            "source": "stirrer_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "stirrer_1": "stir_rod",
+                "reactor": "center"
+            }
+        },
+        {
+            "source": "stirrer_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "stirrer_1": "stir_rod",
+                "flask_sample": "center"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/filterteststation.json

@@ -0,0 +1,270 @@
+{
+    "nodes": [
+        {
+            "id": "FilterTestStation",
+            "name": "过滤器测试工作站",
+            "children": [
+                "pump_add",
+                "flask_sample",
+                "flask_filtrate", 
+                "flask_buffer",
+                "reactor",
+                "stirrer",
+                "filter_1",
+                "flask_air"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["AddProtocol", "PumpTransferProtocol", "CleanProtocol", "FilterProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "pump_add",
+            "name": "pump_add",
+            "children": [],
+            "parent": "FilterTestStation",
+            "type": "device",
+            "class": "virtual_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 25.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "stirrer",
+            "name": "stirrer",
+            "children": [],
+            "parent": "FilterTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 650.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 100.0,
+                "max_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "filter_1",
+            "name": "过滤器",
+            "children": [],
+            "parent": "FilterTestStation",
+            "type": "device",
+            "class": "virtual_filter",
+            "position": {
+                "x": 800,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 100.0,
+                "max_stir_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "flask_sample",
+            "name": "样品瓶",
+            "children": [],
+            "parent": "FilterTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_filtrate",
+            "name": "滤液瓶",
+            "children": [],
+            "parent": "FilterTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_buffer",
+            "name": "缓冲液瓶",
+            "children": [],
+            "parent": "FilterTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "FilterTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 5000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "FilterTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 950,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "stirrer",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "stirrer": "top",
+                "reactor": "bottom"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "pump_add": "outlet",
+                "flask_sample": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_filtrate",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_filtrate": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_buffer",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_buffer": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "pump_add": "outlet",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_air",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_air": "top"
+            }
+        },
+        {
+            "source": "filter_1",
+            "target": "reactor",
+            "type": "logical",
+            "port": {
+                "filter_1": "input",
+                "reactor": "vessel"
+            }
+        },
+        {
+            "source": "filter_1",
+            "target": "flask_sample",
+            "type": "logical",
+            "port": {
+                "filter_1": "input",
+                "flask_sample": "vessel"
+            }
+        },
+        {
+            "source": "filter_1",
+            "target": "flask_filtrate",
+            "type": "logical",
+            "port": {
+                "filter_1": "output",
+                "flask_filtrate": "vessel"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/filterthroughteststation.json

@@ -0,0 +1,388 @@
+{
+    "nodes": [
+        {
+            "id": "FilterThroughTestStation",
+            "name": "过滤通过测试工作站",
+            "children": [
+                "transfer_pump_1",
+                "filter_1",
+                "flask_ethanol",
+                "flask_water",
+                "flask_methanol",
+                "reactor",
+                "collection_flask",
+                "waste_flask",
+                "flask_sample",
+                "flask_celite",
+                "flask_silica"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["FilterThroughProtocol", "TransferProtocol", "FilterProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 50.0,
+                "transfer_rate": 10.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_volume": 0.0,
+                "max_volume": 50.0,
+                "transfer_rate": 10.0,
+                "from_vessel": "",
+                "to_vessel": "",
+                "progress": 0.0,
+                "transferred_volume": 0.0,
+                "current_status": "Ready"
+            }
+        },
+        {
+            "id": "filter_1",
+            "name": "过滤器",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "device",
+            "class": "virtual_filter",
+            "position": {
+                "x": 650.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 100.0,
+                "max_stir_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle",
+                "filter_state": "Ready",
+                "current_temp": 25.0,
+                "target_temp": 25.0,
+                "max_temp": 100.0,
+                "stir_speed": 0.0,
+                "max_stir_speed": 1000.0,
+                "filtered_volume": 0.0,
+                "progress": 0.0,
+                "message": ""
+            }
+        },
+        {
+            "id": "flask_ethanol",
+            "name": "乙醇溶剂瓶",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "ethanol",
+                        "volume": 1500.0,
+                        "concentration": 99.5
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "水溶剂瓶",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "water",
+                        "volume": 1800.0,
+                        "concentration": 100.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇溶剂瓶",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "methanol",
+                        "volume": 800.0,
+                        "concentration": 99.9
+                    }
+                ]
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "crude_product",
+                        "volume": 200.0,
+                        "concentration": 80.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "collection_flask",
+            "name": "收集瓶",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 850,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_flask",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 1000,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_sample",
+            "name": "样品瓶",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 550,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "sample_mixture",
+                        "volume": 100.0,
+                        "concentration": 50.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_celite",
+            "name": "硅藻土容器",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 150,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "celite",
+                        "volume": 50.0,
+                        "concentration": 100.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_silica",
+            "name": "硅胶容器",
+            "children": [],
+            "parent": "FilterThroughTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 300,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "silica",
+                        "volume": 30.0,
+                        "concentration": 100.0
+                    }
+                ]
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_ethanol",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "1",
+                "flask_ethanol": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_water",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "2",
+                "flask_water": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_methanol",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "3",
+                "flask_methanol": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "4",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "collection_flask",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "5",
+                "collection_flask": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "waste_flask",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "6",
+                "waste_flask": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "7",
+                "flask_sample": "top"
+            }
+        },
+        {
+            "source": "filter_1",
+            "target": "collection_flask",
+            "type": "physical",
+            "port": {
+                "filter_1": "filter_element",
+                "collection_flask": "top"
+            }
+        },
+        {
+            "source": "filter_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "filter_1": "filter_element",
+                "reactor": "top"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/heatchillteststation.json

@@ -0,0 +1,262 @@
+{
+    "nodes": [
+        {
+            "id": "HeatChillTestStation",
+            "name": "加热冷却测试工作站",
+            "children": [
+                "pump_add",
+                "flask_sample",
+                "flask_buffer1", 
+                "flask_buffer2",
+                "reactor",
+                "stirrer",
+                "heatchill_1",
+                "flask_air"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["AddProtocol", "PumpTransferProtocol", "CleanProtocol", "HeatChillProtocol", "HeatChillStartProtocol", "HeatChillStopProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "pump_add",
+            "name": "pump_add",
+            "children": [],
+            "parent": "HeatChillTestStation",
+            "type": "device",
+            "class": "virtual_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 25.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "stirrer",
+            "name": "stirrer",
+            "children": [],
+            "parent": "HeatChillTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 650.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 100.0,
+                "max_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "heatchill_1",
+            "name": "加热冷却器",
+            "children": [],
+            "parent": "HeatChillTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 800,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 200.0,
+                "min_temp": -80.0,
+                "max_stir_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "flask_sample",
+            "name": "样品瓶",
+            "children": [],
+            "parent": "HeatChillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_buffer1",
+            "name": "缓冲液瓶1",
+            "children": [],
+            "parent": "HeatChillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_buffer2",
+            "name": "缓冲液瓶2",
+            "children": [],
+            "parent": "HeatChillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "HeatChillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 5000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "HeatChillTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 950,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "stirrer",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "stirrer": "top",
+                "reactor": "bottom"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "pump_add": "outlet",
+                "flask_sample": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_buffer1",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_buffer1": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_buffer2",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_buffer2": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "pump_add": "outlet",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_air",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_air": "top"
+            }
+        },
+        {
+            "source": "heatchill_1",
+            "target": "reactor",
+            "type": "logical",
+            "port": {
+                "heatchill_1": "heating_element",
+                "reactor": "vessel"
+            }
+        },
+        {
+            "source": "heatchill_1",
+            "target": "flask_sample",
+            "type": "logical",
+            "port": {
+                "heatchill_1": "heating_element",
+                "flask_sample": "vessel"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/runcolumnteststation.json

@@ -0,0 +1,412 @@
+{
+    "nodes": [
+        {
+            "id": "RunColumnTestStation",
+            "name": "柱层析测试工作站",
+            "children": [
+                "transfer_pump_1",
+                "column_1",
+                "flask_sample",
+                "flask_hexane",
+                "flask_ethyl_acetate",
+                "flask_methanol",
+                "collection_flask_1",
+                "collection_flask_2",
+                "collection_flask_3",
+                "waste_flask",
+                "reactor"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["RunColumnProtocol", "TransferProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 50.0,
+                "transfer_rate": 10.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_volume": 0.0,
+                "max_volume": 50.0,
+                "transfer_rate": 10.0,
+                "from_vessel": "",
+                "to_vessel": "",
+                "progress": 0.0,
+                "transferred_volume": 0.0,
+                "current_status": "Ready"
+            }
+        },
+        {
+            "id": "column_1",
+            "name": "柱层析设备",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "device",
+            "class": "virtual_column",
+            "position": {
+                "x": 650.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_flow_rate": 5.0,
+                "column_length": 30.0,
+                "column_diameter": 2.5
+            },
+            "data": {
+                "status": "Idle",
+                "column_state": "Ready",
+                "current_flow_rate": 0.0,
+                "max_flow_rate": 5.0,
+                "column_length": 30.0,
+                "column_diameter": 2.5,
+                "processed_volume": 0.0,
+                "progress": 0.0,
+                "current_status": "Ready"
+            }
+        },
+        {
+            "id": "flask_sample",
+            "name": "样品瓶",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "crude_mixture",
+                        "volume": 200.0,
+                        "concentration": 70.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_hexane",
+            "name": "正己烷洗脱剂",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "hexane",
+                        "volume": 1500.0,
+                        "concentration": 99.8
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_ethyl_acetate",
+            "name": "乙酸乙酯洗脱剂",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "ethyl_acetate",
+                        "volume": 1500.0,
+                        "concentration": 99.5
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇洗脱剂",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 550,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "methanol",
+                        "volume": 800.0,
+                        "concentration": 99.9
+                    }
+                ]
+            }
+        },
+        {
+            "id": "collection_flask_1",
+            "name": "收集瓶1",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 750,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_flask_2",
+            "name": "收集瓶2",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 900,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "collection_flask_3",
+            "name": "收集瓶3",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 1050,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_flask",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 1200,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "RunColumnTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "reaction_mixture",
+                        "volume": 300.0,
+                        "concentration": 85.0
+                    }
+                ]
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "1",
+                "flask_sample": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_hexane",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "2",
+                "flask_hexane": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_ethyl_acetate",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "3",
+                "flask_ethyl_acetate": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_methanol",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "4",
+                "flask_methanol": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "column_1",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "5",
+                "column_1": "inlet"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "collection_flask_1",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "6",
+                "collection_flask_1": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "collection_flask_2",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "7",
+                "collection_flask_2": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "collection_flask_3",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "8",
+                "collection_flask_3": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "waste_flask",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "9",
+                "waste_flask": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "10",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "column_1",
+            "target": "collection_flask_1",
+            "type": "physical",
+            "port": {
+                "column_1": "outlet",
+                "collection_flask_1": "top"
+            }
+        },
+        {
+            "source": "column_1",
+            "target": "collection_flask_2",
+            "type": "physical",
+            "port": {
+                "column_1": "outlet",
+                "collection_flask_2": "top"
+            }
+        },
+        {
+            "source": "column_1",
+            "target": "collection_flask_3",
+            "type": "physical",
+            "port": {
+                "column_1": "outlet",
+                "collection_flask_3": "top"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/stirteststation.json

@@ -0,0 +1,250 @@
+{
+    "nodes": [
+        {
+            "id": "StirTestStation",
+            "name": "搅拌测试工作站",
+            "children": [
+                "pump_add",
+                "flask_sample",
+                "flask_buffer1", 
+                "flask_buffer2",
+                "reactor",
+                "stirrer",
+                "flask_waste",
+                "flask_air"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["AddProtocol", "PumpTransferProtocol", "CleanProtocol", "StirProtocol", "StartStirProtocol", "StopStirProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "pump_add",
+            "name": "添加泵",
+            "children": [],
+            "parent": "StirTestStation",
+            "type": "device",
+            "class": "virtual_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 25.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "stirrer",
+            "name": "搅拌器",
+            "children": [],
+            "parent": "StirTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 650.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 100.0,
+                "max_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "flask_sample",
+            "name": "样品瓶",
+            "children": [],
+            "parent": "StirTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_buffer1",
+            "name": "缓冲液瓶1",
+            "children": [],
+            "parent": "StirTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_buffer2",
+            "name": "缓冲液瓶2",
+            "children": [],
+            "parent": "StirTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "StirTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 5000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_waste",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "StirTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 850,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 3000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_air",
+            "name": "空气瓶",
+            "children": [],
+            "parent": "StirTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 950,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "stirrer",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "stirrer": "top",
+                "reactor": "bottom"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_sample": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_buffer1",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_buffer1": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_buffer2",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_buffer2": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "pump_add": "outlet",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_waste",
+            "type": "physical",
+            "port": {
+                "pump_add": "outlet",
+                "flask_waste": "top"
+            }
+        },
+        {
+            "source": "pump_add",
+            "target": "flask_air",
+            "type": "physical",
+            "port": {
+                "pump_add": "inlet",
+                "flask_air": "top"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/transferteststation.json

@@ -0,0 +1,249 @@
+{
+    "nodes": [
+        {
+            "id": "TransferTestStation",
+            "name": "液体转移测试工作站",
+            "children": [
+                "transfer_pump",
+                "flask_source1",
+                "flask_source2",
+                "flask_target1",
+                "flask_target2",
+                "reactor",
+                "flask_waste",
+                "flask_rinsing"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["TransferProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump",
+            "name": "转移泵",
+            "children": [],
+            "parent": "TransferTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 50.0,
+                "transfer_rate": 5.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "flask_source1",
+            "name": "源容器1",
+            "children": [],
+            "parent": "TransferTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_source2",
+            "name": "源容器2",
+            "children": [],
+            "parent": "TransferTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_target1",
+            "name": "目标容器1",
+            "children": [],
+            "parent": "TransferTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_target2",
+            "name": "目标容器2",
+            "children": [],
+            "parent": "TransferTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 550,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "TransferTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_waste",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "TransferTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 850,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_rinsing",
+            "name": "冲洗液瓶",
+            "children": [],
+            "parent": "TransferTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 950,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "transfer_pump",
+            "target": "flask_source1",
+            "type": "physical",
+            "port": {
+                "transfer_pump": "inlet",
+                "flask_source1": "top"
+            }
+        },
+        {
+            "source": "transfer_pump",
+            "target": "flask_source2",
+            "type": "physical",
+            "port": {
+                "transfer_pump": "inlet",
+                "flask_source2": "top"
+            }
+        },
+        {
+            "source": "transfer_pump",
+            "target": "flask_target1",
+            "type": "physical",
+            "port": {
+                "transfer_pump": "outlet",
+                "flask_target1": "top"
+            }
+        },
+        {
+            "source": "transfer_pump",
+            "target": "flask_target2",
+            "type": "physical",
+            "port": {
+                "transfer_pump": "outlet",
+                "flask_target2": "top"
+            }
+        },
+        {
+            "source": "transfer_pump",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "transfer_pump": "outlet",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "transfer_pump",
+            "target": "flask_waste",
+            "type": "physical",
+            "port": {
+                "transfer_pump": "outlet",
+                "flask_waste": "top"
+            }
+        },
+        {
+            "source": "transfer_pump",
+            "target": "flask_rinsing",
+            "type": "physical",
+            "port": {
+                "transfer_pump": "inlet",
+                "flask_rinsing": "top"
+            }
+        }
+    ]
+}

test/experiments/mock_protocol/washsolidteststation.json

@@ -0,0 +1,494 @@
+{
+    "nodes": [
+        {
+            "id": "WashSolidTestStation",
+            "name": "固体清洗测试工作站",
+            "children": [
+                "transfer_pump_1",
+                "heatchill_1",
+                "stirrer_1",
+                "filter_1",
+                "flask_ethanol",
+                "flask_water",
+                "flask_acetone",
+                "flask_methanol",
+                "reactor",
+                "collection_flask",
+                "waste_flask",
+                "flask_sample",
+                "filtrate_flask"
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "workstation",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "protocol_type": ["WashSolidProtocol", "TransferProtocol", "FilterProtocol", "HeatChillProtocol", "StirProtocol"]
+            },
+            "data": {}
+        },
+        {
+            "id": "transfer_pump_1",
+            "name": "转移泵",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "device",
+            "class": "virtual_transfer_pump",
+            "position": {
+                "x": 520.6111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_volume": 50.0,
+                "transfer_rate": 10.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_volume": 0.0,
+                "max_volume": 50.0,
+                "transfer_rate": 10.0,
+                "from_vessel": "",
+                "to_vessel": "",
+                "progress": 0.0,
+                "transferred_volume": 0.0,
+                "current_status": "Ready"
+            }
+        },
+        {
+            "id": "heatchill_1",
+            "name": "加热冷却器",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "device",
+            "class": "virtual_heatchill",
+            "position": {
+                "x": 650.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 150.0,
+                "min_temp": -20.0
+            },
+            "data": {
+                "status": "Idle",
+                "current_temp": 25.0,
+                "target_temp": 25.0,
+                "vessel": "",
+                "purpose": "",
+                "progress": 0.0,
+                "current_status": "Ready"
+            }
+        },
+        {
+            "id": "stirrer_1",
+            "name": "搅拌器",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "device",
+            "class": "virtual_stirrer",
+            "position": {
+                "x": 750.1111111111111,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle"
+            }
+        },
+        {
+            "id": "filter_1",
+            "name": "过滤器",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "device",
+            "class": "virtual_filter",
+            "position": {
+                "x": 850.1111111111111,
+                "y": 478,
+                "z": 0
+            },
+            "config": {
+                "port": "VIRTUAL",
+                "max_temp": 100.0,
+                "max_stir_speed": 1000.0
+            },
+            "data": {
+                "status": "Idle",
+                "filter_state": "Ready",
+                "current_temp": 25.0,
+                "target_temp": 25.0,
+                "max_temp": 100.0,
+                "stir_speed": 0.0,
+                "max_stir_speed": 1000.0,
+                "filtered_volume": 0.0,
+                "progress": 0.0,
+                "message": ""
+            }
+        },
+        {
+            "id": "flask_ethanol",
+            "name": "乙醇清洗剂",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 100,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "ethanol",
+                        "volume": 1500.0,
+                        "concentration": 99.5
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_water",
+            "name": "水清洗剂",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 250,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "water",
+                        "volume": 1800.0,
+                        "concentration": 100.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_acetone",
+            "name": "丙酮清洗剂",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 400,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "acetone",
+                        "volume": 800.0,
+                        "concentration": 99.8
+                    }
+                ]
+            }
+        },
+        {
+            "id": "flask_methanol",
+            "name": "甲醇清洗剂",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 550,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "methanol",
+                        "volume": 800.0,
+                        "concentration": 99.9
+                    }
+                ]
+            }
+        },
+        {
+            "id": "reactor",
+            "name": "反应器",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 698.1111111111111,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "solid_product",
+                        "volume": 50.0,
+                        "concentration": 100.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "collection_flask",
+            "name": "收集瓶",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 850,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "waste_flask",
+            "name": "废液瓶",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 1000,
+                "y": 428,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 2000.0
+            },
+            "data": {
+                "liquid": []
+            }
+        },
+        {
+            "id": "flask_sample",
+            "name": "样品瓶",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 1150,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 500.0
+            },
+            "data": {
+                "liquid": [
+                    {
+                        "name": "crude_solid",
+                        "volume": 30.0,
+                        "concentration": 80.0
+                    }
+                ]
+            }
+        },
+        {
+            "id": "filtrate_flask",
+            "name": "滤液收集瓶",
+            "children": [],
+            "parent": "WashSolidTestStation",
+            "type": "container",
+            "class": null,
+            "position": {
+                "x": 1000,
+                "y": 300,
+                "z": 0
+            },
+            "config": {
+                "max_volume": 1500.0
+            },
+            "data": {
+                "liquid": []
+            }
+        }
+    ],
+    "links": [
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_ethanol",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "1",
+                "flask_ethanol": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_water",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "2",
+                "flask_water": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_acetone",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "3",
+                "flask_acetone": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_methanol",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "4",
+                "flask_methanol": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "5",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "collection_flask",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "6",
+                "collection_flask": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "waste_flask",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "7",
+                "waste_flask": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "8",
+                "flask_sample": "top"
+            }
+        },
+        {
+            "source": "transfer_pump_1",
+            "target": "filtrate_flask",
+            "type": "physical",
+            "port": {
+                "transfer_pump_1": "9",
+                "filtrate_flask": "top"
+            }
+        },
+        {
+            "source": "heatchill_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "heatchill_1": "heating_element",
+                "reactor": "bottom"
+            }
+        },
+        {
+            "source": "heatchill_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "heatchill_1": "heating_element",
+                "flask_sample": "bottom"
+            }
+        },
+        {
+            "source": "stirrer_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "stirrer_1": "stir_rod",
+                "reactor": "center"
+            }
+        },
+        {
+            "source": "stirrer_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "stirrer_1": "stir_rod",
+                "flask_sample": "center"
+            }
+        },
+        {
+            "source": "filter_1",
+            "target": "reactor",
+            "type": "physical",
+            "port": {
+                "filter_1": "filter_element",
+                "reactor": "top"
+            }
+        },
+        {
+            "source": "filter_1",
+            "target": "flask_sample",
+            "type": "physical",
+            "port": {
+                "filter_1": "filter_element",
+                "flask_sample": "top"
+            }
+        },
+        {
+            "source": "filter_1",
+            "target": "filtrate_flask",
+            "type": "physical",
+            "port": {
+                "filter_1": "filter_element",
+                "filtrate_flask": "top"
+            }
+        }
+    ]
+}

test/experiments/mock_reactor.json

@@ -30,14 +30,17 @@
             "children": [],
             "parent": "ReactorX",
             "type": "container",
-            "class": null,
+            "class": "container",
             "position": {
                 "x": 698.1111111111111,
                 "y": 428,
                 "z": 0
             },
             "config": {
-                "max_volume": 5000.0
+                "max_volume": 5000.0,
+                "size_x": 200.0,
+                "size_y": 200.0,
+                "size_z": 200.0
             },
             "data": {
                 "liquid": [
@@ -71,7 +74,7 @@
             "type": "device",
             "class": "solenoid_valve.mock",
             "position": {
-                "x": 620.6111111111111,
+                "x": 780,
                 "y": 171,
                 "z": 0
             },
@@ -89,7 +92,7 @@
             "type": "device",
             "class": "vacuum_pump.mock",
             "position": {
-                "x": 620.6111111111111,
+                "x": 500,
                 "y": 171,
                 "z": 0
             },
@@ -107,7 +110,7 @@
             "type": "device",
             "class": "gas_source.mock",
             "position": {
-                "x": 620.6111111111111,
+                "x": 900,
                 "y": 171,
                 "z": 0
             },
@@ -119,39 +122,39 @@
     ],
     "links": [
         {
-            "source": "reactor",
-            "target": "vacuum_valve",
-            "type": "physical",
+            "source": "vacuum_valve",
+            "target": "reactor",
+            "type": "fluid",
             "port": {
                 "reactor": "top",
-                "vacuum_valve": "1"
+                "vacuum_valve": "out"
             }
         },
         {
-            "source": "reactor",
-            "target": "gas_valve",
-            "type": "physical",
+            "source": "gas_valve",
+            "target": "reactor",
+            "type": "fluid",
             "port": {
                 "reactor": "top",
-                "gas_valve": "1"
+                "gas_valve": "out"
             }
         },
         {
             "source": "vacuum_pump",
             "target": "vacuum_valve",
-            "type": "physical",
+            "type": "fluid",
             "port": {
                 "vacuum_pump": "out",
-                "vacuum_valve": "0"
+                "vacuum_valve": "in"
             }
         },
         {
             "source": "gas_source",
             "target": "gas_valve",
-            "type": "physical",
+            "type": "fluid",
             "port": {
                 "gas_source": "out",
-                "gas_valve": "0"
+                "gas_valve": "in"
             }
         }
     ]

test/experiments/plr_test.json

@@ -6679,8 +6679,7 @@
                 "plate_well_11_3",
                 "plate_well_11_4",
                 "plate_well_11_5",
-                "plate_well_11_6",
-                "plate_well_11_7"
+                "plate_well_11_6"
             ],
             "parent": "deck",
             "type": "device",
@@ -10508,45 +10507,6 @@
                 "pending_liquids": [],
                 "liquid_history": []
             }
-        },
-        {
-            "id": "plate_well_11_7",
-            "name": "plate_well_11_7",
-            "sample_id": null,
-            "children": [],
-            "parent": "plate",
-            "type": "device",
-            "class": "",
-            "position": {
-                "x": 109.87,
-                "y": 7.77,
-                "z": 3.03
-            },
-            "config": {
-                "type": "Well",
-                "size_x": 6.86,
-                "size_y": 6.86,
-                "size_z": 10.67,
-                "rotation": {
-                    "x": 0,
-                    "y": 0,
-                    "z": 0,
-                    "type": "Rotation"
-                },
-                "category": "well",
-                "model": null,
-                "max_volume": 360,
-                "material_z_thickness": 0.5,
-                "compute_volume_from_height": null,
-                "compute_height_from_volume": null,
-                "bottom_type": "flat",
-                "cross_section_type": "circle"
-            },
-            "data": {
-                "liquids": [],
-                "pending_liquids": [],
-                "liquid_history": []
-            }
         }
     ],
     "links": []

test/experiments/test.json

@@ -4,13 +4,14 @@
             "id": "Gripper1",
             "name": "假夹爪",
             "children": [
+                "Plate1"
             ],
             "parent": null,
             "type": "device",
             "class": "gripper.mock",
             "position": {
-                "x": 620.6111111111111,
-                "y": 171,
+                "x": 0,
+                "y": 0,
                 "z": 0
             },
             "config": {
@@ -23,18 +24,120 @@
             "name": "Plate1",
             "children": [
             ],
-            "parent": null,
+            "parent": "Gripper1",
             "type": "plate",
-            "class": "nest_96_wellplate_2ml_deep",
+            "class": "nest_96_wellplate_100ul_pcr_full_skirt",
             "position": {
-                "x": 620.6111111111111,
-                "y": 171,
-                "z": 0
+                "x": 0,
+                "y": 0,
+                "z": 69
             },
             "config": {
             },
             "data": {
             }
+        },
+        {
+            "id": "ot_joint_publisher",
+            "name": "ot_joint_publisher",
+            "sample_id": null,
+            "children": [
+                
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "lh_joint_publisher",
+            "position": {
+                "x": 0,
+                "y": 0,
+                "z": 0
+            },
+            "config": {
+                "lh_id":"deck",
+                "joint_config":
+                {
+                    "joint_names":[
+                        "first_joint",
+                        "second_joint",
+                        "third_joint",
+                        "fourth_joint"
+                    ],
+                    "y":{
+                        "first_joint":{
+                        "factor":-1,
+                        "offset":0.0
+                        }
+                    },
+                    "x":{
+                        "second_joint":{
+                        "factor":-1,
+                        "offset":0.0
+                        }
+                    },
+                    "z":{
+                        "third_joint":{
+                        "factor":1,
+                        "offset":0.0
+                        },
+                        "fourth_joint":{
+                        "factor":1,
+                        "offset":0.0
+                        }
+                    }
+                }
+            },
+            "data": {}
+        },
+        {
+            "id": "ot_joint_publisher",
+            "name": "ot_joint_publisher",
+            "sample_id": null,
+            "children": [
+                
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "lh_joint_publisher",
+            "position": {
+                "x": 0,
+                "y": 0,
+                "z": 0
+            },
+            "config": {
+                "lh_id":"deck",
+                "joint_config":
+                {
+                    "joint_names":[
+                        "first_joint",
+                        "second_joint",
+                        "third_joint",
+                        "fourth_joint"
+                    ],
+                    "y":{
+                        "first_joint":{
+                        "factor":-1,
+                        "offset":0.0
+                        }
+                    },
+                    "x":{
+                        "second_joint":{
+                        "factor":-1,
+                        "offset":0.0
+                        }
+                    },
+                    "z":{
+                        "third_joint":{
+                        "factor":1,
+                        "offset":0.0
+                        },
+                        "fourth_joint":{
+                        "factor":1,
+                        "offset":0.0
+                        }
+                    }
+                }
+            },
+            "data": {}
         }
     ],
     "links": [

test/experiments/test_copy.json

@@ -0,0 +1,135 @@
+{
+    "nodes": [
+        {
+            "id": "PLR_STATION",
+            "name": "PLR_LH_TEST",
+            "parent": null,
+            "type": "device",
+            "class": "liquid_handler",
+            "position": {
+                "x": 620.6111111111111,
+                "y": 171,
+                "z": 0
+            },
+            "config": {
+                "data": {
+                    "children": [
+                        {
+                            "_resource_child_name": "deck",
+                            "_resource_type": "pylabrobot.resources.opentrons.deck:OTDeck"
+                        }
+                    ],
+                    "backend": {
+                        "type": "LiquidHandlerRvizBackend"
+                    }
+                }
+            },
+            "data": {},
+            "children": [
+                "deck"
+            ]
+        },
+        {
+            "id": "deck",
+            "name": "deck",
+            "sample_id": null,
+            "children": [
+                "teaching_carrier"
+            ],
+            "parent": "PLR_STATION",
+            "type": "deck",
+            "class": "OTDeck",
+            "position": {
+                "x": 0,
+                "y": 0,
+                "z": 0
+            },
+            "config": {
+                "type": "OTDeck",
+                "with_trash": false,
+                "rotation": {
+                    "x": 0,
+                    "y": 0,
+                    "z": 0,
+                    "type": "Rotation"
+                }
+            },
+            "data": {}
+        },
+
+        {
+            "id": "teaching_carrier",
+            "name": "teaching_carrier",
+            "sample_id": null,
+            "children": [
+                "teaching_carrier_A1"
+            ],
+            "parent": "deck",
+            "type": "plate",
+            "class": "opentrons_96_filtertiprack_1000ul",
+            "position": {
+                "x": 0,
+                "y": 0,
+                "z": 69
+            },
+            "config": {
+                "type": "Resource",
+                "size_x": 127,
+                "size_y": 85,
+                "size_z": 0,
+                "rotation": {
+                    "x": 0,
+                    "y": 0,
+                    "z": 0,
+                    "type": "Rotation"
+                },
+                "category": null,
+                "model": null
+            },
+            "data": {}
+        },
+        {
+            "id": "teaching_carrier_A1",
+            "name": "teaching_carrier_A1",
+            "sample_id": null,
+            "children": [],
+            "parent": "teaching_carrier",
+            "type": "device",
+            "class": "",
+            "position": {
+                "x": 10.87,
+                "y": 70.77,
+                "z": 9.47
+            },
+            "config": {
+                "type": "TipSpot",
+                "size_x": 6.86,
+                "size_y": 6.86,
+                "size_z": 10.67,
+                "rotation": {
+                    "x": 0,
+                    "y": 0,
+                    "z": 0,
+                    "type": "Rotation"
+                },
+                "category": "tip_spot",
+                "model": null,
+                "prototype_tip": {
+                    "type": "Tip",
+                    "total_tip_length": 39.2,
+                    "has_filter": true,
+                    "maximal_volume": 20.0,
+                    "fitting_depth": 3.29
+                }
+            },
+            "data": {
+                "liquids": [],
+                "pending_liquids": [],
+                "liquid_history": []
+            }
+        }
+    ],
+    "links": [
+        
+    ]
+}

test/experiments/test_moveit.json

@@ -0,0 +1,35 @@
+{
+    "nodes": [
+
+        {
+            "id": "benyao",
+            "name": "benyao",
+            "children": [
+            ],
+            "parent": null,
+            "type": "device",
+            "class": "moveit.arm_slider",
+            "position": {
+                "x": 0,
+                "y": 0,
+                "z": 0
+            },
+            "config": {
+                "moveit_type": "arm_slider",
+                "joint_poses": {
+                    "arm": {
+                        "home": [0.0, 0.2, 0.0, 0.0, 0.0],
+                        "pick": [1.2, 0.0, 0.0, 0.0, 0.0]
+                    }
+                },
+                "device_config": {
+                }
+            },
+            "data": {
+            }
+        }
+    ],
+    "links": [
+        
+    ]
+}

unilabos-linux-64.yaml

@@ -48,14 +48,19 @@ dependencies:
   - ros-humble-ros2-control
   - ros-humble-robot-state-publisher
   - ros-humble-joint-state-publisher
-  # web
+  # web and visualization
   - ros-humble-rosbridge-server
+  - ros-humble-cv-bridge
   # geometry & motion planning
   - ros-humble-tf2
   - ros-humble-moveit
   - ros-humble-moveit-servo
   # simulation
   - ros-humble-simulation
+  - ros-humble-tf-transformations
+  - transforms3d
   # ros-humble-gazebo-ros // ignored because of the conflict with ign-gazebo
   # ilab equipments
 #  - ros-humble-unilabos-msgs
+  - pip:
+      - paho-mqtt

unilabos-osx-64.yaml

@@ -56,6 +56,10 @@ dependencies:
   # - ros-humble-moveit-servo
   # simulation
   - ros-humble-simulation
+  - ros-humble-tf-transformations
+  - transforms3d
   # ros-humble-gazebo-ros // ignored because of the conflict with ign-gazebo
   # ilab equipments
 #  - ros-humble-unilabos-msgs
+  - pip:
+      - paho-mqtt

unilabos-osx-arm64.yaml

@@ -50,14 +50,19 @@ dependencies:
   - ros-humble-ros2-control
   - ros-humble-robot-state-publisher
   - ros-humble-joint-state-publisher
-  # web
+  # web and visualization
   - ros-humble-rosbridge-server
+  - ros-humble-cv-bridge
   # geometry & motion planning
   - ros-humble-tf2
   - ros-humble-moveit
   - ros-humble-moveit-servo
   # simulation
   - ros-humble-simulation
+  - ros-humble-tf-transformations
+  - transforms3d
   # ros-humble-gazebo-ros // ignored because of the conflict with ign-gazebo
   # ilab equipments
 #  - ros-humble-unilabos-msgs
+  - pip:
+      - paho-mqtt

unilabos-win64.yaml

@@ -6,12 +6,12 @@ channels:
 dependencies:
   # Basics
   - python=3.11.11
-  - compilers
-  - cmake
-  - make
-  - ninja
-  - sphinx
-  - sphinx_rtd_theme
+  # - compilers
+  # - cmake
+  # - make
+  # - ninja
+  # - sphinx
+  # - sphinx_rtd_theme
   # Data Visualization
   - numpy
   - scipy
@@ -23,7 +23,7 @@ dependencies:
   - pyserial
   - pyusb
   - pylibftdi
-  - pymodbus
+  - pymodbus==3.6.9
   - python-can
   - pyvisa
   - opencv
@@ -48,14 +48,26 @@ dependencies:
   - ros-humble-ros2-control
   - ros-humble-robot-state-publisher
   - ros-humble-joint-state-publisher
-  # web
+  # web and visualization
   - ros-humble-rosbridge-server
+  - ros-humble-cv-bridge
   # geometry & motion planning
   - ros-humble-tf2
   - ros-humble-moveit
   - ros-humble-moveit-servo
   # simulation
   - ros-humble-simulation # ignored because of NO python3.11 package in WIN64
+  - ros-humble-tf-transformations
+  - transforms3d
   # ros-humble-gazebo-ros // ignored because of the conflict with ign-gazebo
   # ilab equipments
-#  - ros-humble-unilabos-msgs
+  # ros-humble-unilabos-msgs
+  # driver
+  #- crcmod
+  - pip:
+      - paho-mqtt
+      # driver
+      #- ur-rtde  # set PYTHONUTF8=1
+      #- pyautogui
+      #- pywinauto
+      #- pywinauto_recorder

unilabos/app/backend.py

@@ -7,11 +7,14 @@ from unilabos.utils import logger
 def start_backend(
     backend: str,
     devices_config: dict = {},
-    resources_config: dict = {},
+    resources_config: list = [],
+    resources_edge_config: list = [],
     graph=None,
     controllers_config: dict = {},
     bridges=[],
     without_host: bool = False,
+    visual: str = "None",
+    resources_mesh_config: dict = {},
     **kwargs
 ):
     if backend == "ros":
@@ -29,7 +32,9 @@ def start_backend(
     
     backend_thread = threading.Thread(
         target=main if not without_host else slave,
-        args=(devices_config, resources_config, graph, controllers_config, bridges)
+        args=(devices_config, resources_config, resources_edge_config, graph, controllers_config, bridges, visual, resources_mesh_config),
+        name="backend_thread",
+        daemon=True,
     )
     backend_thread.start()
     logger.info(f"Backend {backend} started.")

unilabos/app/controler.py

@@ -25,10 +25,13 @@ def job_add(req: JobAddReq) -> JobData:
     if req.job_id is None:
         req.job_id = str(uuid.uuid4())
     action_name = req.data["action"]
-    action_kwargs = req.data["action_kwargs"]
-    req.data['action'] = action_name
-    if action_name == "execute_command_from_outer":
-        action_kwargs = {"command": json.dumps(action_kwargs)}
-    print(f"job_add:{req.device_id} {action_name} {action_kwargs}")
-    HostNode.get_instance().send_goal(req.device_id, action_name=action_name, action_kwargs=action_kwargs, goal_uuid=req.job_id)
+    action_type = req.data.get("action_type", "LocalUnknown")
+    action_args = req.data.get("action_kwargs", None)  # 兼容老版本，后续删除
+    if action_args is None:
+        action_args = req.data.get("action_args")
+    else:
+        if "command" in action_args:
+            action_args = action_args["command"]
+    # print(f"job_add:{req.device_id} {action_name} {action_kwargs}")
+    HostNode.get_instance().send_goal(req.device_id, action_type=action_type, action_name=action_name, action_kwargs=action_args, goal_uuid=req.job_id, server_info=req.server_info)
     return JobData(jobId=req.job_id)

unilabos/app/main.py

@@ -1,21 +1,42 @@
 import argparse
+import asyncio
+import json
 import os
 import signal
 import sys
-import json
-import yaml
+import threading
+import time
 from copy import deepcopy
 
+import yaml
+
+from unilabos.resources.graphio import tree_to_list, modify_to_backend_format
+
 # 首先添加项目根目录到路径
 current_dir = os.path.dirname(os.path.abspath(__file__))
-ilabos_dir = os.path.dirname(os.path.dirname(current_dir))
-if ilabos_dir not in sys.path:
-    sys.path.append(ilabos_dir)
+unilabos_dir = os.path.dirname(os.path.dirname(current_dir))
+if unilabos_dir not in sys.path:
+    sys.path.append(unilabos_dir)
 
-from unilabos.config.config import load_config, BasicConfig
+from unilabos.config.config import load_config, BasicConfig, _update_config_from_env
 from unilabos.utils.banner_print import print_status, print_unilab_banner
 
 
+def load_config_from_file(config_path):
+    if config_path is None:
+        config_path = os.environ.get("UNILABOS.BASICCONFIG.CONFIG_PATH", None)
+    if config_path:
+        if not os.path.exists(config_path):
+            print_status(f"配置文件 {config_path} 不存在", "error")
+        elif not config_path.endswith(".py"):
+            print_status(f"配置文件 {config_path} 不是Python文件，必须以.py结尾", "error")
+        else:
+            load_config(config_path)
+    else:
+        print_status(f"启动 UniLab-OS时，配置文件参数未正确传入 --config '{config_path}' 尝试本地配置...", "warning")
+        load_config(config_path)
+
+
 def parse_args():
     """解析命令行参数"""
     parser = argparse.ArgumentParser(description="Start Uni-Lab Edge server.")
@@ -52,13 +73,39 @@ def parse_args():
         action="store_true",
         help="Slave模式下跳过等待host服务",
     )
+    parser.add_argument(
+        "--upload_registry",
+        action="store_true",
+        help="启动unilab时同时报送注册表信息",
+    )
     parser.add_argument(
         "--config",
         type=str,
         default=None,
         help="配置文件路径，支持.py格式的Python配置文件",
     )
-
+    parser.add_argument(
+        "--port",
+        type=int,
+        default=8002,
+        help="信息页web服务的启动端口",
+    )
+    parser.add_argument(
+        "--disable_browser",
+        action='store_true',
+        help="是否在启动时关闭信息页",
+    )
+    parser.add_argument(
+        "--2d_vis",
+        action='store_true',
+        help="是否在pylabrobot实例启动时，同时启动可视化",
+    )
+    parser.add_argument(
+        "--visual",
+        choices=["rviz", "web", "disable"],
+        default="disable",
+        help="选择可视化工具: rviz, web",
+    )
     return parser.parse_args()
 
 
@@ -68,19 +115,18 @@ def main():
     args = parse_args()
     args_dict = vars(args)
 
-    # 加载配置文件 - 这里保持最先加载配置的逻辑
-    if args_dict.get("config"):
-        config_path = args_dict["config"]
-        if not os.path.exists(config_path):
-            print_status(f"配置文件 {config_path} 不存在", "error")
-        elif not config_path.endswith(".py"):
-            print_status(f"配置文件 {config_path} 不是Python文件，必须以.py结尾", "error")
-        else:
-            load_config(config_path)
+    # 加载配置文件，优先加载config，然后从env读取
+    config_path = args_dict.get("config")
+    load_config_from_file(config_path)
 
     # 设置BasicConfig参数
     BasicConfig.is_host_mode = not args_dict.get("without_host", False)
     BasicConfig.slave_no_host = args_dict.get("slave_no_host", False)
+    BasicConfig.upload_registry = args_dict.get("upload_registry", False)
+    machine_name = os.popen("hostname").read().strip()
+    machine_name = "".join([c if c.isalnum() or c == "_" else "_" for c in machine_name])
+    BasicConfig.machine_name = machine_name
+    BasicConfig.vis_2d_enable = args_dict["2d_vis"]
 
     from unilabos.resources.graphio import (
         read_node_link_json,
@@ -92,35 +138,38 @@ def main():
     from unilabos.app.mq import mqtt_client
     from unilabos.registry.registry import build_registry
     from unilabos.app.backend import start_backend
-    from unilabos.web import http_client
-    from unilabos.web import start_server
+    from unilabos.app.web import http_client
+    from unilabos.app.web import start_server
 
     # 显示启动横幅
     print_unilab_banner(args_dict)
 
     # 注册表
     build_registry(args_dict["registry_path"])
-
+    resource_edge_info = []
+    devices_and_resources = None
     if args_dict["graph"] is not None:
         import unilabos.resources.graphio as graph_res
-        graph_res.physical_setup_graph = (
-            read_node_link_json(args_dict["graph"])
-            if args_dict["graph"].endswith(".json")
-            else read_graphml(args_dict["graph"])
-        )
+        if args_dict["graph"].endswith(".json"):
+            graph, data = read_node_link_json(args_dict["graph"])
+        else:
+            graph, data = read_graphml(args_dict["graph"])
+        graph_res.physical_setup_graph = graph
+        resource_edge_info = modify_to_backend_format(data["links"])
         devices_and_resources = dict_from_graph(graph_res.physical_setup_graph)
-        args_dict["resources_config"] = initialize_resources(list(deepcopy(devices_and_resources).values()))
+        # args_dict["resources_config"] = initialize_resources(list(deepcopy(devices_and_resources).values()))
+        args_dict["resources_config"] = list(devices_and_resources.values())
         args_dict["devices_config"] = dict_to_nested_dict(deepcopy(devices_and_resources), devices_only=False)
-        # args_dict["resources_config"] = dict_to_tree(devices_and_resources, devices_only=False)
         args_dict["graph"] = graph_res.physical_setup_graph
     else:
         if args_dict["devices"] is None or args_dict["resources"] is None:
             print_status("Either graph or devices and resources must be provided.", "error")
             sys.exit(1)
         args_dict["devices_config"] = json.load(open(args_dict["devices"], encoding="utf-8"))
-        args_dict["resources_config"] = initialize_resources(
-            list(json.load(open(args_dict["resources"], encoding="utf-8")).values())
-        )
+        # args_dict["resources_config"] = initialize_resources(
+        #     list(json.load(open(args_dict["resources"], encoding="utf-8")).values())
+        # )
+        args_dict["resources_config"] = list(json.load(open(args_dict["resources"], encoding="utf-8")).values())
 
     print_status(f"{len(args_dict['resources_config'])} Resources loaded:", "info")
     for i in args_dict["resources_config"]:
@@ -146,9 +195,30 @@ def main():
         signal.signal(signal.SIGINT, _exit)
         signal.signal(signal.SIGTERM, _exit)
         mqtt_client.start()
-
-    start_backend(**args_dict)
-    start_server()
+    args_dict["resources_mesh_config"] = {}
+    args_dict["resources_edge_config"] = resource_edge_info
+    # web visiualize 2D
+    if args_dict["visual"] != "disable":
+        enable_rviz = args_dict["visual"] == "rviz"
+        if devices_and_resources is not None:
+            from unilabos.device_mesh.resource_visalization import ResourceVisualization  # 此处开启后，logger会变更为INFO，有需要请调整
+            resource_visualization = ResourceVisualization(devices_and_resources, args_dict["resources_config"] ,enable_rviz=enable_rviz)
+            args_dict["resources_mesh_config"] = resource_visualization.resource_model
+            start_backend(**args_dict)
+            server_thread = threading.Thread(target=start_server, kwargs=dict(
+                open_browser=not args_dict["disable_browser"], port=args_dict["port"],
+            ))
+            server_thread.start()
+            asyncio.set_event_loop(asyncio.new_event_loop())
+            resource_visualization.start()
+            while True:
+                time.sleep(1)
+        else:
+            start_backend(**args_dict)
+            start_server(open_browser=not args_dict["disable_browser"], port=args_dict["port"],)
+    else:
+        start_backend(**args_dict)
+        start_server(open_browser=not args_dict["disable_browser"], port=args_dict["port"],)
 
 
 if __name__ == "__main__":

unilabos/app/model.py

@@ -51,8 +51,9 @@ class Resp(BaseModel):
 class JobAddReq(BaseModel):
     device_id: str = Field(examples=["Gripper"], description="device id")
     data: dict = Field(examples=[{"position": 30, "torque": 5, "action": "push_to"}])
-    job_id: str = Field(examples=["sfsfsfeq"], description="goal uuid")
-    node_id: str = Field(examples=["sfsfsfeq"], description="node uuid")
+    job_id: str = Field(examples=["job_id"], description="goal uuid")
+    node_id: str = Field(examples=["node_id"], description="node uuid")
+    server_info: dict = Field(examples=[{"send_timestamp": 1717000000.0}], description="server info")
 
 
 class JobStepFinishReq(BaseModel):

unilabos/app/mq.py

@@ -1,19 +1,25 @@
 import json
 import time
+import traceback
+from typing import Optional
 import uuid
 
 import paho.mqtt.client as mqtt
-import ssl, base64, hmac
+import ssl
+import base64
+import hmac
 from hashlib import sha1
 import tempfile
 import os
 
 from unilabos.config.config import MQConfig
-from unilabos.app.controler import devices, job_add
-from unilabos.app.model import JobAddReq, JobAddResp
+from unilabos.app.controler import job_add
+from unilabos.app.model import JobAddReq
 from unilabos.utils import logger
 from unilabos.utils.type_check import TypeEncoder
 
+from paho.mqtt.enums import CallbackAPIVersion
+
 
 class MQTTClient:
     mqtt_disable = True
@@ -21,7 +27,8 @@ class MQTTClient:
     def __init__(self):
         self.mqtt_disable = not MQConfig.lab_id
         self.client_id = f"{MQConfig.group_id}@@@{MQConfig.lab_id}{uuid.uuid4()}"
-        self.client = mqtt.Client(mqtt.CallbackAPIVersion.VERSION2, client_id=self.client_id, protocol=mqtt.MQTTv5)
+        logger.info("[MQTT] Client_id: " + self.client_id)
+        self.client = mqtt.Client(CallbackAPIVersion.VERSION2, client_id=self.client_id, protocol=mqtt.MQTTv5)
         self._setup_callbacks()
 
     def _setup_callbacks(self):
@@ -31,34 +38,49 @@ class MQTTClient:
         self.client.on_disconnect = self._on_disconnect
 
     def _on_log(self, client, userdata, level, buf):
-        logger.info(f"[MQTT] log: {buf}")
+        # logger.info(f"[MQTT] log: {buf}")
+        pass
 
     def _on_connect(self, client, userdata, flags, rc, properties=None):
         logger.info("[MQTT] Connected with result code " + str(rc))
         client.subscribe(f"labs/{MQConfig.lab_id}/job/start/", 0)
-        isok, data = devices()
-        if not isok:
-            logger.error("[MQTT] on_connect ErrorHostNotInit")
-            return
+        client.subscribe(f"labs/{MQConfig.lab_id}/pong/", 0)
 
-    def _on_message(self, client, userdata, msg):
-        logger.info("[MQTT] on_message<<<< " + msg.topic + " " + str(msg.payload))
+    def _on_message(self, client, userdata, msg) -> None:
+        # logger.info("[MQTT] on_message<<<< " + msg.topic + " " + str(msg.payload))
         try:
             payload_str = msg.payload.decode("utf-8")
             payload_json = json.loads(payload_str)
-            logger.debug(f"Topic: {msg.topic}")
-            logger.debug("Payload:", json.dumps(payload_json, indent=2, ensure_ascii=False))
             if msg.topic == f"labs/{MQConfig.lab_id}/job/start/":
-                logger.debug("job_add", type(payload_json), payload_json)
+                if "data" not in payload_json:
+                    payload_json["data"] = {}
+                if "action" in payload_json:
+                    payload_json["data"]["action"] = payload_json.pop("action")
+                if "action_type" in payload_json:
+                    payload_json["data"]["action_type"] = payload_json.pop("action_type")
+                if "action_args" in payload_json:
+                    payload_json["data"]["action_args"] = payload_json.pop("action_args")
+                if "action_kwargs" in payload_json:
+                    payload_json["data"]["action_kwargs"] = payload_json.pop("action_kwargs")
                 job_req = JobAddReq.model_validate(payload_json)
                 data = job_add(job_req)
-                return JobAddResp(data=data)
+                return
+            elif msg.topic == f"labs/{MQConfig.lab_id}/pong/":
+                # 处理pong响应，通知HostNode
+                from unilabos.ros.nodes.presets.host_node import HostNode
+
+                host_instance = HostNode.get_instance(0)
+                if host_instance:
+                    host_instance.handle_pong_response(payload_json)
+                return
 
         except json.JSONDecodeError as e:
             logger.error(f"[MQTT] JSON 解析错误: {e}")
             logger.error(f"[MQTT] Raw message: {msg.payload}")
+            logger.error(traceback.format_exc())
         except Exception as e:
             logger.error(f"[MQTT] 处理消息时出错: {e}")
+            logger.error(traceback.format_exc())
 
     def _on_disconnect(self, client, userdata, rc, reasonCode=None, properties=None):
         if rc != 0:
@@ -87,7 +109,7 @@ class MQTTClient:
             for temp_file in temp_files:
                 try:
                     os.unlink(temp_file)
-                except:
+                except Exception as e:
                     pass
 
     def start(self):
@@ -142,33 +164,55 @@ class MQTTClient:
         if self.mqtt_disable:
             return
         status = {"data": device_status.get(device_id, {}), "device_id": device_id}
-        address = f"labs/{MQConfig.lab_id}/devices"
+        address = f"labs/{MQConfig.lab_id}/devices/"
         self.client.publish(address, json.dumps(status), qos=2)
-        logger.critical(f"Device status published: address: {address}, {status}")
+        logger.debug(f"Device status published: address: {address}, {status}")
 
-    def publish_job_status(self, feedback_data: dict, job_id: str, status: str):
+    def publish_job_status(self, feedback_data: dict, job_id: str, status: str, return_info: Optional[str] = None):
         if self.mqtt_disable:
             return
-        jobdata = {"job_id": job_id, "data": feedback_data, "status": status}
+        if return_info is None:
+            return_info = "{}"
+        jobdata = {"job_id": job_id, "data": feedback_data, "status": status, "return_info": return_info}
         self.client.publish(f"labs/{MQConfig.lab_id}/job/list/", json.dumps(jobdata), qos=2)
-    
-    def publish_registry(self, device_id: str, device_info: dict):
+
+    def publish_registry(self, device_id: str, device_info: dict, print_debug: bool = True):
         if self.mqtt_disable:
             return
         address = f"labs/{MQConfig.lab_id}/registry/"
-        registry_data = json.dumps({device_id: device_info}, ensure_ascii = False, cls = TypeEncoder)
+        registry_data = json.dumps({device_id: device_info}, ensure_ascii=False, cls=TypeEncoder)
         self.client.publish(address, registry_data, qos=2)
-        logger.debug(f"Registry data published: address: {address}, {registry_data}")
+        if print_debug:
+            logger.debug(f"Registry data published: address: {address}, {registry_data}")
 
     def publish_actions(self, action_id: str, action_info: dict):
         if self.mqtt_disable:
             return
         address = f"labs/{MQConfig.lab_id}/actions/"
-        action_type_name = action_info["title"]
-        action_info["title"] = action_id
-        action_data = json.dumps({action_type_name: action_info}, ensure_ascii=False)
-        self.client.publish(address, action_data, qos=2)
-        logger.debug(f"Action data published: address: {address}, {action_data}")
+        self.client.publish(address, json.dumps(action_info), qos=2)
+        logger.debug(f"Action data published: address: {address}, {action_id}, {action_info}")
+
+    def send_ping(self, ping_id: str, timestamp: float):
+        """发送ping消息到服务端"""
+        if self.mqtt_disable:
+            return
+        address = f"labs/{MQConfig.lab_id}/ping/"
+        ping_data = {"ping_id": ping_id, "client_timestamp": timestamp, "type": "ping"}
+        self.client.publish(address, json.dumps(ping_data), qos=2)
+
+    def setup_pong_subscription(self):
+        """设置pong消息订阅"""
+        if self.mqtt_disable:
+            return
+        pong_topic = f"labs/{MQConfig.lab_id}/pong/"
+        self.client.subscribe(pong_topic, 0)
+        logger.debug(f"Subscribed to pong topic: {pong_topic}")
+
+    def handle_pong(self, pong_data: dict):
+        """处理pong响应（这个方法会在收到pong消息时被调用）"""
+        logger.debug(f"Pong received: {pong_data}")
+        # 这里会被HostNode的ping-pong处理逻辑调用
+        pass
 
 
 mqtt_client = MQTTClient()

unilabos/app/register.py

@@ -0,0 +1,73 @@
+import argparse
+import time
+
+from unilabos.registry.registry import build_registry
+
+from unilabos.app.main import load_config_from_file
+from unilabos.utils.log import logger
+
+
+def register_devices_and_resources(mqtt_client, lab_registry):
+    """
+    注册设备和资源到 MQTT
+    """
+    logger.info("[UniLab Register] 开始注册设备和资源...")
+
+    # 注册设备信息
+    for device_info in lab_registry.obtain_registry_device_info():
+        mqtt_client.publish_registry(device_info["id"], device_info, False)
+        logger.debug(f"[UniLab Register] 注册设备: {device_info['id']}")
+
+    # 注册资源信息
+    for resource_info in lab_registry.obtain_registry_resource_info():
+        mqtt_client.publish_registry(resource_info["id"], resource_info, False)
+        logger.debug(f"[UniLab Register] 注册资源: {resource_info['id']}")
+
+    time.sleep(10)
+
+    logger.info("[UniLab Register] 设备和资源注册完成.")
+
+
+def main():
+    """
+    命令行入口函数
+    """
+    parser = argparse.ArgumentParser(description="注册设备和资源到 MQTT")
+    parser.add_argument(
+        "--registry",
+        type=str,
+        default=None,
+        action="append",
+        help="注册表路径",
+    )
+    parser.add_argument(
+        "--config",
+        type=str,
+        default=None,
+        help="配置文件路径，支持.py格式的Python配置文件",
+    )
+    parser.add_argument(
+        "--complete_registry",
+        action="store_true",
+        default=False,
+        help="是否补全注册表",
+    )
+    args = parser.parse_args()
+
+    # 构建注册表
+    build_registry(args.registry, args.complete_registry)
+    load_config_from_file(args.config)
+
+    from unilabos.app.mq import mqtt_client
+
+    # 连接mqtt
+    mqtt_client.start()
+
+    from unilabos.registry.registry import lab_registry
+
+    # 注册设备和资源
+    register_devices_and_resources(mqtt_client, lab_registry)
+
+
+if __name__ == "__main__":
+    main()

unilabos/app/web/__init__.py

@@ -4,10 +4,10 @@ Web UI 模块
 提供了UniLab系统的Web界面功能
 """
 
-from unilabos.web.pages import setup_web_pages
-from unilabos.web.server import setup_server, start_server
-from unilabos.web.client import http_client
-from unilabos.web.api import setup_api_routes
+from unilabos.app.web.pages import setup_web_pages
+from unilabos.app.web.server import setup_server, start_server
+from unilabos.app.web.client import http_client
+from unilabos.app.web.api import setup_api_routes
 
 __all__ = [
     "setup_web_pages",  # 设置Web页面

unilabos/app/web/api.py

@@ -18,7 +18,7 @@ from unilabos.app.model import (
     JobPreintakeFinishReq,
     JobFinishReq,
 )
-from unilabos.web.utils.host_utils import get_host_node_info
+from unilabos.app.web.utils.host_utils import get_host_node_info
 
 # 创建API路由器
 api = APIRouter()

unilabos/app/web/client.py

@@ -9,6 +9,7 @@ from typing import List, Dict, Any, Optional
 import requests
 from unilabos.utils.log import info
 from unilabos.config.config import MQConfig, HTTPConfig
+from unilabos.utils import logger
 
 
 class HTTPClient:
@@ -29,22 +30,44 @@ class HTTPClient:
             self.auth = MQConfig.lab_id
         info(f"HTTPClient 初始化完成: remote_addr={self.remote_addr}")
 
-    def resource_add(self, resources: List[Dict[str, Any]]) -> requests.Response:
+    def resource_edge_add(self, resources: List[Dict[str, Any]], database_process_later: bool) -> requests.Response:
         """
         添加资源
 
         Args:
             resources: 要添加的资源列表
-
+            database_process_later: 后台处理资源
         Returns:
             Response: API响应对象
         """
         response = requests.post(
-            f"{self.remote_addr}/lab/resource/",
+            f"{self.remote_addr}/lab/resource/edge/batch_create/?database_process_later={1 if database_process_later else 0}",
             json=resources,
             headers={"Authorization": f"lab {self.auth}"},
-            timeout=5,
+            timeout=100,
         )
+        if response.status_code != 200 and response.status_code != 201:
+            logger.error(f"添加物料关系失败: {response.status_code}, {response.text}")
+        return response
+
+    def resource_add(self, resources: List[Dict[str, Any]], database_process_later: bool) -> requests.Response:
+        """
+        添加资源
+
+        Args:
+            resources: 要添加的资源列表
+            database_process_later: 后台处理资源
+        Returns:
+            Response: API响应对象
+        """
+        response = requests.post(
+            f"{self.remote_addr}/lab/resource/?database_process_later={1 if database_process_later else 0}",
+            json=resources,
+            headers={"Authorization": f"lab {self.auth}"},
+            timeout=100,
+        )
+        if response.status_code != 200:
+            logger.error(f"添加物料失败: {response.text}")
         return response
 
     def resource_get(self, id: str, with_children: bool = False) -> Dict[str, Any]:
@@ -59,10 +82,10 @@ class HTTPClient:
             Dict: 返回的资源数据
         """
         response = requests.get(
-            f"{self.remote_addr}/lab/resource/",
+            f"{self.remote_addr}/lab/resource/?edge_format=1",
             params={"id": id, "with_children": with_children},
             headers={"Authorization": f"lab {self.auth}"},
-            timeout=5,
+            timeout=20,
         )
         return response.json()
 
@@ -80,7 +103,7 @@ class HTTPClient:
             f"{self.remote_addr}/lab/resource/batch_delete/",
             params={"id": id},
             headers={"Authorization": f"lab {self.auth}"},
-            timeout=5,
+            timeout=20,
         )
         return response
 
@@ -95,13 +118,37 @@ class HTTPClient:
             Response: API响应对象
         """
         response = requests.patch(
-            f"{self.remote_addr}/lab/resource/batch_update/",
+            f"{self.remote_addr}/lab/resource/batch_update/?edge_format=1",
             json=resources,
             headers={"Authorization": f"lab {self.auth}"},
-            timeout=5,
+            timeout=100,
         )
         return response
 
+    def upload_file(self, file_path: str, scene: str = "models") -> requests.Response:
+        """
+        上传文件到服务器
+
+        使用multipart/form-data格式上传文件，类似curl -F "files=@filepath"
+
+        Args:
+            file_path: 要上传的文件路径
+            scene: 上传场景，可选值为"user"或"models"，默认为"models"
+
+        Returns:
+            Response: API响应对象
+        """
+        with open(file_path, "rb") as file:
+            files = {"files": file}
+            logger.info(f"上传文件: {file_path} 到 {scene}")
+            response = requests.post(
+                f"{self.remote_addr}/api/account/file_upload/{scene}",
+                files=files,
+                headers={"Authorization": f"lab {self.auth}"},
+                timeout=30,  # 上传文件可能需要更长的超时时间
+            )
+        return response
+
 
 # 创建默认客户端实例
 http_client = HTTPClient()

unilabos/app/web/pages.py

@@ -7,6 +7,7 @@ Web页面模块
 import json
 import os
 import sys
+import traceback
 from pathlib import Path
 from typing import Dict
 
@@ -16,13 +17,12 @@ from jinja2 import Environment, FileSystemLoader
 
 from unilabos.config.config import BasicConfig
 from unilabos.registry.registry import lab_registry
-from unilabos.app.mq import mqtt_client
 from unilabos.ros.msgs.message_converter import msg_converter_manager
-from unilabos.utils.log import error
+from unilabos.utils.log import error, debug
 from unilabos.utils.type_check import TypeEncoder
-from unilabos.web.utils.device_utils import get_registry_info
-from unilabos.web.utils.host_utils import get_host_node_info
-from unilabos.web.utils.ros_utils import get_ros_node_info, update_ros_node_info
+from unilabos.app.web.utils.device_utils import get_registry_info
+from unilabos.app.web.utils.host_utils import get_host_node_info
+from unilabos.app.web.utils.ros_utils import get_ros_node_info, update_ros_node_info
 
 # 设置Jinja2模板环境
 template_dir = Path(__file__).parent / "templates"
@@ -92,19 +92,7 @@ def setup_web_pages(router: APIRouter) -> None:
 
             # 获取已加载的设备
             if lab_registry:
-                # 设备类型
-                for device_id, device_info in lab_registry.device_type_registry.items():
-                    msg = {
-                            "id": device_id,
-                            "name": device_info.get("name", "未命名"),
-                            "file_path": device_info.get("file_path", ""),
-                            "class_json": json.dumps(
-                                device_info.get("class", {}), indent=4, ensure_ascii=False, cls=TypeEncoder
-                            ),
-                        }
-                    mqtt_client.publish_registry(device_id, device_info)
-                    devices.append(msg)
-
+                devices = json.loads(json.dumps(lab_registry.obtain_registry_device_info(), ensure_ascii=False, cls=TypeEncoder))
                 # 资源类型
                 for resource_id, resource_info in lab_registry.resource_type_registry.items():
                     resources.append(
@@ -136,6 +124,7 @@ def setup_web_pages(router: APIRouter) -> None:
 
             return html
         except Exception as e:
+            debug(traceback.format_exc())
             error(f"生成状态页面时出错: {str(e)}")
             raise HTTPException(status_code=500, detail=f"Error generating status page: {str(e)}")
 

unilabos/app/web/server.py

@@ -13,8 +13,8 @@ from starlette.responses import Response
 
 from unilabos.utils.fastapi.log_adapter import setup_fastapi_logging
 from unilabos.utils.log import info, error
-from unilabos.web.api import setup_api_routes
-from unilabos.web.pages import setup_web_pages
+from unilabos.app.web.api import setup_api_routes
+from unilabos.app.web.pages import setup_web_pages
 
 # 创建FastAPI应用
 app = FastAPI(

unilabos/app/web/templates/status.html

@@ -96,17 +96,19 @@
             <tr>
                 <th>设备ID</th>
                 <th>命名空间</th>
+                <th>机器名称</th>
                 <th>状态</th>
             </tr>
             {% for device_id, device_info in host_node_info.devices.items() %}
             <tr>
                 <td>{{ device_id }}</td>
                 <td>{{ device_info.namespace }}</td>
+                <td>{{ device_info.machine_name }}</td>
                 <td><span class="status-badge online">{{ "在线" if device_info.is_online else "离线" }}</span></td>
             </tr>
             {% else %}
             <tr>
-                <td colspan="3" class="empty-state">没有发现已管理的设备</td>
+                <td colspan="4" class="empty-state">没有发现已管理的设备</td>
             </tr>
             {% endfor %}
         </table>
@@ -218,6 +220,7 @@
             <th>Device ID</th>
             <th>节点名称</th>
             <th>命名空间</th>
+            <th>机器名称</th>
             <th>状态项</th>
             <th>动作数</th>
         </tr>
@@ -227,6 +230,7 @@
             <td>{{ device_id }}</td>
             <td>{{ device_info.node_name }}</td>
             <td>{{ device_info.namespace }}</td>
+            <td>{{ device_info.machine_name|default("本地") }}</td>
             <td>{{ ros_node_info.device_topics.get(device_id, {})|length }}</td>
             <td>{{ ros_node_info.device_actions.get(device_id, {})|length }} <span class="toggle-indicator">▼</span></td>
         </tr>
@@ -329,8 +333,13 @@
         <tr id="device-info-{{ loop.index }}" class="detail-row" style="display: none;">
             <td colspan="5">
                 <div class="content-full">
-                    <pre>{{ device.class_json }}</pre>
-                    
+                    {% if device.class %}
+                        <pre>{{ device.class | tojson(indent=4) }}</pre>
+                    {% else %}
+                        <!-- 这里可以放占位内容，比如 -->
+                        <pre>// No data</pre>
+                    {% endif %}
+
                     {% if device.is_online %}
                     <div class="status-badge"><span class="online-status">在线</span></div>
                     {% endif %}
@@ -362,7 +371,12 @@
                                     <button class="copy-btn" onclick="copyToClipboard(this.previousElementSibling.textContent, event)">复制</button>
                                     <button class="debug-btn" onclick="toggleDebugInfo(this, event)">调试</button>
                                     <div class="debug-info" style="display:none;">
-                                        <pre>{{ action_info|tojson(indent=2) }}</pre>
+                                        {% if action_info %}
+                                            <pre>{{ action_info | tojson(indent=4) }}</pre>
+                                        {% else %}
+                                            <!-- 这里可以放占位内容，比如 -->
+                                            <pre>// No data</pre>
+                                        {% endif %}
                                     </div>
                                 </div>
                                 

unilabos/app/web/utils/action_utils.py

@@ -8,7 +8,7 @@ import traceback
 from typing import Dict, Any, Type, TypedDict, Optional
 
 from rclpy.action import ActionClient, ActionServer
-from rosidl_parser.definition import UnboundedSequence, NamespacedType, BasicType
+from rosidl_parser.definition import UnboundedSequence, NamespacedType, BasicType, UnboundedString
 
 from unilabos.ros.msgs.message_converter import msg_converter_manager
 from unilabos.ros.nodes.base_device_node import BaseROS2DeviceNode
@@ -65,6 +65,8 @@ def get_yaml_from_goal_type(goal_type) -> str:
     Returns:
         str: 默认Goal参数的YAML格式字符串
     """
+    if isinstance(goal_type, str):
+        return "{}"
     if not goal_type:
         return "{}"
 
@@ -74,7 +76,6 @@ def get_yaml_from_goal_type(goal_type) -> str:
         for ind, slot_info in enumerate(goal_type._fields_and_field_types.items()):
             slot_name, slot_type = slot_info
             type_info = goal_type.SLOT_TYPES[ind]
-            default_value = "unknown"
             if isinstance(type_info, UnboundedSequence):
                 inner_type = type_info.value_type
                 if isinstance(inner_type, NamespacedType):
@@ -83,8 +84,10 @@ def get_yaml_from_goal_type(goal_type) -> str:
                     default_value = [get_ros_msg_instance_as_dict(type_class())]
                 elif isinstance(inner_type, BasicType):
                     default_value = [get_default_value_for_ros_type(inner_type.typename)]
+                elif isinstance(inner_type, UnboundedString):
+                    default_value = [""]
                 else:
-                    default_value = "unknown"
+                    default_value = []
             elif isinstance(type_info, NamespacedType):
                 cls_name = ".".join(type_info.namespaces) + ":" + type_info.name
                 type_class = msg_converter_manager.get_class(cls_name)
@@ -93,6 +96,8 @@ def get_yaml_from_goal_type(goal_type) -> str:
                 default_value = get_ros_msg_instance_as_dict(type_class())
             elif isinstance(type_info, BasicType):
                 default_value = get_default_value_for_ros_type(type_info.typename)
+            elif isinstance(type_info, UnboundedString):
+                default_value = ""
             else:
                 type_class = msg_converter_manager.search_class(slot_type, search_lower=True)
                 if type_class is not None:

unilabos/app/web/utils/host_utils.py

@@ -9,7 +9,7 @@ from typing import Dict, Any
 
 from unilabos.config.config import BasicConfig
 from unilabos.ros.nodes.presets.host_node import HostNode
-from unilabos.web.utils.action_utils import get_action_info
+from unilabos.app.web.utils.action_utils import get_action_info
 
 
 def get_host_node_info() -> Dict[str, Any]:
@@ -30,20 +30,19 @@ def get_host_node_info() -> Dict[str, Any]:
         return host_info
     host_info["available"] = True
     host_info["devices"] = {
-        device_id: {
+        edge_device_id: {
             "namespace": namespace,
-            "is_online": f"{namespace}/{device_id}" in host_node._online_devices,
-            "key": f"{namespace}/{device_id}" if namespace.startswith("/") else f"/{namespace}/{device_id}",
+            "is_online": f"{namespace}/{edge_device_id}" in host_node._online_devices,
+            "key": f"{namespace}/{edge_device_id}" if namespace.startswith("/") else f"/{namespace}/{edge_device_id}",
+            "machine_name": host_node.device_machine_names.get(edge_device_id, "未知"),
         }
-        for device_id, namespace in host_node.devices_names.items()
+        for edge_device_id, namespace in host_node.devices_names.items()
     }
     # 获取已订阅的主题
     host_info["subscribed_topics"] = sorted(list(host_node._subscribed_topics))
     # 获取动作客户端信息
     for action_id, client in host_node._action_clients.items():
-        host_info["action_clients"] = {
-            action_id: get_action_info(client, full_name=action_id)
-        }
+        host_info["action_clients"][action_id] = get_action_info(client, full_name=action_id)
 
     # 获取设备状态
     host_info["device_status"] = host_node.device_status

unilabos/app/web/utils/ros_utils.py

@@ -7,11 +7,12 @@ ROS 工具函数模块
 import traceback
 from typing import Dict, Any
 
-from unilabos.web.utils.action_utils import get_action_info
+from unilabos.app.web.utils.action_utils import get_action_info
 
 # 存储 ROS 节点信息的全局变量
 ros_node_info = {"online_devices": {}, "device_topics": {}, "device_actions": {}}
 
+
 def get_ros_node_info() -> Dict[str, Any]:
     """获取 ROS 节点信息，包括设备节点、发布的状态和动作
 
@@ -35,6 +36,13 @@ def update_ros_node_info() -> Dict[str, Any]:
 
     try:
         from unilabos.ros.nodes.base_device_node import registered_devices
+        from unilabos.ros.nodes.presets.host_node import HostNode
+
+        # 尝试获取主机节点实例
+        host_node = HostNode.get_instance(0)
+        device_machine_names = {}
+        if host_node:
+            device_machine_names = host_node.device_machine_names
 
         for device_id, device_info in registered_devices.items():
             # 设备基本信息
@@ -42,6 +50,7 @@ def update_ros_node_info() -> Dict[str, Any]:
                 "node_name": device_info["node_name"],
                 "namespace": device_info["namespace"],
                 "uuid": device_info["uuid"],
+                "machine_name": device_machine_names.get(device_id, "本地"),
             }
 
             # 设备话题（状态）信息
@@ -55,10 +64,7 @@ def update_ros_node_info() -> Dict[str, Any]:
             }
 
             # 设备动作信息
-            result["device_actions"][device_id] = {
-                k: get_action_info(v, k)
-                for k, v in device_info["actions"].items()
-            }
+            result["device_actions"][device_id] = {k: get_action_info(v, k) for k, v in device_info["actions"].items()}
         # 更新全局变量
         ros_node_info = result
     except Exception as e:

unilabos/compile/__init__.py

@@ -5,15 +5,55 @@ from .separate_protocol import generate_separate_protocol
 from .evaporate_protocol import generate_evaporate_protocol
 from .evacuateandrefill_protocol import generate_evacuateandrefill_protocol
 from .agv_transfer_protocol import generate_agv_transfer_protocol
+from .add_protocol import generate_add_protocol
+from .centrifuge_protocol import generate_centrifuge_protocol
+from .filter_protocol import generate_filter_protocol
+from .heatchill_protocol import (
+    generate_heat_chill_protocol, 
+    generate_heat_chill_start_protocol, 
+    generate_heat_chill_stop_protocol,
+    generate_heat_chill_to_temp_protocol  # 保留导入，但不注册为协议
+)
+from .stir_protocol import generate_stir_protocol, generate_start_stir_protocol, generate_stop_stir_protocol
+from .transfer_protocol import generate_transfer_protocol
+from .clean_vessel_protocol import generate_clean_vessel_protocol
+from .dissolve_protocol import generate_dissolve_protocol
+from .filter_through_protocol import generate_filter_through_protocol
+from .run_column_protocol import generate_run_column_protocol
+from .wash_solid_protocol import generate_wash_solid_protocol
+from .adjustph_protocol import generate_adjust_ph_protocol
+from .reset_handling_protocol import generate_reset_handling_protocol
+from .dry_protocol import generate_dry_protocol
+from .recrystallize_protocol import generate_recrystallize_protocol
+from .hydrogenate_protocol import generate_hydrogenate_protocol
 
 
 # Define a dictionary of protocol generators.
 action_protocol_generators = {
-    PumpTransferProtocol: generate_pump_protocol_with_rinsing,
-    CleanProtocol: generate_clean_protocol,
-    SeparateProtocol: generate_separate_protocol,
-    EvaporateProtocol: generate_evaporate_protocol,
-    EvacuateAndRefillProtocol: generate_evacuateandrefill_protocol,
+    AddProtocol: generate_add_protocol,
     AGVTransferProtocol: generate_agv_transfer_protocol,
-}
-# End Protocols
+    AdjustPHProtocol: generate_adjust_ph_protocol,
+    CentrifugeProtocol: generate_centrifuge_protocol,
+    CleanProtocol: generate_clean_protocol,
+    CleanVesselProtocol: generate_clean_vessel_protocol,
+    DissolveProtocol: generate_dissolve_protocol,
+    DryProtocol: generate_dry_protocol,
+    EvacuateAndRefillProtocol: generate_evacuateandrefill_protocol,
+    EvaporateProtocol: generate_evaporate_protocol,
+    FilterProtocol: generate_filter_protocol,
+    FilterThroughProtocol: generate_filter_through_protocol,
+    HeatChillProtocol: generate_heat_chill_protocol,
+    HeatChillStartProtocol: generate_heat_chill_start_protocol,
+    HeatChillStopProtocol: generate_heat_chill_stop_protocol,
+    HydrogenateProtocol: generate_hydrogenate_protocol,
+    PumpTransferProtocol: generate_pump_protocol_with_rinsing,
+    RecrystallizeProtocol: generate_recrystallize_protocol,
+    ResetHandlingProtocol: generate_reset_handling_protocol,
+    RunColumnProtocol: generate_run_column_protocol,
+    SeparateProtocol: generate_separate_protocol,
+    StartStirProtocol: generate_start_stir_protocol,
+    StirProtocol: generate_stir_protocol,
+    StopStirProtocol: generate_stop_stir_protocol,
+    TransferProtocol: generate_transfer_protocol,
+    WashSolidProtocol: generate_wash_solid_protocol,
+}

unilabos/compile/add_protocol.py

@@ -0,0 +1,627 @@
+import networkx as nx
+from typing import List, Dict, Any
+from .pump_protocol import generate_pump_protocol_with_rinsing
+
+
+def find_reagent_vessel(G: nx.DiGraph, reagent: str) -> str:
+    """
+    根据试剂名称查找对应的试剂瓶，支持多种匹配模式：
+    1. 容器名称匹配（如 flask_DMF, reagent_bottle_1-DMF）
+    2. 容器内液体类型匹配（如 liquid_type: "DMF", name: "ethanol"）
+    3. 试剂名称匹配（如 reagent_name: "DMF", config.reagent: "ethyl_acetate"）
+    
+    Args:
+        G: 网络图
+        reagent: 试剂名称
+    
+    Returns:
+        str: 试剂瓶的vessel ID
+    
+    Raises:
+        ValueError: 如果找不到对应的试剂瓶
+    """
+    print(f"ADD_PROTOCOL: 正在查找试剂 '{reagent}' 的容器...")
+    
+    # 第一步：通过容器名称匹配
+    possible_names = [
+        f"flask_{reagent}",           # flask_DMF, flask_ethanol
+        f"bottle_{reagent}",          # bottle_DMF, bottle_ethanol  
+        f"vessel_{reagent}",          # vessel_DMF, vessel_ethanol
+        f"{reagent}_flask",           # DMF_flask, ethanol_flask
+        f"{reagent}_bottle",          # DMF_bottle, ethanol_bottle
+        f"{reagent}",                 # 直接用试剂名
+        f"reagent_{reagent}",         # reagent_DMF, reagent_ethanol
+        f"reagent_bottle_{reagent}",  # reagent_bottle_DMF
+    ]
+    
+    # 尝试名称匹配
+    for vessel_name in possible_names:
+        if vessel_name in G.nodes():
+            print(f"ADD_PROTOCOL: 通过名称匹配找到容器: {vessel_name}")
+            return vessel_name
+    
+    # 第二步：通过模糊名称匹配（名称中包含试剂名）
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            # 检查节点ID或名称中是否包含试剂名
+            node_name = G.nodes[node_id].get('name', '').lower()
+            if (reagent.lower() in node_id.lower() or 
+                reagent.lower() in node_name):
+                print(f"ADD_PROTOCOL: 通过模糊名称匹配找到容器: {node_id} (名称: {node_name})")
+                return node_id
+    
+    # 第三步：通过液体类型匹配
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            vessel_data = G.nodes[node_id].get('data', {})
+            liquids = vessel_data.get('liquid', [])
+            
+            for liquid in liquids:
+                if isinstance(liquid, dict):
+                    # 支持两种格式的液体类型字段
+                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
+                    reagent_name = vessel_data.get('reagent_name', '')
+                    config_reagent = G.nodes[node_id].get('config', {}).get('reagent', '')
+                    
+                    # 检查多个可能的字段
+                    if (liquid_type.lower() == reagent.lower() or 
+                        reagent_name.lower() == reagent.lower() or
+                        config_reagent.lower() == reagent.lower()):
+                        print(f"ADD_PROTOCOL: 通过液体类型匹配找到容器: {node_id}")
+                        print(f"  - liquid_type: {liquid_type}")
+                        print(f"  - reagent_name: {reagent_name}")
+                        print(f"  - config.reagent: {config_reagent}")
+                        return node_id
+    
+    # 第四步：列出所有可用的容器信息帮助调试
+    available_containers = []
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            vessel_data = G.nodes[node_id].get('data', {})
+            config_data = G.nodes[node_id].get('config', {})
+            liquids = vessel_data.get('liquid', [])
+            
+            container_info = {
+                'id': node_id,
+                'name': G.nodes[node_id].get('name', ''),
+                'liquid_types': [],
+                'reagent_name': vessel_data.get('reagent_name', ''),
+                'config_reagent': config_data.get('reagent', '')
+            }
+            
+            for liquid in liquids:
+                if isinstance(liquid, dict):
+                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
+                    if liquid_type:
+                        container_info['liquid_types'].append(liquid_type)
+            
+            available_containers.append(container_info)
+    
+    print(f"ADD_PROTOCOL: 可用容器列表:")
+    for container in available_containers:
+        print(f"  - {container['id']}: {container['name']}")
+        print(f"    液体类型: {container['liquid_types']}")
+        print(f"    试剂名称: {container['reagent_name']}")
+        print(f"    配置试剂: {container['config_reagent']}")
+    
+    raise ValueError(f"找不到试剂 '{reagent}' 对应的试剂瓶。尝试了名称匹配: {possible_names}")
+
+
+def find_reagent_vessel_by_any_match(G: nx.DiGraph, reagent: str) -> str:
+    """
+    增强版试剂容器查找，支持各种匹配方式的别名函数
+    """
+    return find_reagent_vessel(G, reagent)
+
+
+def get_vessel_reagent_volume(G: nx.DiGraph, vessel: str) -> float:
+    """获取容器中的试剂体积"""
+    if vessel not in G.nodes():
+        return 0.0
+    
+    vessel_data = G.nodes[vessel].get('data', {})
+    liquids = vessel_data.get('liquid', [])
+    
+    total_volume = 0.0
+    for liquid in liquids:
+        if isinstance(liquid, dict):
+            # 支持两种格式：新格式 (name, volume) 和旧格式 (liquid_type, liquid_volume)
+            volume = liquid.get('volume') or liquid.get('liquid_volume', 0.0)
+            total_volume += volume
+    
+    return total_volume
+
+
+def get_vessel_reagent_types(G: nx.DiGraph, vessel: str) -> List[str]:
+    """获取容器中所有试剂的类型"""
+    if vessel not in G.nodes():
+        return []
+    
+    vessel_data = G.nodes[vessel].get('data', {})
+    liquids = vessel_data.get('liquid', [])
+    
+    reagent_types = []
+    for liquid in liquids:
+        if isinstance(liquid, dict):
+            # 支持两种格式的试剂类型字段
+            reagent_type = liquid.get('liquid_type') or liquid.get('name', '')
+            if reagent_type:
+                reagent_types.append(reagent_type)
+    
+    # 同时检查配置中的试剂信息
+    config_reagent = G.nodes[vessel].get('config', {}).get('reagent', '')
+    reagent_name = vessel_data.get('reagent_name', '')
+    
+    if config_reagent and config_reagent not in reagent_types:
+        reagent_types.append(config_reagent)
+    if reagent_name and reagent_name not in reagent_types:
+        reagent_types.append(reagent_name)
+    
+    return reagent_types
+
+
+def find_vessels_by_reagent(G: nx.DiGraph, reagent: str) -> List[str]:
+    """
+    根据试剂类型查找所有匹配的容器
+    返回匹配容器的ID列表
+    """
+    matching_vessels = []
+    
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            # 检查容器名称匹配
+            node_name = G.nodes[node_id].get('name', '').lower()
+            if reagent.lower() in node_id.lower() or reagent.lower() in node_name:
+                matching_vessels.append(node_id)
+                continue
+            
+            # 检查试剂类型匹配
+            vessel_data = G.nodes[node_id].get('data', {})
+            liquids = vessel_data.get('liquid', [])
+            config_data = G.nodes[node_id].get('config', {})
+            
+            # 检查 reagent_name 和 config.reagent
+            reagent_name = vessel_data.get('reagent_name', '').lower()
+            config_reagent = config_data.get('reagent', '').lower()
+            
+            if (reagent.lower() == reagent_name or 
+                reagent.lower() == config_reagent):
+                matching_vessels.append(node_id)
+                continue
+            
+            # 检查液体列表
+            for liquid in liquids:
+                if isinstance(liquid, dict):
+                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
+                    if liquid_type.lower() == reagent.lower():
+                        matching_vessels.append(node_id)
+                        break
+    
+    return matching_vessels
+
+
+def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
+    """
+    查找与指定容器相连的搅拌器
+    
+    Args:
+        G: 网络图
+        vessel: 容器ID
+    
+    Returns:
+        str: 搅拌器ID，如果找不到则返回None
+    """
+    # 查找所有搅拌器节点
+    stirrer_nodes = [node for node in G.nodes() 
+                    if (G.nodes[node].get('class') or '') == 'virtual_stirrer']
+    
+    # 检查哪个搅拌器与目标容器相连
+    for stirrer in stirrer_nodes:
+        if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
+            return stirrer
+    
+    # 如果没有直接连接，返回第一个可用的搅拌器
+    return stirrer_nodes[0] if stirrer_nodes else None
+
+
+def generate_add_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    reagent: str,
+    volume: float,
+    mass: float = 0.0,
+    amount: str = "",
+    time: float = 0.0,
+    stir: bool = False,
+    stir_speed: float = 300.0,
+    viscous: bool = False,
+    purpose: str = "添加试剂"
+) -> List[Dict[str, Any]]:
+    """
+    生成添加试剂的协议序列，支持智能试剂匹配
+    
+    基于pump_protocol的成熟算法，实现试剂添加功能：
+    1. 智能查找试剂瓶（支持名称匹配、液体类型匹配、试剂配置匹配）
+    2. **先启动搅拌，再进行转移** - 确保试剂添加更均匀
+    3. 使用pump_protocol实现液体转移
+    
+    Args:
+        G: 有向图，节点为容器和设备，边为连接关系
+        vessel: 目标容器（要添加试剂的容器）
+        reagent: 试剂名称（用于查找对应的试剂瓶）
+        volume: 要添加的体积 (mL)
+        mass: 要添加的质量 (g) - 暂时未使用，预留接口
+        amount: 其他数量描述
+        time: 添加时间 (s)，如果指定则计算流速
+        stir: 是否启用搅拌
+        stir_speed: 搅拌速度 (RPM)
+        viscous: 是否为粘稠液体
+        purpose: 添加目的描述
+    
+    Returns:
+        List[Dict[str, Any]]: 动作序列
+    
+    Raises:
+        ValueError: 当找不到必要的设备或容器时
+    """
+    action_sequence = []
+    
+    print(f"ADD_PROTOCOL: 开始生成添加试剂协议")
+    print(f"  - 目标容器: {vessel}")
+    print(f"  - 试剂: {reagent}")
+    print(f"  - 体积: {volume} mL")
+    print(f"  - 质量: {mass} g")
+    print(f"  - 搅拌: {stir} (速度: {stir_speed} RPM)")
+    print(f"  - 粘稠: {viscous}")
+    print(f"  - 目的: {purpose}")
+    
+    # 1. 验证目标容器存在
+    if vessel not in G.nodes():
+        raise ValueError(f"目标容器 '{vessel}' 不存在于系统中")
+    
+    # 2. 智能查找试剂瓶
+    try:
+        reagent_vessel = find_reagent_vessel(G, reagent)
+        print(f"ADD_PROTOCOL: 找到试剂容器: {reagent_vessel}")
+    except ValueError as e:
+        raise ValueError(f"无法找到试剂 '{reagent}': {str(e)}")
+    
+    # 3. 验证试剂容器中的试剂体积
+    available_volume = get_vessel_reagent_volume(G, reagent_vessel)
+    print(f"ADD_PROTOCOL: 试剂容器 {reagent_vessel} 中有 {available_volume} mL 试剂")
+    
+    if available_volume < volume:
+        print(f"ADD_PROTOCOL: 警告 - 试剂容器中的试剂不足！需要 {volume} mL，可用 {available_volume} mL")
+    
+    # 4. 验证是否存在从试剂瓶到目标容器的路径
+    try:
+        path = nx.shortest_path(G, source=reagent_vessel, target=vessel)
+        print(f"ADD_PROTOCOL: 找到路径 {reagent_vessel} -> {vessel}: {path}")
+    except nx.NetworkXNoPath:
+        raise ValueError(f"从试剂瓶 '{reagent_vessel}' 到目标容器 '{vessel}' 没有可用路径")
+    
+    # 5. **先启动搅拌** - 关键改进！
+    if stir:
+        try:
+            stirrer_id = find_connected_stirrer(G, vessel)
+            
+            if stirrer_id:
+                print(f"ADD_PROTOCOL: 找到搅拌器 {stirrer_id}，将在添加前启动搅拌")
+                
+                # 先启动搅拌
+                stir_action = {
+                    "device_id": stirrer_id,
+                    "action_name": "start_stir",
+                    "action_kwargs": {
+                        "vessel": vessel,
+                        "stir_speed": stir_speed,
+                        "purpose": f"{purpose}: 启动搅拌，准备添加 {reagent}"
+                    }
+                }
+                
+                action_sequence.append(stir_action)
+                print(f"ADD_PROTOCOL: 已添加搅拌动作，速度 {stir_speed} RPM")
+                
+                # 等待搅拌稳定
+                action_sequence.append({
+                    "action_name": "wait",
+                    "action_kwargs": {"time": 5}
+                })
+            else:
+                print(f"ADD_PROTOCOL: 警告 - 需要搅拌但未找到与容器 {vessel} 相连的搅拌器")
+        
+        except Exception as e:
+            print(f"ADD_PROTOCOL: 搅拌器配置出错: {str(e)}")
+    
+    # 6. 如果指定了体积，执行液体转移
+    if volume > 0:
+        # 6.1 计算流速参数
+        if time > 0:
+            # 根据时间计算流速
+            transfer_flowrate = volume / time
+            flowrate = transfer_flowrate
+        else:
+            # 使用默认流速
+            if viscous:
+                transfer_flowrate = 0.3  # 粘稠液体用较慢速度
+                flowrate = 1.0
+            else:
+                transfer_flowrate = 0.5  # 普通液体默认速度
+                flowrate = 2.5
+        
+        print(f"ADD_PROTOCOL: 准备转移 {volume} mL 从 {reagent_vessel} 到 {vessel}")
+        print(f"ADD_PROTOCOL: 转移流速={transfer_flowrate} mL/s, 注入流速={flowrate} mL/s")
+        
+        # 6.2 使用pump_protocol的核心算法实现液体转移
+        try:
+            pump_actions = generate_pump_protocol_with_rinsing(
+                G=G,
+                from_vessel=reagent_vessel,
+                to_vessel=vessel,
+                volume=volume,
+                amount=amount,
+                time=time,
+                viscous=viscous,
+                rinsing_solvent="",  # 添加试剂通常不需要清洗
+                rinsing_volume=0.0,
+                rinsing_repeats=0,
+                solid=False,
+                flowrate=flowrate,
+                transfer_flowrate=transfer_flowrate
+            )
+            
+            # 添加pump actions到序列中
+            action_sequence.extend(pump_actions)
+            
+        except Exception as e:
+            raise ValueError(f"生成泵协议时出错: {str(e)}")
+    
+    print(f"ADD_PROTOCOL: 生成了 {len(action_sequence)} 个动作")
+    print(f"ADD_PROTOCOL: 添加试剂协议生成完成")
+    
+    return action_sequence
+
+
+def generate_add_protocol_with_cleaning(
+    G: nx.DiGraph,
+    vessel: str,
+    reagent: str,
+    volume: float,
+    mass: float = 0.0,
+    amount: str = "",
+    time: float = 0.0,
+    stir: bool = False,
+    stir_speed: float = 300.0,
+    viscous: bool = False,
+    purpose: str = "添加试剂",
+    cleaning_solvent: str = "air",
+    cleaning_volume: float = 5.0,
+    cleaning_repeats: int = 1
+) -> List[Dict[str, Any]]:
+    """
+    生成带清洗的添加试剂协议，支持智能试剂匹配
+    
+    与普通添加协议的区别是会在添加后进行管道清洗
+    
+    Args:
+        G: 有向图
+        vessel: 目标容器
+        reagent: 试剂名称
+        volume: 添加体积
+        mass: 添加质量（预留）
+        amount: 其他数量描述
+        time: 添加时间
+        stir: 是否搅拌
+        stir_speed: 搅拌速度
+        viscous: 是否粘稠
+        purpose: 添加目的
+        cleaning_solvent: 清洗溶剂（"air"表示空气清洗）
+        cleaning_volume: 清洗体积
+        cleaning_repeats: 清洗重复次数
+    
+    Returns:
+        List[Dict[str, Any]]: 动作序列
+    """
+    action_sequence = []
+    
+    # 1. 智能查找试剂瓶
+    reagent_vessel = find_reagent_vessel(G, reagent)
+    
+    # 2. **先启动搅拌**
+    if stir:
+        stirrer_id = find_connected_stirrer(G, vessel)
+        if stirrer_id:
+            action_sequence.append({
+                "device_id": stirrer_id,
+                "action_name": "start_stir",
+                "action_kwargs": {
+                    "vessel": vessel,
+                    "stir_speed": stir_speed,
+                    "purpose": f"{purpose}: 启动搅拌，准备添加 {reagent}"
+                }
+            })
+            
+            # 等待搅拌稳定
+            action_sequence.append({
+                "action_name": "wait",
+                "action_kwargs": {"time": 5}
+            })
+    
+    # 3. 计算流速
+    if time > 0:
+        transfer_flowrate = volume / time
+        flowrate = transfer_flowrate
+    else:
+        if viscous:
+            transfer_flowrate = 0.3
+            flowrate = 1.0
+        else:
+            transfer_flowrate = 0.5
+            flowrate = 2.5
+    
+    # 4. 使用带清洗的pump_protocol
+    pump_actions = generate_pump_protocol_with_rinsing(
+        G=G,
+        from_vessel=reagent_vessel,
+        to_vessel=vessel,
+        volume=volume,
+        amount=amount,
+        time=time,
+        viscous=viscous,
+        rinsing_solvent=cleaning_solvent,
+        rinsing_volume=cleaning_volume,
+        rinsing_repeats=cleaning_repeats,
+        solid=False,
+        flowrate=flowrate,
+        transfer_flowrate=transfer_flowrate
+    )
+    
+    action_sequence.extend(pump_actions)
+    
+    return action_sequence
+
+
+def generate_sequential_add_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    reagents: List[Dict[str, Any]],
+    stir_between_additions: bool = True,
+    final_stir: bool = True,
+    final_stir_speed: float = 400.0,
+    final_stir_time: float = 300.0
+) -> List[Dict[str, Any]]:
+    """
+    生成连续添加多种试剂的协议，支持智能试剂匹配
+    
+    Args:
+        G: 网络图
+        vessel: 目标容器
+        reagents: 试剂列表，每个元素包含试剂添加参数
+        stir_between_additions: 是否在每次添加之间搅拌
+        final_stir: 是否在所有添加完成后进行最终搅拌
+        final_stir_speed: 最终搅拌速度
+        final_stir_time: 最终搅拌时间
+    
+    Returns:
+        List[Dict[str, Any]]: 完整的动作序列
+    
+    Example:
+        reagents = [
+            {
+                "reagent": "DMF",           # 会匹配 reagent_bottle_1 (reagent_name: "DMF")
+                "volume": 10.0,
+                "viscous": False,
+                "stir_speed": 300.0
+            },
+            {
+                "reagent": "ethyl_acetate", # 会匹配 reagent_bottle_2 (reagent_name: "ethyl_acetate")
+                "volume": 5.0,
+                "viscous": False,
+                "stir_speed": 350.0
+            }
+        ]
+    """
+    action_sequence = []
+    
+    print(f"ADD_PROTOCOL: 开始连续添加 {len(reagents)} 种试剂到容器 {vessel}")
+    
+    for i, reagent_params in enumerate(reagents):
+        reagent_name = reagent_params.get('reagent')
+        print(f"ADD_PROTOCOL: 处理第 {i+1}/{len(reagents)} 个试剂: {reagent_name}")
+        
+        # 生成单个试剂的添加协议
+        add_actions = generate_add_protocol(
+            G=G,
+            vessel=vessel,
+            reagent=reagent_name,
+            volume=reagent_params.get('volume', 0.0),
+            mass=reagent_params.get('mass', 0.0),
+            amount=reagent_params.get('amount', ''),
+            time=reagent_params.get('time', 0.0),
+            stir=stir_between_additions,
+            stir_speed=reagent_params.get('stir_speed', 300.0),
+            viscous=reagent_params.get('viscous', False),
+            purpose=reagent_params.get('purpose', f'添加试剂 {reagent_name} ({i+1}/{len(reagents)})')
+        )
+        
+        action_sequence.extend(add_actions)
+        
+        # 在添加之间加入等待时间
+        if i < len(reagents) - 1:  # 不是最后一个试剂
+            action_sequence.append({
+                "action_name": "wait",
+                "action_kwargs": {"time": 10}  # 试剂混合时间
+            })
+    
+    # 最终搅拌
+    if final_stir:
+        stirrer_id = find_connected_stirrer(G, vessel)
+        if stirrer_id:
+            print(f"ADD_PROTOCOL: 添加最终搅拌动作，速度 {final_stir_speed} RPM，时间 {final_stir_time} 秒")
+            action_sequence.extend([
+                {
+                    "device_id": stirrer_id,
+                    "action_name": "stir",
+                    "action_kwargs": {
+                        "stir_time": final_stir_time,
+                        "stir_speed": final_stir_speed,
+                        "settling_time": 30.0
+                    }
+                }
+            ])
+    
+    print(f"ADD_PROTOCOL: 连续添加协议生成完成，共 {len(action_sequence)} 个动作")
+    return action_sequence
+
+
+# 便捷函数：常用添加方案
+def generate_organic_add_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    organic_reagent: str,
+    volume: float,
+    stir_speed: float = 400.0
+) -> List[Dict[str, Any]]:
+    """有机试剂添加：慢速、搅拌"""
+    return generate_add_protocol(
+        G, vessel, organic_reagent, volume, 0.0, "", 0.0, 
+        True, stir_speed, False, f"添加有机试剂 {organic_reagent}"
+    )
+
+
+def generate_viscous_add_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    viscous_reagent: str,
+    volume: float,
+    addition_time: float = 120.0
+) -> List[Dict[str, Any]]:
+    """粘稠试剂添加：慢速、长时间"""
+    return generate_add_protocol(
+        G, vessel, viscous_reagent, volume, 0.0, "", addition_time, 
+        True, 250.0, True, f"缓慢添加粘稠试剂 {viscous_reagent}"
+    )
+
+
+def generate_solvent_add_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    solvent: str,
+    volume: float
+) -> List[Dict[str, Any]]:
+    """溶剂添加：快速、无需特殊处理"""
+    return generate_add_protocol(
+        G, vessel, solvent, volume, 0.0, "", 0.0, 
+        False, 300.0, False, f"添加溶剂 {solvent}"
+    )
+
+
+# 使用示例和测试函数
+def test_add_protocol():
+    """测试添加协议的示例"""
+    print("=== ADD PROTOCOL 智能匹配测试 ===")
+    print("测试完成")
+
+
+if __name__ == "__main__":
+    test_add_protocol()

unilabos/compile/adjustph_protocol.py

@@ -0,0 +1,411 @@
+import networkx as nx
+from typing import List, Dict, Any
+from .pump_protocol import generate_pump_protocol_with_rinsing
+
+
+def find_acid_base_vessel(G: nx.DiGraph, reagent: str) -> str:
+    """
+    查找酸碱试剂容器，支持多种匹配模式
+    
+    Args:
+        G: 网络图
+        reagent: 试剂名称（如 "hydrochloric acid", "sodium hydroxide"）
+    
+    Returns:
+        str: 试剂容器ID
+    """
+    print(f"ADJUST_PH: 正在查找试剂 '{reagent}' 的容器...")
+    
+    # 常见酸碱试剂的别名映射
+    reagent_aliases = {
+        "hydrochloric acid": ["HCl", "hydrochloric_acid", "hcl", "muriatic_acid"],
+        "sodium hydroxide": ["NaOH", "sodium_hydroxide", "naoh", "caustic_soda"],
+        "sulfuric acid": ["H2SO4", "sulfuric_acid", "h2so4"],
+        "nitric acid": ["HNO3", "nitric_acid", "hno3"],
+        "acetic acid": ["CH3COOH", "acetic_acid", "glacial_acetic_acid"],
+        "ammonia": ["NH3", "ammonium_hydroxide", "nh3"],
+        "potassium hydroxide": ["KOH", "potassium_hydroxide", "koh"]
+    }
+    
+    # 构建搜索名称列表
+    search_names = [reagent.lower()]
+    
+    # 添加别名
+    for base_name, aliases in reagent_aliases.items():
+        if reagent.lower() in base_name.lower() or base_name.lower() in reagent.lower():
+            search_names.extend([alias.lower() for alias in aliases])
+    
+    # 构建可能的容器名称
+    possible_names = []
+    for name in search_names:
+        name_clean = name.replace(" ", "_").replace("-", "_")
+        possible_names.extend([
+            f"flask_{name_clean}",
+            f"bottle_{name_clean}",
+            f"reagent_{name_clean}",
+            f"acid_{name_clean}" if "acid" in name else f"base_{name_clean}",
+            f"{name_clean}_bottle",
+            f"{name_clean}_flask",
+            name_clean
+        ])
+    
+    # 第一步：通过容器名称匹配
+    for vessel_name in possible_names:
+        if vessel_name in G.nodes():
+            print(f"ADJUST_PH: 通过名称匹配找到容器: {vessel_name}")
+            return vessel_name
+    
+    # 第二步：通过模糊匹配
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            node_name = G.nodes[node_id].get('name', '').lower()
+            
+            # 检查是否包含任何搜索名称
+            for search_name in search_names:
+                if search_name in node_id.lower() or search_name in node_name:
+                    print(f"ADJUST_PH: 通过模糊匹配找到容器: {node_id}")
+                    return node_id
+    
+    # 第三步：通过液体类型匹配
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            vessel_data = G.nodes[node_id].get('data', {})
+            liquids = vessel_data.get('liquid', [])
+            
+            for liquid in liquids:
+                if isinstance(liquid, dict):
+                    liquid_type = (liquid.get('liquid_type') or liquid.get('name', '')).lower()
+                    reagent_name = vessel_data.get('reagent_name', '').lower()
+                    
+                    for search_name in search_names:
+                        if search_name in liquid_type or search_name in reagent_name:
+                            print(f"ADJUST_PH: 通过液体类型匹配找到容器: {node_id}")
+                            return node_id
+    
+    # 列出可用容器帮助调试
+    available_containers = []
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            vessel_data = G.nodes[node_id].get('data', {})
+            liquids = vessel_data.get('liquid', [])
+            liquid_types = [liquid.get('liquid_type', '') or liquid.get('name', '') 
+                           for liquid in liquids if isinstance(liquid, dict)]
+            
+            available_containers.append({
+                'id': node_id,
+                'name': G.nodes[node_id].get('name', ''),
+                'liquids': liquid_types,
+                'reagent_name': vessel_data.get('reagent_name', '')
+            })
+    
+    print(f"ADJUST_PH: 可用容器列表:")
+    for container in available_containers:
+        print(f"  - {container['id']}: {container['name']}")
+        print(f"    液体: {container['liquids']}")
+        print(f"    试剂: {container['reagent_name']}")
+    
+    raise ValueError(f"找不到试剂 '{reagent}' 对应的容器。尝试了: {possible_names}")
+
+
+def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
+    """查找与容器相连的搅拌器"""
+    stirrer_nodes = [node for node in G.nodes() 
+                    if (G.nodes[node].get('class') or '') == 'virtual_stirrer']
+    
+    for stirrer in stirrer_nodes:
+        if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
+            return stirrer
+    
+    return stirrer_nodes[0] if stirrer_nodes else None
+
+
+def calculate_reagent_volume(target_ph_value: float, reagent: str, vessel_volume: float = 100.0) -> float:  # 改为 target_ph_value
+    """
+    估算需要的试剂体积来调节pH
+    
+    Args:
+        target_ph_value: 目标pH值  # 改为 target_ph_value
+        reagent: 试剂名称
+        vessel_volume: 容器体积 (mL)
+    
+    Returns:
+        float: 估算的试剂体积 (mL)
+    """
+    # 简化的pH调节体积估算（实际应用中需要更精确的计算）
+    if "acid" in reagent.lower() or "hcl" in reagent.lower():
+        # 酸性试剂：pH越低需要的体积越大
+        if target_ph_value < 3:  # 改为 target_ph_value
+            return vessel_volume * 0.05  # 5%
+        elif target_ph_value < 5:  # 改为 target_ph_value
+            return vessel_volume * 0.02  # 2%
+        else:
+            return vessel_volume * 0.01  # 1%
+    
+    elif "hydroxide" in reagent.lower() or "naoh" in reagent.lower():
+        # 碱性试剂：pH越高需要的体积越大
+        if target_ph_value > 11:  # 改为 target_ph_value
+            return vessel_volume * 0.05  # 5%
+        elif target_ph_value > 9:  # 改为 target_ph_value
+            return vessel_volume * 0.02  # 2%
+        else:
+            return vessel_volume * 0.01  # 1%
+    
+    else:
+        # 未知试剂，使用默认值
+        return vessel_volume * 0.01
+
+
+def generate_adjust_ph_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    ph_value: float,  # 改为 ph_value
+    reagent: str,
+    **kwargs
+) -> List[Dict[str, Any]]:
+    """
+    生成调节pH的协议序列
+    
+    Args:
+        G: 有向图，节点为容器和设备
+        vessel: 目标容器（需要调节pH的容器）
+        ph_value: 目标pH值（从XDL传入）  # 改为 ph_value
+        reagent: 酸碱试剂名称（从XDL传入）
+        **kwargs: 其他可选参数，使用默认值
+    
+    Returns:
+        List[Dict[str, Any]]: 动作序列
+    """
+    action_sequence = []
+    
+    # 从kwargs中获取可选参数，如果没有则使用默认值
+    volume = kwargs.get('volume', 0.0)           # 自动估算体积
+    stir = kwargs.get('stir', True)              # 默认搅拌
+    stir_speed = kwargs.get('stir_speed', 300.0) # 默认搅拌速度
+    stir_time = kwargs.get('stir_time', 60.0)    # 默认搅拌时间
+    settling_time = kwargs.get('settling_time', 30.0)  # 默认平衡时间
+    
+    print(f"ADJUST_PH: 开始生成pH调节协议")
+    print(f"  - 目标容器: {vessel}")
+    print(f"  - 目标pH: {ph_value}")  # 改为 ph_value
+    print(f"  - 试剂: {reagent}")
+    print(f"  - 使用默认参数: 体积=自动估算, 搅拌=True, 搅拌速度=300RPM")
+    
+    # 1. 验证目标容器存在
+    if vessel not in G.nodes():
+        raise ValueError(f"目标容器 '{vessel}' 不存在于系统中")
+    
+    # 2. 查找酸碱试剂容器
+    try:
+        reagent_vessel = find_acid_base_vessel(G, reagent)
+        print(f"ADJUST_PH: 找到试剂容器: {reagent_vessel}")
+    except ValueError as e:
+        raise ValueError(f"无法找到试剂 '{reagent}': {str(e)}")
+    
+    # 3. 如果未指定体积，自动估算
+    if volume <= 0:
+        # 获取目标容器的体积信息
+        vessel_data = G.nodes[vessel].get('data', {})
+        vessel_volume = vessel_data.get('max_volume', 100.0)  # 默认100mL
+        
+        estimated_volume = calculate_reagent_volume(ph_value, reagent, vessel_volume)  # 改为 ph_value
+        volume = estimated_volume
+        print(f"ADJUST_PH: 自动估算试剂体积: {volume:.2f} mL")
+    
+    # 4. 验证路径存在
+    try:
+        path = nx.shortest_path(G, source=reagent_vessel, target=vessel)
+        print(f"ADJUST_PH: 找到路径: {' → '.join(path)}")
+    except nx.NetworkXNoPath:
+        raise ValueError(f"从试剂容器 '{reagent_vessel}' 到目标容器 '{vessel}' 没有可用路径")
+    
+    # 5. 先启动搅拌（如果需要）
+    stirrer_id = None
+    if stir:
+        try:
+            stirrer_id = find_connected_stirrer(G, vessel)
+            
+            if stirrer_id:
+                print(f"ADJUST_PH: 找到搅拌器 {stirrer_id}，启动搅拌")
+                action_sequence.append({
+                    "device_id": stirrer_id,
+                    "action_name": "start_stir",
+                    "action_kwargs": {
+                        "vessel": vessel,
+                        "stir_speed": stir_speed,
+                        "purpose": f"pH调节: 启动搅拌，准备添加 {reagent}"
+                    }
+                })
+                
+                # 等待搅拌稳定
+                action_sequence.append({
+                    "action_name": "wait",
+                    "action_kwargs": {"time": 5}
+                })
+            else:
+                print(f"ADJUST_PH: 警告 - 未找到搅拌器，继续执行")
+        
+        except Exception as e:
+            print(f"ADJUST_PH: 搅拌器配置出错: {str(e)}")
+    
+    # 6. 缓慢添加试剂 - 使用pump_protocol
+    print(f"ADJUST_PH: 开始添加试剂 {volume:.2f} mL")
+    
+    # 计算添加时间（pH调节需要缓慢添加）
+    addition_time = max(30.0, volume * 2.0)  # 至少30秒，每mL需要2秒
+    
+    try:
+        pump_actions = generate_pump_protocol_with_rinsing(
+            G=G,
+            from_vessel=reagent_vessel,
+            to_vessel=vessel,
+            volume=volume,
+            amount="",
+            time=addition_time,
+            viscous=False,
+            rinsing_solvent="",  # pH调节不需要清洗
+            rinsing_volume=0.0,
+            rinsing_repeats=0,
+            solid=False,
+            flowrate=0.5  # 缓慢注入
+        )
+        
+        action_sequence.extend(pump_actions)
+        
+    except Exception as e:
+        raise ValueError(f"生成泵协议时出错: {str(e)}")
+    
+    # 7. 持续搅拌以混合和平衡
+    if stir and stirrer_id:
+        print(f"ADJUST_PH: 持续搅拌 {stir_time} 秒以混合试剂")
+        action_sequence.append({
+            "device_id": stirrer_id,
+            "action_name": "stir",
+            "action_kwargs": {
+                "stir_time": stir_time,
+                "stir_speed": stir_speed,
+                "settling_time": settling_time,
+                "purpose": f"pH调节: 混合试剂，目标pH={ph_value}"  # 改为 ph_value
+            }
+        })
+    
+    # 8. 等待反应平衡
+    action_sequence.append({
+        "action_name": "wait",
+        "action_kwargs": {
+            "time": settling_time,
+            "description": f"等待pH平衡到目标值 {ph_value}"  # 改为 ph_value
+        }
+    })
+    
+    print(f"ADJUST_PH: 协议生成完成，共 {len(action_sequence)} 个动作")
+    print(f"ADJUST_PH: 预计总时间: {addition_time + stir_time + settling_time:.0f} 秒")
+    
+    return action_sequence
+
+
+def generate_adjust_ph_protocol_stepwise(
+    G: nx.DiGraph,
+    vessel: str,
+    ph_value: float,
+    reagent: str,
+    max_volume: float = 10.0,
+    steps: int = 3
+) -> List[Dict[str, Any]]:
+    """
+    分步调节pH的协议（更安全，避免过度调节）
+    
+    Args:
+        G: 网络图
+        vessel: 目标容器
+        pH: 目标pH值
+        reagent: 酸碱试剂
+        max_volume: 最大试剂体积
+        steps: 分步数量
+    
+    Returns:
+        List[Dict[str, Any]]: 动作序列
+    """
+    action_sequence = []
+    
+    print(f"ADJUST_PH: 开始分步pH调节（{steps}步）")
+    
+    # 每步添加的体积
+    step_volume = max_volume / steps
+    
+    for i in range(steps):
+        print(f"ADJUST_PH: 第 {i+1}/{steps} 步，添加 {step_volume} mL")
+        
+        # 生成单步协议
+        step_actions = generate_adjust_ph_protocol(
+            G=G,
+            vessel=vessel,
+            ph_value=ph_value,
+            reagent=reagent,
+            volume=step_volume,
+            stir=True,
+            stir_speed=300.0,
+            stir_time=30.0,
+            settling_time=20.0
+        )
+        
+        action_sequence.extend(step_actions)
+        
+        # 步骤间等待
+        if i < steps - 1:
+            action_sequence.append({
+                "action_name": "wait",
+                "action_kwargs": {
+                    "time": 30,
+                    "description": f"pH调节第{i+1}步完成，等待下一步"
+                }
+            })
+    
+    print(f"ADJUST_PH: 分步pH调节完成")
+    return action_sequence
+
+
+# 便捷函数：常用pH调节
+def generate_acidify_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    target_ph: float = 2.0,
+    acid: str = "hydrochloric acid"
+) -> List[Dict[str, Any]]:
+    """酸化协议"""
+    return generate_adjust_ph_protocol(
+        G, vessel, target_ph, acid, 0.0, True, 300.0, 120.0, 60.0
+    )
+
+
+def generate_basify_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    target_ph: float = 12.0,
+    base: str = "sodium hydroxide"
+) -> List[Dict[str, Any]]:
+    """碱化协议"""
+    return generate_adjust_ph_protocol(
+        G, vessel, target_ph, base, 0.0, True, 300.0, 120.0, 60.0
+    )
+
+
+def generate_neutralize_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    reagent: str = "sodium hydroxide"
+) -> List[Dict[str, Any]]:
+    """中和协议（pH=7）"""
+    return generate_adjust_ph_protocol(
+        G, vessel, 7.0, reagent, 0.0, True, 350.0, 180.0, 90.0
+    )
+
+
+# 测试函数
+def test_adjust_ph_protocol():
+    """测试pH调节协议"""
+    print("=== ADJUST PH PROTOCOL 测试 ===")
+    print("测试完成")
+
+
+if __name__ == "__main__":
+    test_adjust_ph_protocol()

unilabos/compile/centrifuge_protocol.py

@@ -0,0 +1,285 @@
+from typing import List, Dict, Any
+import networkx as nx
+from .pump_protocol import generate_pump_protocol
+
+
+def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
+    """
+    获取容器中的液体体积
+    """
+    if vessel not in G.nodes():
+        return 0.0
+    
+    vessel_data = G.nodes[vessel].get('data', {})
+    liquids = vessel_data.get('liquid', [])
+    
+    total_volume = 0.0
+    for liquid in liquids:
+        if isinstance(liquid, dict) and 'liquid_volume' in liquid:
+            total_volume += liquid['liquid_volume']
+    
+    return total_volume
+
+
+def find_centrifuge_device(G: nx.DiGraph) -> str:
+    """
+    查找离心机设备
+    """
+    centrifuge_nodes = [node for node in G.nodes() 
+                       if (G.nodes[node].get('class') or '') == 'virtual_centrifuge']
+    
+    if centrifuge_nodes:
+        return centrifuge_nodes[0]
+    
+    raise ValueError("系统中未找到离心机设备")
+
+
+def find_centrifuge_vessel(G: nx.DiGraph) -> str:
+    """
+    查找离心机专用容器
+    """
+    possible_names = [
+        "centrifuge_tube",
+        "centrifuge_vessel", 
+        "tube_centrifuge",
+        "vessel_centrifuge",
+        "centrifuge",
+        "tube_15ml",
+        "tube_50ml"
+    ]
+    
+    for vessel_name in possible_names:
+        if vessel_name in G.nodes():
+            return vessel_name
+    
+    raise ValueError(f"未找到离心机容器。尝试了以下名称: {possible_names}")
+
+
+def generate_centrifuge_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    speed: float,
+    time: float,
+    temp: float = 25.0
+) -> List[Dict[str, Any]]:
+    """
+    生成离心操作的协议序列，复用 pump_protocol 的成熟算法
+    
+    离心流程：
+    1. 液体转移：将待离心溶液从源容器转移到离心机容器
+    2. 离心操作：执行离心分离
+    3. 上清液转移：将离心后的上清液转移回原容器或新容器
+    4. 沉淀处理：处理离心沉淀（可选）
+    
+    Args:
+        G: 有向图，节点为设备和容器，边为流体管道
+        vessel: 包含待离心溶液的容器名称
+        speed: 离心速度 (rpm)
+        time: 离心时间 (秒)
+        temp: 离心温度 (°C)，默认25°C
+    
+    Returns:
+        List[Dict[str, Any]]: 离心操作的动作序列
+    
+    Raises:
+        ValueError: 当找不到必要的设备时抛出异常
+    
+    Examples:
+        centrifuge_actions = generate_centrifuge_protocol(G, "reaction_mixture", 5000, 600, 4.0)
+    """
+    action_sequence = []
+    
+    print(f"CENTRIFUGE: 开始生成离心协议")
+    print(f"  - 源容器: {vessel}")
+    print(f"  - 离心速度: {speed} rpm")
+    print(f"  - 离心时间: {time}s ({time/60:.1f}分钟)")
+    print(f"  - 离心温度: {temp}°C")
+    
+    # 验证源容器存在
+    if vessel not in G.nodes():
+        raise ValueError(f"源容器 '{vessel}' 不存在于系统中")
+    
+    # 获取源容器中的液体体积
+    source_volume = get_vessel_liquid_volume(G, vessel)
+    print(f"CENTRIFUGE: 源容器 {vessel} 中有 {source_volume} mL 液体")
+    
+    # 查找离心机设备
+    try:
+        centrifuge_id = find_centrifuge_device(G)
+        print(f"CENTRIFUGE: 找到离心机: {centrifuge_id}")
+    except ValueError as e:
+        raise ValueError(f"无法找到离心机: {str(e)}")
+    
+    # 查找离心机容器
+    try:
+        centrifuge_vessel = find_centrifuge_vessel(G)
+        print(f"CENTRIFUGE: 找到离心机容器: {centrifuge_vessel}")
+    except ValueError as e:
+        raise ValueError(f"无法找到离心机容器: {str(e)}")
+    
+    # === 简化的体积计算策略 ===
+    if source_volume > 0:
+        # 如果能检测到液体体积，使用实际体积的大部分
+        transfer_volume = min(source_volume * 0.9, 15.0)  # 90%或最多15mL（离心管通常较小）
+        print(f"CENTRIFUGE: 检测到液体体积，将转移 {transfer_volume} mL")
+    else:
+        # 如果检测不到液体体积，默认转移标准量
+        transfer_volume = 10.0  # 标准离心管体积
+        print(f"CENTRIFUGE: 未检测到液体体积，默认转移 {transfer_volume} mL")
+    
+    # === 第一步：将待离心溶液转移到离心机容器 ===
+    print(f"CENTRIFUGE: 将 {transfer_volume} mL 溶液从 {vessel} 转移到 {centrifuge_vessel}")
+    try:
+        # 使用成熟的 pump_protocol 算法进行液体转移
+        transfer_to_centrifuge_actions = generate_pump_protocol(
+            G=G,
+            from_vessel=vessel,
+            to_vessel=centrifuge_vessel,
+            volume=transfer_volume,
+            flowrate=1.0,  # 离心转移用慢速，避免气泡
+            transfer_flowrate=1.0
+        )
+        action_sequence.extend(transfer_to_centrifuge_actions)
+    except Exception as e:
+        raise ValueError(f"无法将溶液转移到离心机: {str(e)}")
+    
+    # 转移后等待
+    wait_action = {
+        "action_name": "wait",
+        "action_kwargs": {"time": 5}
+    }
+    action_sequence.append(wait_action)
+    
+    # === 第二步：执行离心操作 ===
+    print(f"CENTRIFUGE: 执行离心操作")
+    centrifuge_action = {
+        "device_id": centrifuge_id,
+        "action_name": "centrifuge",
+        "action_kwargs": {
+            "vessel": centrifuge_vessel,
+            "speed": speed,
+            "time": time,
+            "temp": temp
+        }
+    }
+    action_sequence.append(centrifuge_action)
+    
+    # 离心后等待系统稳定
+    wait_action = {
+        "action_name": "wait",
+        "action_kwargs": {"time": 10}  # 离心后等待稍长，让沉淀稳定
+    }
+    action_sequence.append(wait_action)
+    
+    # === 第三步：将上清液转移回原容器 ===
+    print(f"CENTRIFUGE: 将上清液从离心机转移回 {vessel}")
+    try:
+        # 估算上清液体积（约为转移体积的80% - 假设20%成为沉淀）
+        supernatant_volume = transfer_volume * 0.8
+        print(f"CENTRIFUGE: 预计上清液体积 {supernatant_volume} mL")
+        
+        transfer_back_actions = generate_pump_protocol(
+            G=G,
+            from_vessel=centrifuge_vessel,
+            to_vessel=vessel,
+            volume=supernatant_volume,
+            flowrate=0.5,  # 上清液转移更慢，避免扰动沉淀
+            transfer_flowrate=0.5
+        )
+        action_sequence.extend(transfer_back_actions)
+    except Exception as e:
+        print(f"CENTRIFUGE: 将上清液转移回容器失败: {str(e)}")
+    
+    # === 第四步：清洗离心机容器 ===
+    print(f"CENTRIFUGE: 清洗离心机容器")
+    try:
+        # 查找清洗溶剂
+        cleaning_solvent = None
+        for solvent in ["flask_water", "flask_ethanol", "flask_acetone"]:
+            if solvent in G.nodes():
+                cleaning_solvent = solvent
+                break
+        
+        if cleaning_solvent:
+            # 用少量溶剂清洗离心管
+            cleaning_volume = 5.0  # 5mL清洗
+            print(f"CENTRIFUGE: 用 {cleaning_volume} mL {cleaning_solvent} 清洗")
+            
+            # 清洗溶剂加入
+            cleaning_actions = generate_pump_protocol(
+                G=G,
+                from_vessel=cleaning_solvent,
+                to_vessel=centrifuge_vessel,
+                volume=cleaning_volume,
+                flowrate=2.0,
+                transfer_flowrate=2.0
+            )
+            action_sequence.extend(cleaning_actions)
+            
+            # 将清洗液转移到废液
+            if "waste_workup" in G.nodes():
+                waste_actions = generate_pump_protocol(
+                    G=G,
+                    from_vessel=centrifuge_vessel,
+                    to_vessel="waste_workup",
+                    volume=cleaning_volume,
+                    flowrate=2.0,
+                    transfer_flowrate=2.0
+                )
+                action_sequence.extend(waste_actions)
+        
+    except Exception as e:
+        print(f"CENTRIFUGE: 清洗步骤失败: {str(e)}")
+    
+    print(f"CENTRIFUGE: 生成了 {len(action_sequence)} 个动作")
+    print(f"CENTRIFUGE: 离心协议生成完成")
+    print(f"CENTRIFUGE: 总处理体积: {transfer_volume} mL")
+    
+    return action_sequence
+
+
+# 便捷函数：常用离心方案
+def generate_low_speed_centrifuge_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    time: float = 300.0  # 5分钟
+) -> List[Dict[str, Any]]:
+    """低速离心：细胞分离或大颗粒沉淀"""
+    return generate_centrifuge_protocol(G, vessel, 1000.0, time, 4.0)
+
+
+def generate_high_speed_centrifuge_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    time: float = 600.0  # 10分钟
+) -> List[Dict[str, Any]]:
+    """高速离心：蛋白质沉淀或小颗粒分离"""
+    return generate_centrifuge_protocol(G, vessel, 12000.0, time, 4.0)
+
+
+def generate_standard_centrifuge_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    time: float = 600.0  # 10分钟
+) -> List[Dict[str, Any]]:
+    """标准离心：常规样品处理"""
+    return generate_centrifuge_protocol(G, vessel, 5000.0, time, 25.0)
+
+
+def generate_cold_centrifuge_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    speed: float = 5000.0,
+    time: float = 600.0
+) -> List[Dict[str, Any]]:
+    """冷冻离心：热敏感样品处理"""
+    return generate_centrifuge_protocol(G, vessel, speed, time, 4.0)
+
+
+def generate_ultra_centrifuge_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    time: float = 1800.0  # 30分钟
+) -> List[Dict[str, Any]]:
+    """超高速离心：超细颗粒分离"""
+    return generate_centrifuge_protocol(G, vessel, 15000.0, time, 4.0)

unilabos/compile/clean_protocol.py

@@ -6,7 +6,7 @@ def generate_clean_protocol(
     G: nx.DiGraph, 
     vessel: str,  # Vessel to clean.
     solvent: str, # Solvent to clean vessel with.
-    volume: float = 25000.0, # Optional. Volume of solvent to clean vessel with.
+    volume: float = 25.0, # Optional. Volume of solvent to clean vessel with.
     temp: float = 25, # Optional. Temperature to heat vessel to while cleaning.
     repeats: int = 1, # Optional. Number of cleaning cycles to perform.
 ) -> list[dict]:
@@ -27,7 +27,7 @@ def generate_clean_protocol(
     from_vessel = f"flask_{solvent}"
     waste_vessel = f"waste_workup"
     
-    transfer_flowrate = flowrate = 2500.0
+    transfer_flowrate = flowrate = 2.5
     
     # 生成泵操作的动作序列
     for i in range(repeats):

unilabos/compile/clean_vessel_protocol.py

@@ -0,0 +1,439 @@
+from typing import List, Dict, Any
+import networkx as nx
+from .pump_protocol import generate_pump_protocol
+
+
+def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
+    """
+    查找溶剂容器，支持多种匹配模式：
+    1. 容器名称匹配（如 flask_water, reagent_bottle_1-DMF）
+    2. 容器内液体类型匹配（如 liquid_type: "DMF", "ethanol"）
+    """
+    print(f"CLEAN_VESSEL: 正在查找溶剂 '{solvent}' 的容器...")
+    
+    # 第一步：通过容器名称匹配
+    possible_names = [
+        f"flask_{solvent}",           # flask_water, flask_ethanol
+        f"bottle_{solvent}",          # bottle_water, bottle_ethanol  
+        f"vessel_{solvent}",          # vessel_water, vessel_ethanol
+        f"{solvent}_flask",           # water_flask, ethanol_flask
+        f"{solvent}_bottle",          # water_bottle, ethanol_bottle
+        f"{solvent}",                 # 直接用溶剂名
+        f"solvent_{solvent}",         # solvent_water, solvent_ethanol
+        f"reagent_bottle_{solvent}",  # reagent_bottle_DMF
+    ]
+    
+    # 尝试名称匹配
+    for vessel_name in possible_names:
+        if vessel_name in G.nodes():
+            print(f"CLEAN_VESSEL: 通过名称匹配找到容器: {vessel_name}")
+            return vessel_name
+    
+    # 第二步：通过模糊名称匹配（名称中包含溶剂名）
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            # 检查节点ID或名称中是否包含溶剂名
+            node_name = G.nodes[node_id].get('name', '').lower()
+            if (solvent.lower() in node_id.lower() or 
+                solvent.lower() in node_name):
+                print(f"CLEAN_VESSEL: 通过模糊名称匹配找到容器: {node_id} (名称: {node_name})")
+                return node_id
+    
+    # 第三步：通过液体类型匹配
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            vessel_data = G.nodes[node_id].get('data', {})
+            liquids = vessel_data.get('liquid', [])
+            
+            for liquid in liquids:
+                if isinstance(liquid, dict):
+                    # 支持两种格式的液体类型字段
+                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
+                    reagent_name = vessel_data.get('reagent_name', '')
+                    config_reagent = G.nodes[node_id].get('config', {}).get('reagent', '')
+                    
+                    # 检查多个可能的字段
+                    if (liquid_type.lower() == solvent.lower() or 
+                        reagent_name.lower() == solvent.lower() or
+                        config_reagent.lower() == solvent.lower()):
+                        print(f"CLEAN_VESSEL: 通过液体类型匹配找到容器: {node_id}")
+                        print(f"  - liquid_type: {liquid_type}")
+                        print(f"  - reagent_name: {reagent_name}")
+                        print(f"  - config.reagent: {config_reagent}")
+                        return node_id
+    
+    # 第四步：列出所有可用的容器信息帮助调试
+    available_containers = []
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            vessel_data = G.nodes[node_id].get('data', {})
+            config_data = G.nodes[node_id].get('config', {})
+            liquids = vessel_data.get('liquid', [])
+            
+            container_info = {
+                'id': node_id,
+                'name': G.nodes[node_id].get('name', ''),
+                'liquid_types': [],
+                'reagent_name': vessel_data.get('reagent_name', ''),
+                'config_reagent': config_data.get('reagent', '')
+            }
+            
+            for liquid in liquids:
+                if isinstance(liquid, dict):
+                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
+                    if liquid_type:
+                        container_info['liquid_types'].append(liquid_type)
+            
+            available_containers.append(container_info)
+    
+    print(f"CLEAN_VESSEL: 可用容器列表:")
+    for container in available_containers:
+        print(f"  - {container['id']}: {container['name']}")
+        print(f"    液体类型: {container['liquid_types']}")
+        print(f"    试剂名称: {container['reagent_name']}")
+        print(f"    配置试剂: {container['config_reagent']}")
+    
+    raise ValueError(f"未找到溶剂 '{solvent}' 的容器。尝试了名称匹配: {possible_names}")
+
+
+def find_solvent_vessel_by_any_match(G: nx.DiGraph, solvent: str) -> str:
+    """
+    增强版溶剂容器查找，支持各种匹配方式的别名函数
+    """
+    return find_solvent_vessel(G, solvent)
+
+
+def find_waste_vessel(G: nx.DiGraph) -> str:
+    """
+    查找废液容器
+    """
+    possible_waste_names = [
+        "waste_workup",
+        "flask_waste", 
+        "bottle_waste",
+        "waste",
+        "waste_vessel",
+        "waste_container"
+    ]
+    
+    for waste_name in possible_waste_names:
+        if waste_name in G.nodes():
+            return waste_name
+    
+    raise ValueError(f"未找到废液容器。尝试了以下名称: {possible_waste_names}")
+
+
+def find_connected_heatchill(G: nx.DiGraph, vessel: str) -> str:
+    """
+    查找与指定容器相连的加热冷却设备
+    """
+    # 查找所有加热冷却设备节点
+    heatchill_nodes = [node for node in G.nodes() 
+                      if (G.nodes[node].get('class') or '') == 'virtual_heatchill']
+    
+    # 检查哪个加热设备与目标容器相连（机械连接）
+    for heatchill in heatchill_nodes:
+        if G.has_edge(heatchill, vessel) or G.has_edge(vessel, heatchill):
+            return heatchill
+    
+    # 如果没有直接连接，返回第一个可用的加热设备
+    if heatchill_nodes:
+        return heatchill_nodes[0]
+    
+    return None  # 没有加热设备也可以工作，只是不能加热
+
+
+def generate_clean_vessel_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    solvent: str,
+    volume: float,
+    temp: float,
+    repeats: int = 1
+) -> List[Dict[str, Any]]:
+    """
+    生成容器清洗操作的协议序列，复用 pump_protocol 的成熟算法
+    
+    清洗流程：
+    1. 查找溶剂容器和废液容器
+    2. 如果需要加热，启动加热设备
+    3. 重复以下操作 repeats 次：
+       a. 使用 pump_protocol 将溶剂从溶剂容器转移到目标容器
+       b. (可选) 等待清洗作用时间
+       c. 使用 pump_protocol 将清洗液从目标容器转移到废液容器
+    4. 如果加热了，停止加热
+    
+    Args:
+        G: 有向图，节点为设备和容器，边为流体管道
+        vessel: 要清洗的容器名称
+        solvent: 用于清洗的溶剂名称  
+        volume: 每次清洗使用的溶剂体积
+        temp: 清洗时的温度
+        repeats: 清洗操作的重复次数，默认为 1
+    
+    Returns:
+        List[Dict[str, Any]]: 容器清洗操作的动作序列
+    
+    Raises:
+        ValueError: 当找不到必要的容器或设备时抛出异常
+    
+    Examples:
+        clean_protocol = generate_clean_vessel_protocol(G, "main_reactor", "water", 100.0, 60.0, 2)
+    """
+    action_sequence = []
+    
+    print(f"CLEAN_VESSEL: 开始生成容器清洗协议")
+    print(f"  - 目标容器: {vessel}")
+    print(f"  - 清洗溶剂: {solvent}")
+    print(f"  - 清洗体积: {volume} mL")
+    print(f"  - 清洗温度: {temp}°C")
+    print(f"  - 重复次数: {repeats}")
+    
+    # 验证目标容器存在
+    if vessel not in G.nodes():
+        raise ValueError(f"目标容器 '{vessel}' 不存在于系统中")
+    
+    # 查找溶剂容器
+    try:
+        solvent_vessel = find_solvent_vessel(G, solvent)
+        print(f"CLEAN_VESSEL: 找到溶剂容器: {solvent_vessel}")
+    except ValueError as e:
+        raise ValueError(f"无法找到溶剂容器: {str(e)}")
+    
+    # 查找废液容器
+    try:
+        waste_vessel = find_waste_vessel(G)
+        print(f"CLEAN_VESSEL: 找到废液容器: {waste_vessel}")
+    except ValueError as e:
+        raise ValueError(f"无法找到废液容器: {str(e)}")
+    
+    # 查找加热设备（可选）
+    heatchill_id = find_connected_heatchill(G, vessel)
+    if heatchill_id:
+        print(f"CLEAN_VESSEL: 找到加热设备: {heatchill_id}")
+    else:
+        print(f"CLEAN_VESSEL: 未找到加热设备，将在室温下清洗")
+    
+    # 第一步：如果需要加热且有加热设备，启动加热
+    if temp > 25.0 and heatchill_id:
+        print(f"CLEAN_VESSEL: 启动加热至 {temp}°C")
+        heatchill_start_action = {
+            "device_id": heatchill_id,
+            "action_name": "heat_chill_start",
+            "action_kwargs": {
+                "vessel": vessel,
+                "temp": temp,
+                "purpose": f"cleaning with {solvent}"
+            }
+        }
+        action_sequence.append(heatchill_start_action)
+        
+        # 等待温度稳定
+        wait_action = {
+            "action_name": "wait", 
+            "action_kwargs": {"time": 30}  # 等待30秒让温度稳定
+        }
+        action_sequence.append(wait_action)
+    
+    # 第二步：重复清洗操作
+    for repeat in range(repeats):
+        print(f"CLEAN_VESSEL: 执行第 {repeat + 1} 次清洗")
+        
+        # 2a. 使用 pump_protocol 将溶剂转移到目标容器
+        print(f"CLEAN_VESSEL: 将 {volume} mL {solvent} 转移到 {vessel}")
+        try:
+            # 调用成熟的 pump_protocol 算法
+            add_solvent_actions = generate_pump_protocol(
+                G=G,
+                from_vessel=solvent_vessel,
+                to_vessel=vessel,
+                volume=volume,
+                flowrate=2.5,  # 适中的流速，避免飞溅
+                transfer_flowrate=2.5
+            )
+            action_sequence.extend(add_solvent_actions)
+        except Exception as e:
+            raise ValueError(f"无法将溶剂转移到容器: {str(e)}")
+        
+        # 2b. 等待清洗作用时间（让溶剂充分清洗容器）
+        cleaning_wait_time = 60 if temp > 50.0 else 30  # 高温下等待更久
+        print(f"CLEAN_VESSEL: 等待清洗作用 {cleaning_wait_time} 秒")
+        wait_action = {
+            "action_name": "wait", 
+            "action_kwargs": {"time": cleaning_wait_time}
+        }
+        action_sequence.append(wait_action)
+        
+        # 2c. 使用 pump_protocol 将清洗液转移到废液容器
+        print(f"CLEAN_VESSEL: 将清洗液从 {vessel} 转移到废液容器")
+        try:
+            # 调用成熟的 pump_protocol 算法
+            remove_waste_actions = generate_pump_protocol(
+                G=G,
+                from_vessel=vessel,
+                to_vessel=waste_vessel,
+                volume=volume,
+                flowrate=2.5,  # 适中的流速
+                transfer_flowrate=2.5
+            )
+            action_sequence.extend(remove_waste_actions)
+        except Exception as e:
+            raise ValueError(f"无法将清洗液转移到废液容器: {str(e)}")
+        
+        # 2d. 清洗循环间的短暂等待
+        if repeat < repeats - 1:  # 不是最后一次清洗
+            print(f"CLEAN_VESSEL: 清洗循环间等待")
+            wait_action = {
+                "action_name": "wait", 
+                "action_kwargs": {"time": 10}
+            }
+            action_sequence.append(wait_action)
+    
+    # 第三步：如果加热了，停止加热
+    if temp > 25.0 and heatchill_id:
+        print(f"CLEAN_VESSEL: 停止加热")
+        heatchill_stop_action = {
+            "device_id": heatchill_id,
+            "action_name": "heat_chill_stop",
+            "action_kwargs": {
+                "vessel": vessel
+            }
+        }
+        action_sequence.append(heatchill_stop_action)
+    
+    print(f"CLEAN_VESSEL: 生成了 {len(action_sequence)} 个动作")
+    print(f"CLEAN_VESSEL: 清洗协议生成完成")
+    
+    return action_sequence
+
+
+# 便捷函数：常用清洗方案
+def generate_quick_clean_protocol(
+    G: nx.DiGraph, 
+    vessel: str, 
+    solvent: str = "water", 
+    volume: float = 100.0
+) -> List[Dict[str, Any]]:
+    """快速清洗：室温，单次清洗"""
+    return generate_clean_vessel_protocol(G, vessel, solvent, volume, 25.0, 1)
+
+
+def generate_thorough_clean_protocol(
+    G: nx.DiGraph, 
+    vessel: str, 
+    solvent: str = "water", 
+    volume: float = 150.0,
+    temp: float = 60.0
+) -> List[Dict[str, Any]]:
+    """深度清洗：加热，多次清洗"""
+    return generate_clean_vessel_protocol(G, vessel, solvent, volume, temp, 3)
+
+
+def generate_organic_clean_protocol(
+    G: nx.DiGraph, 
+    vessel: str, 
+    volume: float = 100.0
+) -> List[Dict[str, Any]]:
+    """有机清洗：先用有机溶剂，再用水清洗"""
+    action_sequence = []
+    
+    # 第一步：有机溶剂清洗
+    try:
+        organic_actions = generate_clean_vessel_protocol(
+            G, vessel, "acetone", volume, 25.0, 2
+        )
+        action_sequence.extend(organic_actions)
+    except ValueError:
+        # 如果没有丙酮，尝试乙醇
+        try:
+            organic_actions = generate_clean_vessel_protocol(
+                G, vessel, "ethanol", volume, 25.0, 2
+            )
+            action_sequence.extend(organic_actions)
+        except ValueError:
+            print("警告：未找到有机溶剂，跳过有机清洗步骤")
+    
+    # 第二步：水清洗
+    water_actions = generate_clean_vessel_protocol(
+        G, vessel, "water", volume, 25.0, 2
+    )
+    action_sequence.extend(water_actions)
+    
+    return action_sequence
+
+
+def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
+    """获取容器中的液体体积（修复版）"""
+    if vessel not in G.nodes():
+        return 0.0
+    
+    vessel_data = G.nodes[vessel].get('data', {})
+    liquids = vessel_data.get('liquid', [])
+    
+    total_volume = 0.0
+    for liquid in liquids:
+        if isinstance(liquid, dict):
+            # 支持两种格式：新格式 (name, volume) 和旧格式 (liquid_type, liquid_volume)
+            volume = liquid.get('volume') or liquid.get('liquid_volume', 0.0)
+            total_volume += volume
+    
+    return total_volume
+
+
+def get_vessel_liquid_types(G: nx.DiGraph, vessel: str) -> List[str]:
+    """获取容器中所有液体的类型"""
+    if vessel not in G.nodes():
+        return []
+    
+    vessel_data = G.nodes[vessel].get('data', {})
+    liquids = vessel_data.get('liquid', [])
+    
+    liquid_types = []
+    for liquid in liquids:
+        if isinstance(liquid, dict):
+            # 支持两种格式的液体类型字段
+            liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
+            if liquid_type:
+                liquid_types.append(liquid_type)
+    
+    return liquid_types
+
+
+def find_vessel_by_content(G: nx.DiGraph, content: str) -> List[str]:
+    """
+    根据内容物查找所有匹配的容器
+    返回匹配容器的ID列表
+    """
+    matching_vessels = []
+    
+    for node_id in G.nodes():
+        if G.nodes[node_id].get('type') == 'container':
+            # 检查容器名称匹配
+            node_name = G.nodes[node_id].get('name', '').lower()
+            if content.lower() in node_id.lower() or content.lower() in node_name:
+                matching_vessels.append(node_id)
+                continue
+            
+            # 检查液体类型匹配
+            vessel_data = G.nodes[node_id].get('data', {})
+            liquids = vessel_data.get('liquid', [])
+            config_data = G.nodes[node_id].get('config', {})
+            
+            # 检查 reagent_name 和 config.reagent
+            reagent_name = vessel_data.get('reagent_name', '').lower()
+            config_reagent = config_data.get('reagent', '').lower()
+            
+            if (content.lower() == reagent_name or 
+                content.lower() == config_reagent):
+                matching_vessels.append(node_id)
+                continue
+            
+            # 检查液体列表
+            for liquid in liquids:
+                if isinstance(liquid, dict):
+                    liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
+                    if liquid_type.lower() == content.lower():
+                        matching_vessels.append(node_id)
+                        break
+    
+    return matching_vessels

unilabos/compile/dissolve_protocol.py

@@ -0,0 +1,359 @@
+from typing import List, Dict, Any
+import networkx as nx
+from .pump_protocol import generate_pump_protocol
+
+
+def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
+    """
+    查找溶剂容器
+    """
+    # 按照pump_protocol的命名规则查找溶剂瓶
+    solvent_vessel_id = f"flask_{solvent}"
+    
+    if solvent_vessel_id in G.nodes():
+        return solvent_vessel_id
+    
+    # 如果直接匹配失败，尝试模糊匹配
+    for node in G.nodes():
+        if node.startswith('flask_') and solvent.lower() in node.lower():
+            return node
+    
+    # 如果还是找不到，列出所有可用的溶剂瓶
+    available_flasks = [node for node in G.nodes() 
+                       if node.startswith('flask_') 
+                       and G.nodes[node].get('type') == 'container']
+    
+    raise ValueError(f"找不到溶剂 '{solvent}' 对应的溶剂瓶。可用溶剂瓶: {available_flasks}")
+
+
+def find_connected_heatchill(G: nx.DiGraph, vessel: str) -> str:
+    """
+    查找与指定容器相连的加热搅拌器
+    """
+    # 查找所有加热搅拌器节点
+    heatchill_nodes = [node for node in G.nodes() 
+                      if G.nodes[node].get('class') == 'virtual_heatchill']
+    
+    # 检查哪个加热器与目标容器相连
+    for heatchill in heatchill_nodes:
+        if G.has_edge(heatchill, vessel) or G.has_edge(vessel, heatchill):
+            return heatchill
+    
+    # 如果没有直接连接，返回第一个可用的加热器
+    return heatchill_nodes[0] if heatchill_nodes else None
+
+
+def generate_dissolve_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    solvent: str,
+    volume: float,
+    amount: str = "",
+    temp: float = 25.0,
+    time: float = 0.0,
+    stir_speed: float = 300.0
+) -> List[Dict[str, Any]]:
+    """
+    生成溶解操作的协议序列，复用 pump_protocol 的成熟算法
+    
+    溶解流程：
+    1. 溶剂转移：将溶剂从溶剂瓶转移到目标容器
+    2. 启动加热搅拌：设置温度和搅拌
+    3. 等待溶解：监控溶解过程
+    4. 停止加热搅拌：完成溶解
+    
+    Args:
+        G: 有向图，节点为设备和容器，边为流体管道
+        vessel: 目标容器（要进行溶解的容器）
+        solvent: 溶剂名称（用于查找对应的溶剂瓶）
+        volume: 溶剂体积 (mL)
+        amount: 要溶解的物质描述
+        temp: 溶解温度 (°C)，默认25°C（室温）
+        time: 溶解时间 (秒)，默认0（立即完成）
+        stir_speed: 搅拌速度 (RPM)，默认300 RPM
+    
+    Returns:
+        List[Dict[str, Any]]: 溶解操作的动作序列
+    
+    Raises:
+        ValueError: 当找不到必要的设备或容器时
+    
+    Examples:
+        dissolve_actions = generate_dissolve_protocol(G, "reaction_mixture", "DMF", 10.0, "NaCl 2g", 60.0, 600.0, 400.0)
+    """
+    action_sequence = []
+    
+    print(f"DISSOLVE: 开始生成溶解协议")
+    print(f"  - 目标容器: {vessel}")
+    print(f"  - 溶剂: {solvent}")
+    print(f"  - 溶剂体积: {volume} mL")
+    print(f"  - 要溶解的物质: {amount}")
+    print(f"  - 溶解温度: {temp}°C")
+    print(f"  - 溶解时间: {time}s ({time/60:.1f}分钟)" if time > 0 else "  - 溶解时间: 立即完成")
+    print(f"  - 搅拌速度: {stir_speed} RPM")
+    
+    # 验证目标容器存在
+    if vessel not in G.nodes():
+        raise ValueError(f"目标容器 '{vessel}' 不存在于系统中")
+    
+    # 查找溶剂瓶
+    try:
+        solvent_vessel = find_solvent_vessel(G, solvent)
+        print(f"DISSOLVE: 找到溶剂瓶: {solvent_vessel}")
+    except ValueError as e:
+        raise ValueError(f"无法找到溶剂 '{solvent}': {str(e)}")
+    
+    # 验证是否存在从溶剂瓶到目标容器的路径
+    try:
+        path = nx.shortest_path(G, source=solvent_vessel, target=vessel)
+        print(f"DISSOLVE: 找到路径 {solvent_vessel} -> {vessel}: {path}")
+    except nx.NetworkXNoPath:
+        raise ValueError(f"从溶剂瓶 '{solvent_vessel}' 到目标容器 '{vessel}' 没有可用路径")
+    
+    # 查找加热搅拌器
+    heatchill_id = None
+    if temp > 25.0 or stir_speed > 0 or time > 0:
+        try:
+            heatchill_id = find_connected_heatchill(G, vessel)
+            if heatchill_id:
+                print(f"DISSOLVE: 找到加热搅拌器: {heatchill_id}")
+            else:
+                print(f"DISSOLVE: 警告 - 需要加热/搅拌但未找到与容器 {vessel} 相连的加热搅拌器")
+        except Exception as e:
+            print(f"DISSOLVE: 加热搅拌器配置出错: {str(e)}")
+    
+    # === 第一步：启动加热搅拌（在添加溶剂前） ===
+    if heatchill_id and (temp > 25.0 or time > 0):
+        print(f"DISSOLVE: 启动加热搅拌器，温度: {temp}°C")
+        
+        if time > 0:
+            # 如果指定了时间，使用定时加热搅拌
+            heatchill_action = {
+                "device_id": heatchill_id,
+                "action_name": "heat_chill",
+                "action_kwargs": {
+                    "vessel": vessel,
+                    "temp": temp,
+                    "time": time,
+                    "stir": True,
+                    "stir_speed": stir_speed,
+                    "purpose": f"溶解 {amount} 在 {solvent} 中"
+                }
+            }
+        else:
+            # 如果没有指定时间，使用持续加热搅拌
+            heatchill_action = {
+                "device_id": heatchill_id,
+                "action_name": "heat_chill_start",
+                "action_kwargs": {
+                    "vessel": vessel,
+                    "temp": temp,
+                    "purpose": f"溶解 {amount} 在 {solvent} 中"
+                }
+            }
+        
+        action_sequence.append(heatchill_action)
+        
+        # 等待温度稳定
+        if temp > 25.0:
+            wait_time = min(60, abs(temp - 25.0) * 1.5)  # 根据温差估算预热时间
+            action_sequence.append({
+                "action_name": "wait",
+                "action_kwargs": {"time": wait_time}
+            })
+    
+    # === 第二步：添加溶剂到目标容器 ===
+    if volume > 0:
+        print(f"DISSOLVE: 将 {volume} mL {solvent} 从 {solvent_vessel} 转移到 {vessel}")
+        
+        # 计算流速 - 溶解时通常用较慢的速度，避免飞溅
+        transfer_flowrate = 1.0  # 较慢的转移速度
+        flowrate = 0.5          # 较慢的注入速度
+        
+        try:
+            # 使用成熟的 pump_protocol 算法进行液体转移
+            pump_actions = generate_pump_protocol(
+                G=G,
+                from_vessel=solvent_vessel,
+                to_vessel=vessel,
+                volume=volume,
+                flowrate=flowrate,           # 注入速度 - 较慢避免飞溅
+                transfer_flowrate=transfer_flowrate  # 转移速度
+            )
+            
+            action_sequence.extend(pump_actions)
+            
+        except Exception as e:
+            raise ValueError(f"生成泵协议时出错: {str(e)}")
+        
+        # 溶剂添加后等待
+        action_sequence.append({
+            "action_name": "wait",
+            "action_kwargs": {"time": 5}
+        })
+    
+    # === 第三步：如果没有使用定时加热搅拌，但需要等待溶解 ===
+    if time > 0 and heatchill_id and temp <= 25.0:
+        # 只需要搅拌等待，不需要加热
+        print(f"DISSOLVE: 室温搅拌 {time}s 等待溶解")
+        
+        stir_action = {
+            "device_id": heatchill_id,
+            "action_name": "heat_chill",
+            "action_kwargs": {
+                "vessel": vessel,
+                "temp": 25.0,  # 室温
+                "time": time,
+                "stir": True,
+                "stir_speed": stir_speed,
+                "purpose": f"室温搅拌溶解 {amount}"
+            }
+        }
+        action_sequence.append(stir_action)
+    
+    # === 第四步：如果使用了持续加热，需要手动停止 ===
+    if heatchill_id and time == 0 and temp > 25.0:
+        print(f"DISSOLVE: 停止加热搅拌器")
+        
+        stop_action = {
+            "device_id": heatchill_id,
+            "action_name": "heat_chill_stop",
+            "action_kwargs": {
+                "vessel": vessel
+            }
+        }
+        action_sequence.append(stop_action)
+    
+    print(f"DISSOLVE: 生成了 {len(action_sequence)} 个动作")
+    print(f"DISSOLVE: 溶解协议生成完成")
+    
+    return action_sequence
+
+
+# 便捷函数：常用溶解方案
+def generate_room_temp_dissolve_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    solvent: str,
+    volume: float,
+    amount: str = "",
+    stir_time: float = 300.0  # 5分钟
+) -> List[Dict[str, Any]]:
+    """室温溶解：快速搅拌，短时间"""
+    return generate_dissolve_protocol(G, vessel, solvent, volume, amount, 25.0, stir_time, 400.0)
+
+
+def generate_heated_dissolve_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    solvent: str,
+    volume: float,
+    amount: str = "",
+    temp: float = 60.0,
+    dissolve_time: float = 900.0  # 15分钟
+) -> List[Dict[str, Any]]:
+    """加热溶解：中等温度，较长时间"""
+    return generate_dissolve_protocol(G, vessel, solvent, volume, amount, temp, dissolve_time, 300.0)
+
+
+def generate_gentle_dissolve_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    solvent: str,
+    volume: float,
+    amount: str = "",
+    temp: float = 40.0,
+    dissolve_time: float = 1800.0  # 30分钟
+) -> List[Dict[str, Any]]:
+    """温和溶解：低温，长时间，慢搅拌"""
+    return generate_dissolve_protocol(G, vessel, solvent, volume, amount, temp, dissolve_time, 200.0)
+
+
+def generate_hot_dissolve_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    solvent: str,
+    volume: float,
+    amount: str = "",
+    temp: float = 80.0,
+    dissolve_time: float = 600.0  # 10分钟
+) -> List[Dict[str, Any]]:
+    """高温溶解：高温，中等时间，快搅拌"""
+    return generate_dissolve_protocol(G, vessel, solvent, volume, amount, temp, dissolve_time, 500.0)
+
+
+def generate_sequential_dissolve_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    dissolve_steps: List[Dict[str, Any]]
+) -> List[Dict[str, Any]]:
+    """
+    生成连续溶解多种物质的协议
+    
+    Args:
+        G: 网络图
+        vessel: 目标容器
+        dissolve_steps: 溶解步骤列表，每个元素包含溶解参数
+    
+    Returns:
+        List[Dict[str, Any]]: 完整的动作序列
+    
+    Example:
+        dissolve_steps = [
+            {
+                "solvent": "water",
+                "volume": 5.0,
+                "amount": "NaCl 1g",
+                "temp": 25.0,
+                "time": 300.0,
+                "stir_speed": 300.0
+            },
+            {
+                "solvent": "ethanol", 
+                "volume": 2.0,
+                "amount": "organic compound 0.5g",
+                "temp": 40.0,
+                "time": 600.0,
+                "stir_speed": 400.0
+            }
+        ]
+    """
+    action_sequence = []
+    
+    for i, step in enumerate(dissolve_steps):
+        print(f"DISSOLVE: 处理第 {i+1}/{len(dissolve_steps)} 个溶解步骤")
+        
+        # 生成单个溶解步骤的协议
+        dissolve_actions = generate_dissolve_protocol(
+            G=G,
+            vessel=vessel,
+            solvent=step.get('solvent'),
+            volume=step.get('volume', 0.0),
+            amount=step.get('amount', ''),
+            temp=step.get('temp', 25.0),
+            time=step.get('time', 0.0),
+            stir_speed=step.get('stir_speed', 300.0)
+        )
+        
+        action_sequence.extend(dissolve_actions)
+        
+        # 在步骤之间加入等待时间
+        if i < len(dissolve_steps) - 1:  # 不是最后一个步骤
+            action_sequence.append({
+                "action_name": "wait",
+                "action_kwargs": {"time": 10}
+            })
+    
+    print(f"DISSOLVE: 连续溶解协议生成完成，共 {len(action_sequence)} 个动作")
+    return action_sequence
+
+
+# 测试函数
+def test_dissolve_protocol():
+    """测试溶解协议的示例"""
+    print("=== DISSOLVE PROTOCOL 测试 ===")
+    print("测试完成")
+
+
+if __name__ == "__main__":
+    test_dissolve_protocol()

unilabos/compile/dry_protocol.py

@@ -0,0 +1,165 @@
+import networkx as nx
+from typing import List, Dict, Any
+
+
+def find_connected_heater(G: nx.DiGraph, vessel: str) -> str:
+    """
+    查找与容器相连的加热器
+    
+    Args:
+        G: 网络图
+        vessel: 容器名称
+    
+    Returns:
+        str: 加热器ID，如果没有则返回None
+    """
+    print(f"DRY: 正在查找与容器 '{vessel}' 相连的加热器...")
+    
+    # 查找所有加热器节点
+    heater_nodes = [node for node in G.nodes() 
+                   if ('heater' in node.lower() or 
+                       'heat' in node.lower() or
+                       G.nodes[node].get('class') == 'virtual_heatchill' or
+                       G.nodes[node].get('type') == 'heater')]
+    
+    print(f"DRY: 找到的加热器节点: {heater_nodes}")
+    
+    # 检查是否有加热器与目标容器相连
+    for heater in heater_nodes:
+        if G.has_edge(heater, vessel) or G.has_edge(vessel, heater):
+            print(f"DRY: 找到与容器 '{vessel}' 相连的加热器: {heater}")
+            return heater
+    
+    # 如果没有直接连接，查找距离最近的加热器
+    for heater in heater_nodes:
+        try:
+            path = nx.shortest_path(G, source=heater, target=vessel)
+            if len(path) <= 3:  # 最多2个中间节点
+                print(f"DRY: 找到距离较近的加热器: {heater}, 路径: {' → '.join(path)}")
+                return heater
+        except nx.NetworkXNoPath:
+            continue
+    
+    print(f"DRY: 未找到与容器 '{vessel}' 相连的加热器")
+    return None
+
+
+def generate_dry_protocol(
+    G: nx.DiGraph,
+    compound: str,
+    vessel: str,
+    **kwargs  # 接收其他可能的参数但不使用
+) -> List[Dict[str, Any]]:
+    """
+    生成干燥协议序列
+    
+    Args:
+        G: 有向图，节点为容器和设备
+        compound: 化合物名称（从XDL传入）
+        vessel: 目标容器（从XDL传入）
+        **kwargs: 其他可选参数，但不使用
+    
+    Returns:
+        List[Dict[str, Any]]: 动作序列
+    """
+    action_sequence = []
+    
+    # 默认参数
+    dry_temp = 60.0  # 默认干燥温度 60°C
+    dry_time = 3600.0  # 默认干燥时间 1小时（3600秒）
+    
+    print(f"DRY: 开始生成干燥协议")
+    print(f"  - 化合物: {compound}")
+    print(f"  - 容器: {vessel}")
+    print(f"  - 干燥温度: {dry_temp}°C")
+    print(f"  - 干燥时间: {dry_time/60:.0f} 分钟")
+    
+    # 1. 验证目标容器存在
+    if vessel not in G.nodes():
+        print(f"DRY: 警告 - 容器 '{vessel}' 不存在于系统中，跳过干燥")
+        return action_sequence
+    
+    # 2. 查找相连的加热器
+    heater_id = find_connected_heater(G, vessel)
+    
+    if heater_id is None:
+        print(f"DRY: 警告 - 未找到与容器 '{vessel}' 相连的加热器，跳过干燥")
+        # 添加一个等待动作，表示干燥过程（模拟）
+        action_sequence.append({
+            "action_name": "wait",
+            "action_kwargs": {
+                "time": 60.0,  # 等待1分钟
+                "description": f"模拟干燥 {compound} (无加热器可用)"
+            }
+        })
+        return action_sequence
+    
+    # 3. 启动加热器进行干燥
+    print(f"DRY: 启动加热器 {heater_id} 进行干燥")
+    
+    # 3.1 启动加热
+    action_sequence.append({
+        "device_id": heater_id,
+        "action_name": "heat_chill_start",
+        "action_kwargs": {
+            "vessel": vessel,
+            "temp": dry_temp,
+            "purpose": f"干燥 {compound}"
+        }
+    })
+    
+    # 3.2 等待温度稳定
+    action_sequence.append({
+        "action_name": "wait",
+        "action_kwargs": {
+            "time": 60.0,
+            "description": f"等待温度稳定到 {dry_temp}°C"
+        }
+    })
+    
+    # 3.3 保持干燥温度
+    action_sequence.append({
+        "device_id": heater_id,
+        "action_name": "heat_chill",
+        "action_kwargs": {
+            "vessel": vessel,
+            "temp": dry_temp,
+            "time": dry_time,
+            "purpose": f"干燥 {compound}，保持温度 {dry_temp}°C"
+        }
+    })
+    
+    # 3.4 停止加热
+    action_sequence.append({
+        "device_id": heater_id,
+        "action_name": "heat_chill_stop",
+        "action_kwargs": {
+            "vessel": vessel,
+            "purpose": f"干燥完成，停止加热"
+        }
+    })
+    
+    # 3.5 等待冷却
+    action_sequence.append({
+        "action_name": "wait",
+        "action_kwargs": {
+            "time": 300.0,  # 等待5分钟冷却
+            "description": f"等待 {compound} 冷却"
+        }
+    })
+    
+    print(f"DRY: 协议生成完成，共 {len(action_sequence)} 个动作")
+    print(f"DRY: 预计总时间: {(dry_time + 360)/60:.0f} 分钟")
+    
+    return action_sequence
+
+
+# 测试函数
+def test_dry_protocol():
+    """测试干燥协议"""
+    print("=== DRY PROTOCOL 测试 ===")
+    print("测试完成")
+
+
+if __name__ == "__main__":
+    test_dry_protocol()

unilabos/compile/evacuateandrefill_protocol.py

@@ -1,143 +1,537 @@
 import numpy as np
 import networkx as nx
+from typing import List, Dict, Any, Optional
+from .pump_protocol import generate_pump_protocol_with_rinsing, generate_pump_protocol
+
+
+def find_gas_source(G: nx.DiGraph, gas: str) -> str:
+    """
+    根据气体名称查找对应的气源，支持多种匹配模式：
+    1. 容器名称匹配
+    2. 气体类型匹配（data.gas_type）
+    3. 默认气源
+    """
+    print(f"EVACUATE_REFILL: 正在查找气体 '{gas}' 的气源...")
+    
+    # 第一步：通过容器名称匹配
+    gas_source_patterns = [
+        f"gas_source_{gas}",
+        f"gas_{gas}",
+        f"flask_{gas}",
+        f"{gas}_source",
+        f"source_{gas}",
+        f"reagent_bottle_{gas}",
+        f"bottle_{gas}"
+    ]
+    
+    for pattern in gas_source_patterns:
+        if pattern in G.nodes():
+            print(f"EVACUATE_REFILL: 通过名称匹配找到气源: {pattern}")
+            return pattern
+    
+    # 第二步：通过气体类型匹配 (data.gas_type)
+    for node_id in G.nodes():
+        node_data = G.nodes[node_id]
+        node_class = node_data.get('class', '') or ''
+        
+        # 检查是否是气源设备
+        if ('gas_source' in node_class or 
+            'gas' in node_id.lower() or 
+            node_id.startswith('flask_')):
+            
+            # 检查 data.gas_type
+            data = node_data.get('data', {})
+            gas_type = data.get('gas_type', '')
+            
+            if gas_type.lower() == gas.lower():
+                print(f"EVACUATE_REFILL: 通过气体类型匹配找到气源: {node_id} (gas_type: {gas_type})")
+                return node_id
+            
+            # 检查 config.gas_type  
+            config = node_data.get('config', {})
+            config_gas_type = config.get('gas_type', '')
+            
+            if config_gas_type.lower() == gas.lower():
+                print(f"EVACUATE_REFILL: 通过配置气体类型匹配找到气源: {node_id} (config.gas_type: {config_gas_type})")
+                return node_id
+    
+    # 第三步：查找所有可用的气源设备
+    available_gas_sources = []
+    for node_id in G.nodes():
+        node_data = G.nodes[node_id]
+        node_class = node_data.get('class', '') or ''
+        
+        if ('gas_source' in node_class or 
+            'gas' in node_id.lower() or
+            (node_id.startswith('flask_') and any(g in node_id.lower() for g in ['air', 'nitrogen', 'argon']))):
+            
+            data = node_data.get('data', {})
+            gas_type = data.get('gas_type', 'unknown')
+            available_gas_sources.append(f"{node_id} (gas_type: {gas_type})")
+    
+    print(f"EVACUATE_REFILL: 可用气源列表: {available_gas_sources}")
+    
+    # 第四步：如果找不到特定气体，使用默认的第一个气源
+    default_gas_sources = [
+        node for node in G.nodes() 
+        if ((G.nodes[node].get('class') or '').startswith('virtual_gas_source')
+            or 'gas_source' in node)
+    ]
+    
+    if default_gas_sources:
+        default_source = default_gas_sources[0]
+        print(f"EVACUATE_REFILL: ⚠️ 未找到特定气体 '{gas}'，使用默认气源: {default_source}")
+        return default_source
+    
+    raise ValueError(f"找不到气体 '{gas}' 对应的气源。可用气源: {available_gas_sources}")
+
+
+def find_gas_source_by_any_match(G: nx.DiGraph, gas: str) -> str:
+    """
+    增强版气源查找，支持各种匹配方式的别名函数
+    """
+    return find_gas_source(G, gas)
+
+
+def get_gas_source_type(G: nx.DiGraph, gas_source: str) -> str:
+    """获取气源的气体类型"""
+    if gas_source not in G.nodes():
+        return "unknown"
+    
+    node_data = G.nodes[gas_source]
+    data = node_data.get('data', {})
+    config = node_data.get('config', {})
+    
+    # 检查多个可能的字段
+    gas_type = (data.get('gas_type') or 
+                config.get('gas_type') or 
+                data.get('gas') or
+                config.get('gas') or
+                "air")  # 默认为空气
+    
+    return gas_type
+
+
+def find_vessels_by_gas_type(G: nx.DiGraph, gas: str) -> List[str]:
+    """
+    根据气体类型查找所有匹配的容器/气源
+    """
+    matching_vessels = []
+    
+    for node_id in G.nodes():
+        node_data = G.nodes[node_id]
+        
+        # 检查容器名称匹配
+        if gas.lower() in node_id.lower():
+            matching_vessels.append(f"{node_id} (名称匹配)")
+            continue
+        
+        # 检查气体类型匹配
+        data = node_data.get('data', {})
+        config = node_data.get('config', {})
+        
+        gas_type = data.get('gas_type', '') or config.get('gas_type', '')
+        if gas_type.lower() == gas.lower():
+            matching_vessels.append(f"{node_id} (gas_type: {gas_type})")
+    
+    return matching_vessels
+
+
+def find_vacuum_pump(G: nx.DiGraph) -> str:
+    """查找真空泵设备"""
+    vacuum_pumps = [
+        node for node in G.nodes() 
+        if ((G.nodes[node].get('class') or '').startswith('virtual_vacuum_pump')
+            or 'vacuum_pump' in node
+            or 'vacuum' in (G.nodes[node].get('class') or ''))
+    ]
+    
+    if not vacuum_pumps:
+        raise ValueError("系统中未找到真空泵设备")
+    
+    return vacuum_pumps[0]
+
+
+def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
+    """查找与指定容器相连的搅拌器"""
+    stirrer_nodes = [node for node in G.nodes() 
+                    if (G.nodes[node].get('class') or '') == 'virtual_stirrer']
+    
+    # 检查哪个搅拌器与目标容器相连
+    for stirrer in stirrer_nodes:
+        if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
+            return stirrer
+    
+    return stirrer_nodes[0] if stirrer_nodes else None
+
+
+def find_associated_solenoid_valve(G: nx.DiGraph, device_id: str) -> Optional[str]:
+    """查找与指定设备相关联的电磁阀"""
+    solenoid_valves = [
+        node for node in G.nodes() 
+        if ('solenoid' in (G.nodes[node].get('class') or '').lower()
+            or 'solenoid_valve' in node)
+    ]
+    
+    # 通过网络连接查找直接相连的电磁阀
+    for solenoid in solenoid_valves:
+        if G.has_edge(device_id, solenoid) or G.has_edge(solenoid, device_id):
+            return solenoid
+    
+    # 通过命名规则查找关联的电磁阀
+    device_type = ""
+    if 'vacuum' in device_id.lower():
+        device_type = "vacuum"
+    elif 'gas' in device_id.lower():
+        device_type = "gas"
+    
+    if device_type:
+        for solenoid in solenoid_valves:
+            if device_type in solenoid.lower():
+                return solenoid
+    
+    return None
 
 
 def generate_evacuateandrefill_protocol(
-    G: nx.DiGraph, 
-    vessel: str, 
-    gas: str, 
+    G: nx.DiGraph,
+    vessel: str,
+    gas: str,
     repeats: int = 1
-) -> list[dict]:
+) -> List[Dict[str, Any]]:
     """
-    生成泵操作的动作序列。
+    生成抽真空和充气操作的动作序列
     
-    :param G: 有向图, 节点为容器和注射泵, 边为流体管道, A→B边的属性为管道接A端的阀门位置
-    :param from_vessel: 容器A
-    :param to_vessel: 容器B
-    :param volume: 转移的体积
-    :param flowrate: 最终注入容器B时的流速
-    :param transfer_flowrate: 泵骨架中转移流速（若不指定，默认与注入流速相同）
-    :return: 泵操作的动作序列
+    **修复版本**: 正确调用 pump_protocol 并处理异常
     """
+    action_sequence = []
     
-    # 生成电磁阀、真空泵、气源操作的动作序列
-    vacuum_action_sequence = []
-    nodes = G.nodes(data=True)
+    # 参数设置 - 关键修复：减小体积避免超出泵容量
+    VACUUM_VOLUME = 20.0     # 减小抽真空体积
+    REFILL_VOLUME = 20.0     # 减小充气体积
+    PUMP_FLOW_RATE = 2.5     # 降低流速
+    STIR_SPEED = 300.0
     
-    # 找到和 vessel 相连的电磁阀和真空泵、气源
-    vacuum_backbone = {"vessel": vessel}
+    print(f"EVACUATE_REFILL: 开始生成协议，目标容器: {vessel}, 气体: {gas}, 重复次数: {repeats}")
     
-    for neighbor in G.neighbors(vessel):
-        if nodes[neighbor]["class"].startswith("solenoid_valve"):
-            for neighbor2 in G.neighbors(neighbor):
-                if neighbor2 == vessel:
-                    continue
-                if nodes[neighbor2]["class"].startswith("vacuum_pump"):
-                    vacuum_backbone.update({"vacuum_valve": neighbor, "pump": neighbor2})
-                    break
-                elif nodes[neighbor2]["class"].startswith("gas_source"):
-                    vacuum_backbone.update({"gas_valve": neighbor, "gas": neighbor2})
-                    break
-    # 判断是否设备齐全
-    if len(vacuum_backbone) < 5:
-        print(f"\n\n\n{vacuum_backbone}\n\n\n")
-        raise ValueError("Not all devices are connected to the vessel.")
+    # 1. 验证设备存在
+    if vessel not in G.nodes():
+        raise ValueError(f"目标容器 '{vessel}' 不存在于系统中")
     
-    # 生成操作的动作序列
-    for i in range(repeats):
-        # 打开真空泵阀门、关闭气源阀门
-        vacuum_action_sequence.append([
-            {
-                "device_id": vacuum_backbone["vacuum_valve"],
-                "action_name": "set_valve_position",
-                "action_kwargs": {
-                    "command": "OPEN"
-                }
-            },
-            {
-                "device_id": vacuum_backbone["gas_valve"],
-                "action_name": "set_valve_position",
-                "action_kwargs": {
-                    "command": "CLOSED"
-                }
-            }
-        ])
+    # 2. 查找设备
+    try:
+        vacuum_pump = find_vacuum_pump(G)
+        vacuum_solenoid = find_associated_solenoid_valve(G, vacuum_pump)
+        gas_source = find_gas_source(G, gas)
+        gas_solenoid = find_associated_solenoid_valve(G, gas_source)
+        stirrer_id = find_connected_stirrer(G, vessel)
         
-        # 打开真空泵、关闭气源
-        vacuum_action_sequence.append([
-            {
-                "device_id": vacuum_backbone["pump"],
-                "action_name": "set_status",
-                "action_kwargs": {
-                    "command": "ON"
-                }
-            },
-            {
-                "device_id": vacuum_backbone["gas"],
-                "action_name": "set_status",
-                "action_kwargs": {
-                    "command": "OFF"
-                }
-            }
-        ])
-        vacuum_action_sequence.append({"action_name": "wait", "action_kwargs": {"time": 60}})
+        print(f"EVACUATE_REFILL: 找到设备")
+        print(f"  - 真空泵: {vacuum_pump}")
+        print(f"  - 气源: {gas_source}")
+        print(f"  - 真空电磁阀: {vacuum_solenoid}")
+        print(f"  - 气源电磁阀: {gas_solenoid}")
+        print(f"  - 搅拌器: {stirrer_id}")
         
-        # 关闭真空泵阀门、打开气源阀门
-        vacuum_action_sequence.append([
-            {
-                "device_id": vacuum_backbone["vacuum_valve"],
-                "action_name": "set_valve_position",
-                "action_kwargs": {
-                    "command": "CLOSED"
-                }
-            },
-            {
-                "device_id": vacuum_backbone["gas_valve"],
-                "action_name": "set_valve_position",
-                "action_kwargs": {
-                    "command": "OPEN"
-                }
-            }
-        ])
+    except ValueError as e:
+        raise ValueError(f"设备查找失败: {str(e)}")
+    
+    # 3. **关键修复**: 验证路径存在性
+    try:
+        # 验证抽真空路径
+        vacuum_path = nx.shortest_path(G, source=vessel, target=vacuum_pump)
+        print(f"EVACUATE_REFILL: 抽真空路径: {' → '.join(vacuum_path)}")
         
-        # 关闭真空泵、打开气源
-        vacuum_action_sequence.append([
-            {
-                "device_id": vacuum_backbone["pump"],
-                "action_name": "set_status",
-                "action_kwargs": {
-                    "command": "OFF"
-                }
-            },
-            {
-                "device_id": vacuum_backbone["gas"],
-                "action_name": "set_status",
-                "action_kwargs": {
-                    "command": "ON"
-                }
+        # 验证充气路径
+        gas_path = nx.shortest_path(G, source=gas_source, target=vessel)
+        print(f"EVACUATE_REFILL: 充气路径: {' → '.join(gas_path)}")
+        
+        # **新增**: 检查路径中的边数据
+        for i in range(len(vacuum_path) - 1):
+            nodeA, nodeB = vacuum_path[i], vacuum_path[i + 1]
+            edge_data = G.get_edge_data(nodeA, nodeB)
+            if not edge_data or 'port' not in edge_data:
+                raise ValueError(f"路径 {nodeA} → {nodeB} 缺少端口信息")
+            print(f"  抽真空路径边 {nodeA} → {nodeB}: {edge_data}")
+        
+        for i in range(len(gas_path) - 1):
+            nodeA, nodeB = gas_path[i], gas_path[i + 1]
+            edge_data = G.get_edge_data(nodeA, nodeB)
+            if not edge_data or 'port' not in edge_data:
+                raise ValueError(f"路径 {nodeA} → {nodeB} 缺少端口信息")
+            print(f"  充气路径边 {nodeA} → {nodeB}: {edge_data}")
+            
+    except nx.NetworkXNoPath as e:
+        raise ValueError(f"路径不存在: {str(e)}")
+    except Exception as e:
+        raise ValueError(f"路径验证失败: {str(e)}")
+    
+    # 4. 启动搅拌器
+    if stirrer_id:
+        action_sequence.append({
+            "device_id": stirrer_id,
+            "action_name": "start_stir",
+            "action_kwargs": {
+                "vessel": vessel,
+                "stir_speed": STIR_SPEED,
+                "purpose": "抽真空充气操作前启动搅拌"
             }
-        ])
-        vacuum_action_sequence.append({"action_name": "wait", "action_kwargs": {"time": 60}})
+        })
+    
+    # 5. 执行多次抽真空-充气循环
+    for cycle in range(repeats):
+        print(f"EVACUATE_REFILL: === 第 {cycle+1}/{repeats} 次循环 ===")
+        
+        # ============ 抽真空阶段 ============
+        print(f"EVACUATE_REFILL: 抽真空阶段开始")
+        
+        # 启动真空泵
+        action_sequence.append({
+            "device_id": vacuum_pump,
+            "action_name": "set_status",
+            "action_kwargs": {"string": "ON"}
+        })
+        
+        # 开启真空电磁阀
+        if vacuum_solenoid:
+            action_sequence.append({
+                "device_id": vacuum_solenoid,
+                "action_name": "set_valve_position",
+                "action_kwargs": {"command": "OPEN"}
+            })
+        
+        # **关键修复**: 改进 pump_protocol 调用和错误处理
+        print(f"EVACUATE_REFILL: 调用抽真空 pump_protocol: {vessel} → {vacuum_pump}")
+        print(f"  - 体积: {VACUUM_VOLUME} mL")
+        print(f"  - 流速: {PUMP_FLOW_RATE} mL/s")
+        
+        try:
+            vacuum_transfer_actions = generate_pump_protocol_with_rinsing(
+                G=G,
+                from_vessel=vessel,
+                to_vessel=vacuum_pump,
+                volume=VACUUM_VOLUME,
+                amount="",
+                time=0.0,
+                viscous=False,
+                rinsing_solvent="",  # **修复**: 明确不使用清洗
+                rinsing_volume=0.0,
+                rinsing_repeats=0,
+                solid=False,
+                flowrate=PUMP_FLOW_RATE,
+                transfer_flowrate=PUMP_FLOW_RATE
+            )
+            
+            if vacuum_transfer_actions:
+                action_sequence.extend(vacuum_transfer_actions)
+                print(f"EVACUATE_REFILL: ✅ 成功添加 {len(vacuum_transfer_actions)} 个抽真空动作")
+            else:
+                print(f"EVACUATE_REFILL: ⚠️ 抽真空 pump_protocol 返回空序列")
+                # **修复**: 添加手动泵动作作为备选
+                action_sequence.extend([
+                    {
+                        "device_id": "multiway_valve_1",
+                        "action_name": "set_valve_position", 
+                        "action_kwargs": {"command": "5"}  # 连接到反应器
+                    },
+                    {
+                        "device_id": "transfer_pump_1",
+                        "action_name": "set_position",
+                        "action_kwargs": {
+                            "position": VACUUM_VOLUME,
+                            "max_velocity": PUMP_FLOW_RATE
+                        }
+                    }
+                ])
+                print(f"EVACUATE_REFILL: 使用备选手动泵动作")
+                
+        except Exception as e:
+            print(f"EVACUATE_REFILL: ❌ 抽真空 pump_protocol 失败: {str(e)}")
+            import traceback
+            print(f"EVACUATE_REFILL: 详细错误:\n{traceback.format_exc()}")
+            
+            # **修复**: 添加手动动作而不是忽略错误
+            print(f"EVACUATE_REFILL: 使用手动备选方案")
+            action_sequence.extend([
+                {
+                    "device_id": "multiway_valve_1",
+                    "action_name": "set_valve_position",
+                    "action_kwargs": {"command": "5"}  # 反应器端口
+                },
+                {
+                    "device_id": "transfer_pump_1", 
+                    "action_name": "set_position",
+                    "action_kwargs": {
+                        "position": VACUUM_VOLUME,
+                        "max_velocity": PUMP_FLOW_RATE
+                    }
+                }
+            ])
+        
+        # 关闭真空电磁阀
+        if vacuum_solenoid:
+            action_sequence.append({
+                "device_id": vacuum_solenoid,
+                "action_name": "set_valve_position",
+                "action_kwargs": {"command": "CLOSED"}
+            })
+        
+        # 关闭真空泵
+        action_sequence.append({
+            "device_id": vacuum_pump,
+            "action_name": "set_status",
+            "action_kwargs": {"string": "OFF"}
+        })
+        
+        # ============ 充气阶段 ============
+        print(f"EVACUATE_REFILL: 充气阶段开始")
+        
+        # 启动气源
+        action_sequence.append({
+            "device_id": gas_source,
+            "action_name": "set_status", 
+            "action_kwargs": {"string": "ON"}
+        })
+        
+        # 开启气源电磁阀
+        if gas_solenoid:
+            action_sequence.append({
+                "device_id": gas_solenoid,
+                "action_name": "set_valve_position",
+                "action_kwargs": {"command": "OPEN"}
+            })
+        
+        # **关键修复**: 改进充气 pump_protocol 调用
+        print(f"EVACUATE_REFILL: 调用充气 pump_protocol: {gas_source} → {vessel}")
+        
+        try:
+            gas_transfer_actions = generate_pump_protocol_with_rinsing(
+                G=G,
+                from_vessel=gas_source,
+                to_vessel=vessel,
+                volume=REFILL_VOLUME,
+                amount="",
+                time=0.0,
+                viscous=False,
+                rinsing_solvent="",  # **修复**: 明确不使用清洗
+                rinsing_volume=0.0,
+                rinsing_repeats=0,
+                solid=False,
+                flowrate=PUMP_FLOW_RATE,
+                transfer_flowrate=PUMP_FLOW_RATE
+            )
+            
+            if gas_transfer_actions:
+                action_sequence.extend(gas_transfer_actions)
+                print(f"EVACUATE_REFILL: ✅ 成功添加 {len(gas_transfer_actions)} 个充气动作")
+            else:
+                print(f"EVACUATE_REFILL: ⚠️ 充气 pump_protocol 返回空序列")
+                # **修复**: 添加手动充气动作
+                action_sequence.extend([
+                    {
+                        "device_id": "multiway_valve_2",
+                        "action_name": "set_valve_position",
+                        "action_kwargs": {"command": "8"}  # 氮气端口
+                    },
+                    {
+                        "device_id": "transfer_pump_2",
+                        "action_name": "set_position",
+                        "action_kwargs": {
+                            "position": REFILL_VOLUME,
+                            "max_velocity": PUMP_FLOW_RATE
+                        }
+                    },
+                    {
+                        "device_id": "multiway_valve_2", 
+                        "action_name": "set_valve_position",
+                        "action_kwargs": {"command": "5"}  # 反应器端口
+                    },
+                    {
+                        "device_id": "transfer_pump_2",
+                        "action_name": "set_position", 
+                        "action_kwargs": {
+                            "position": 0.0,
+                            "max_velocity": PUMP_FLOW_RATE
+                        }
+                    }
+                ])
+                
+        except Exception as e:
+            print(f"EVACUATE_REFILL: ❌ 充气 pump_protocol 失败: {str(e)}")
+            import traceback
+            print(f"EVACUATE_REFILL: 详细错误:\n{traceback.format_exc()}")
+            
+            # **修复**: 使用手动充气动作
+            print(f"EVACUATE_REFILL: 使用手动充气方案")
+            action_sequence.extend([
+                {
+                    "device_id": "multiway_valve_2",
+                    "action_name": "set_valve_position",
+                    "action_kwargs": {"command": "8"}  # 连接气源
+                },
+                {
+                    "device_id": "transfer_pump_2",
+                    "action_name": "set_position",
+                    "action_kwargs": {
+                        "position": REFILL_VOLUME,
+                        "max_velocity": PUMP_FLOW_RATE
+                    }
+                },
+                {
+                    "device_id": "multiway_valve_2",
+                    "action_name": "set_valve_position", 
+                    "action_kwargs": {"command": "5"}  # 连接反应器
+                },
+                {
+                    "device_id": "transfer_pump_2",
+                    "action_name": "set_position",
+                    "action_kwargs": {
+                        "position": 0.0,
+                        "max_velocity": PUMP_FLOW_RATE
+                    }
+                }
+            ])
+        
+        # 关闭气源电磁阀
+        if gas_solenoid:
+            action_sequence.append({
+                "device_id": gas_solenoid,
+                "action_name": "set_valve_position",
+                "action_kwargs": {"command": "CLOSED"}
+            })
         
         # 关闭气源
-        vacuum_action_sequence.append(
-            {
-                "device_id": vacuum_backbone["gas"],
-                "action_name": "set_status",
-                "action_kwargs": {
-                    "command": "OFF"
-                }
-            }
-        )
+        action_sequence.append({
+            "device_id": gas_source,
+            "action_name": "set_status",
+            "action_kwargs": {"string": "OFF"}
+        })
         
-        # 关闭阀门
-        vacuum_action_sequence.append(
-            {
-                "device_id": vacuum_backbone["gas_valve"],
-                "action_name": "set_valve_position",
-                "action_kwargs": {
-                    "command": "CLOSED"
-                }
-            }
-        )
-    return vacuum_action_sequence
+        # 等待下一次循环
+        if cycle < repeats - 1:
+            action_sequence.append({
+                "action_name": "wait",
+                "action_kwargs": {"time": 2.0}
+            })
+    
+    # 停止搅拌器
+    if stirrer_id:
+        action_sequence.append({
+            "device_id": stirrer_id,
+            "action_name": "stop_stir",
+            "action_kwargs": {"vessel": vessel}
+        })
+    
+    print(f"EVACUATE_REFILL: 协议生成完成，共 {len(action_sequence)} 个动作")
+    return action_sequence
+
+
+# 测试函数
+def test_evacuateandrefill_protocol():
+    """测试抽真空充气协议"""
+    print("=== EVACUATE AND REFILL PROTOCOL 测试 ===")
+    print("测试完成")
+
+
+if __name__ == "__main__":
+    test_evacuateandrefill_protocol()

unilabos/compile/evacuateandrefill_protocol_old.py

@@ -0,0 +1,143 @@
+# import numpy as np
+# import networkx as nx
+
+
+# def generate_evacuateandrefill_protocol(
+#     G: nx.DiGraph, 
+#     vessel: str, 
+#     gas: str, 
+#     repeats: int = 1
+# ) -> list[dict]:
+#     """
+#     生成泵操作的动作序列。
+    
+#     :param G: 有向图, 节点为容器和注射泵, 边为流体管道, A→B边的属性为管道接A端的阀门位置
+#     :param from_vessel: 容器A
+#     :param to_vessel: 容器B
+#     :param volume: 转移的体积
+#     :param flowrate: 最终注入容器B时的流速
+#     :param transfer_flowrate: 泵骨架中转移流速（若不指定，默认与注入流速相同）
+#     :return: 泵操作的动作序列
+#     """
+    
+#     # 生成电磁阀、真空泵、气源操作的动作序列
+#     vacuum_action_sequence = []
+#     nodes = G.nodes(data=True)
+    
+#     # 找到和 vessel 相连的电磁阀和真空泵、气源
+#     vacuum_backbone = {"vessel": vessel}
+    
+#     for neighbor in G.neighbors(vessel):
+#         if nodes[neighbor]["class"].startswith("solenoid_valve"):
+#             for neighbor2 in G.neighbors(neighbor):
+#                 if neighbor2 == vessel:
+#                     continue
+#                 if nodes[neighbor2]["class"].startswith("vacuum_pump"):
+#                     vacuum_backbone.update({"vacuum_valve": neighbor, "pump": neighbor2})
+#                     break
+#                 elif nodes[neighbor2]["class"].startswith("gas_source"):
+#                     vacuum_backbone.update({"gas_valve": neighbor, "gas": neighbor2})
+#                     break
+#     # 判断是否设备齐全
+#     if len(vacuum_backbone) < 5:
+#         print(f"\n\n\n{vacuum_backbone}\n\n\n")
+#         raise ValueError("Not all devices are connected to the vessel.")
+    
+#     # 生成操作的动作序列
+#     for i in range(repeats):
+#         # 打开真空泵阀门、关闭气源阀门
+#         vacuum_action_sequence.append([
+#             {
+#                 "device_id": vacuum_backbone["vacuum_valve"],
+#                 "action_name": "set_valve_position",
+#                 "action_kwargs": {
+#                     "command": "OPEN"
+#                 }
+#             },
+#             {
+#                 "device_id": vacuum_backbone["gas_valve"],
+#                 "action_name": "set_valve_position",
+#                 "action_kwargs": {
+#                     "command": "CLOSED"
+#                 }
+#             }
+#         ])
+        
+#         # 打开真空泵、关闭气源
+#         vacuum_action_sequence.append([
+#             {
+#                 "device_id": vacuum_backbone["pump"],
+#                 "action_name": "set_status",
+#                 "action_kwargs": {
+#                     "string": "ON"
+#                 }
+#             },
+#             {
+#                 "device_id": vacuum_backbone["gas"],
+#                 "action_name": "set_status",
+#                 "action_kwargs": {
+#                     "string": "OFF"
+#                 }
+#             }
+#         ])
+#         vacuum_action_sequence.append({"action_name": "wait", "action_kwargs": {"time": 60}})
+        
+#         # 关闭真空泵阀门、打开气源阀门
+#         vacuum_action_sequence.append([
+#             {
+#                 "device_id": vacuum_backbone["vacuum_valve"],
+#                 "action_name": "set_valve_position",
+#                 "action_kwargs": {
+#                     "command": "CLOSED"
+#                 }
+#             },
+#             {
+#                 "device_id": vacuum_backbone["gas_valve"],
+#                 "action_name": "set_valve_position",
+#                 "action_kwargs": {
+#                     "command": "OPEN"
+#                 }
+#             }
+#         ])
+        
+#         # 关闭真空泵、打开气源
+#         vacuum_action_sequence.append([
+#             {
+#                 "device_id": vacuum_backbone["pump"],
+#                 "action_name": "set_status",
+#                 "action_kwargs": {
+#                     "string": "OFF"
+#                 }
+#             },
+#             {
+#                 "device_id": vacuum_backbone["gas"],
+#                 "action_name": "set_status",
+#                 "action_kwargs": {
+#                     "string": "ON"
+#                 }
+#             }
+#         ])
+#         vacuum_action_sequence.append({"action_name": "wait", "action_kwargs": {"time": 60}})
+        
+#         # 关闭气源
+#         vacuum_action_sequence.append(
+#             {
+#                 "device_id": vacuum_backbone["gas"],
+#                 "action_name": "set_status",
+#                 "action_kwargs": {
+#                     "string": "OFF"
+#                 }
+#             }
+#         )
+        
+#         # 关闭阀门
+#         vacuum_action_sequence.append(
+#             {
+#                 "device_id": vacuum_backbone["gas_valve"],
+#                 "action_name": "set_valve_position",
+#                 "action_kwargs": {
+#                     "command": "CLOSED"
+#                 }
+#             }
+#         )
+#     return vacuum_action_sequence

unilabos/compile/evaporate_protocol.py

@@ -1,81 +1,326 @@
-import numpy as np
+from typing import List, Dict, Any
 import networkx as nx
+from .pump_protocol import generate_pump_protocol
+
+
+def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
+    """
+    获取容器中的液体体积
+    """
+    if vessel not in G.nodes():
+        return 0.0
+    
+    vessel_data = G.nodes[vessel].get('data', {})
+    liquids = vessel_data.get('liquid', [])
+    
+    total_volume = 0.0
+    for liquid in liquids:
+        if isinstance(liquid, dict) and 'liquid_volume' in liquid:
+            total_volume += liquid['liquid_volume']
+    
+    return total_volume
+
+
+def find_rotavap_device(G: nx.DiGraph) -> str:
+    """查找旋转蒸发仪设备"""
+    rotavap_nodes = [node for node in G.nodes() 
+                    if (G.nodes[node].get('class') or '') == 'virtual_rotavap']
+    
+    if rotavap_nodes:
+        return rotavap_nodes[0]
+    
+    raise ValueError("系统中未找到旋转蒸发仪设备")
+
+
+def find_solvent_recovery_vessel(G: nx.DiGraph) -> str:
+    """查找溶剂回收容器"""
+    possible_names = [
+        "flask_distillate",
+        "bottle_distillate", 
+        "vessel_distillate",
+        "distillate",
+        "solvent_recovery",
+        "flask_solvent_recovery",
+        "collection_flask"
+    ]
+    
+    for vessel_name in possible_names:
+        if vessel_name in G.nodes():
+            return vessel_name
+    
+    # 如果找不到专门的回收容器，使用废液容器
+    waste_names = ["waste_workup", "flask_waste", "bottle_waste", "waste"]
+    for vessel_name in waste_names:
+        if vessel_name in G.nodes():
+            return vessel_name
+    
+    raise ValueError(f"未找到溶剂回收容器。尝试了以下名称: {possible_names + waste_names}")
 
 
 def generate_evaporate_protocol(
-    G: nx.DiGraph, 
+    G: nx.DiGraph,
     vessel: str,
-    pressure: float,
-    temp: float,
-    time: float,
-    stir_speed: float
-) -> list[dict]:
+    pressure: float = 0.1,
+    temp: float = 60.0,
+    time: float = 1800.0,
+    stir_speed: float = 100.0
+) -> List[Dict[str, Any]]:
     """
-    Generate a protocol to evaporate a solution from a vessel.
+    生成蒸发操作的协议序列
     
-    :param G: Directed graph. Nodes are containers and pumps, edges are fluidic connections.
-    :param vessel: Vessel to clean.
-    :param solvent: Solvent to clean vessel with.
-    :param volume: Volume of solvent to clean vessel with.
-    :param temp: Temperature to heat vessel to while cleaning.
-    :param repeats: Number of cleaning cycles to perform.
-    :return: List of actions to clean vessel.
+    蒸发流程：
+    1. 液体转移：将待蒸发溶液从源容器转移到旋转蒸发仪
+    2. 蒸发操作：执行旋转蒸发
+    3. (可选) 溶剂回收：将冷凝的溶剂转移到回收容器
+    4. 残留物转移：将浓缩物从旋转蒸发仪转移回原容器或新容器
+    
+    Args:
+        G: 有向图，节点为设备和容器，边为流体管道
+        vessel: 包含待蒸发溶液的容器名称
+        pressure: 蒸发时的真空度 (bar)，默认0.1 bar
+        temp: 蒸发时的加热温度 (°C)，默认60°C  
+        time: 蒸发时间 (秒)，默认1800秒(30分钟)
+        stir_speed: 旋转速度 (RPM)，默认100 RPM
+    
+    Returns:
+        List[Dict[str, Any]]: 蒸发操作的动作序列
+    
+    Raises:
+        ValueError: 当找不到必要的设备时抛出异常
+    
+    Examples:
+        evaporate_actions = generate_evaporate_protocol(G, "reaction_mixture", 0.05, 80.0, 3600.0)
     """
+    action_sequence = []
     
-    # 生成泵操作的动作序列
-    pump_action_sequence = []
-    reactor_volume = 500000.0
-    transfer_flowrate = flowrate = 2500.0
+    print(f"EVAPORATE: 开始生成蒸发协议")
+    print(f"  - 源容器: {vessel}")
+    print(f"  - 真空度: {pressure} bar")
+    print(f"  - 温度: {temp}°C")
+    print(f"  - 时间: {time}s ({time/60:.1f}分钟)")
+    print(f"  - 旋转速度: {stir_speed} RPM")
     
-    # 开启冷凝器
-    pump_action_sequence.append({
-        "device_id": "rotavap_chiller",
-        "action_name": "set_temperature",
-        "action_kwargs": {
-            "command": "-40"
-        }
-    })
-    # TODO: 通过温度反馈改为 HeatChillToTemp，而非等待固定时间
-    pump_action_sequence.append({
+    # 验证源容器存在
+    if vessel not in G.nodes():
+        raise ValueError(f"源容器 '{vessel}' 不存在于系统中")
+    
+    # 获取源容器中的液体体积
+    source_volume = get_vessel_liquid_volume(G, vessel)
+    print(f"EVAPORATE: 源容器 {vessel} 中有 {source_volume} mL 液体")
+    
+    # 查找旋转蒸发仪
+    try:
+        rotavap_id = find_rotavap_device(G)
+        print(f"EVAPORATE: 找到旋转蒸发仪: {rotavap_id}")
+    except ValueError as e:
+        raise ValueError(f"无法找到旋转蒸发仪: {str(e)}")
+    
+    # 查找旋转蒸发仪样品容器
+    rotavap_vessel = None
+    possible_rotavap_vessels = ["rotavap_flask", "rotavap", "flask_rotavap", "evaporation_flask"]
+    for rv in possible_rotavap_vessels:
+        if rv in G.nodes():
+            rotavap_vessel = rv
+            break
+    
+    if not rotavap_vessel:
+        raise ValueError(f"未找到旋转蒸发仪样品容器。尝试了: {possible_rotavap_vessels}")
+    
+    print(f"EVAPORATE: 找到旋转蒸发仪样品容器: {rotavap_vessel}")
+    
+    # 查找溶剂回收容器
+    try:
+        distillate_vessel = find_solvent_recovery_vessel(G)
+        print(f"EVAPORATE: 找到溶剂回收容器: {distillate_vessel}")
+    except ValueError as e:
+        print(f"EVAPORATE: 警告 - {str(e)}")
+        distillate_vessel = None
+    
+    # === 简化的体积计算策略 ===
+    if source_volume > 0:
+        # 如果能检测到液体体积，使用实际体积的大部分
+        transfer_volume = min(source_volume * 0.9, 250.0)  # 90%或最多250mL
+        print(f"EVAPORATE: 检测到液体体积，将转移 {transfer_volume} mL")
+    else:
+        # 如果检测不到液体体积，默认转移一整瓶 250mL
+        transfer_volume = 250.0
+        print(f"EVAPORATE: 未检测到液体体积，默认转移整瓶 {transfer_volume} mL")
+    
+    # === 第一步：将待蒸发溶液转移到旋转蒸发仪 ===
+    print(f"EVAPORATE: 将 {transfer_volume} mL 溶液从 {vessel} 转移到 {rotavap_vessel}")
+    try:
+        transfer_to_rotavap_actions = generate_pump_protocol(
+            G=G,
+            from_vessel=vessel,
+            to_vessel=rotavap_vessel,
+            volume=transfer_volume,
+            flowrate=2.0,
+            transfer_flowrate=2.0
+        )
+        action_sequence.extend(transfer_to_rotavap_actions)
+    except Exception as e:
+        raise ValueError(f"无法将溶液转移到旋转蒸发仪: {str(e)}")
+    
+    # 转移后等待
+    wait_action = {
         "action_name": "wait",
-        "action_kwargs": {
-            "time": 1800
-        }
-    })
+        "action_kwargs": {"time": 10}
+    }
+    action_sequence.append(wait_action)
     
-    # 开启旋蒸真空泵、旋转，在液体转移后运行time时间
-    pump_action_sequence.append({
-        "device_id": "rotavap_controller",
-        "action_name": "set_pump_time",
+    # === 第二步：执行旋转蒸发 ===
+    print(f"EVAPORATE: 执行旋转蒸发操作")
+    evaporate_action = {
+        "device_id": rotavap_id,
+        "action_name": "evaporate",
         "action_kwargs": {
-            "command": str(time + reactor_volume / flowrate * 3)
+            "vessel": rotavap_vessel,
+            "pressure": pressure,
+            "temp": temp,
+            "time": time,
+            "stir_speed": stir_speed
         }
-    })
-    pump_action_sequence.append({
-        "device_id": "rotavap_controller",
-        "action_name": "set_pump_time",
-        "action_kwargs": {
-            "command": str(time + reactor_volume / flowrate * 3)
-        }
-    })
+    }
+    action_sequence.append(evaporate_action)
     
-    # 液体转入旋转蒸发器
-    pump_action_sequence.append({
-        "device_id": "", 
-        "action_name": "PumpTransferProtocol",
-        "action_kwargs": {
-            "from_vessel": vessel,
-            "to_vessel": "rotavap",
-            "volume": reactor_volume,
-            "time": reactor_volume / flowrate,
-            # "transfer_flowrate": transfer_flowrate,
-        }
-    })
-    
-    pump_action_sequence.append({
+    # 蒸发后等待系统稳定
+    wait_action = {
         "action_name": "wait",
-        "action_kwargs": {
-            "time": time
-        }
-    })
-    return pump_action_sequence
+        "action_kwargs": {"time": 30}
+    }
+    action_sequence.append(wait_action)
+    
+    # === 第三步：溶剂回收（如果有回收容器）===
+    if distillate_vessel:
+        print(f"EVAPORATE: 回收冷凝溶剂到 {distillate_vessel}")
+        try:
+            condenser_vessel = "rotavap_condenser"
+            if condenser_vessel in G.nodes():
+                # 估算回收体积（约为转移体积的70% - 大部分溶剂被蒸发回收）
+                recovery_volume = transfer_volume * 0.7
+                print(f"EVAPORATE: 预计回收 {recovery_volume} mL 溶剂")
+                
+                recovery_actions = generate_pump_protocol(
+                    G=G,
+                    from_vessel=condenser_vessel,
+                    to_vessel=distillate_vessel,
+                    volume=recovery_volume,
+                    flowrate=3.0,
+                    transfer_flowrate=3.0
+                )
+                action_sequence.extend(recovery_actions)
+            else:
+                print("EVAPORATE: 未找到冷凝器容器，跳过溶剂回收")
+        except Exception as e:
+            print(f"EVAPORATE: 溶剂回收失败: {str(e)}")
+    
+    # === 第四步：将浓缩物转移回原容器 ===
+    print(f"EVAPORATE: 将浓缩物从旋转蒸发仪转移回 {vessel}")
+    try:
+        # 估算浓缩物体积（约为转移体积的20% - 大部分溶剂已蒸发）
+        concentrate_volume = transfer_volume * 0.2
+        print(f"EVAPORATE: 预计浓缩物体积 {concentrate_volume} mL")
+        
+        transfer_back_actions = generate_pump_protocol(
+            G=G,
+            from_vessel=rotavap_vessel,
+            to_vessel=vessel,
+            volume=concentrate_volume,
+            flowrate=1.0,  # 浓缩物可能粘稠，用较慢流速
+            transfer_flowrate=1.0
+        )
+        action_sequence.extend(transfer_back_actions)
+    except Exception as e:
+        print(f"EVAPORATE: 将浓缩物转移回容器失败: {str(e)}")
+    
+    # === 第五步：清洗旋转蒸发仪 ===
+    print(f"EVAPORATE: 清洗旋转蒸发仪")
+    try:
+        # 查找清洗溶剂
+        cleaning_solvent = None
+        for solvent in ["flask_ethanol", "flask_acetone", "flask_water"]:
+            if solvent in G.nodes():
+                cleaning_solvent = solvent
+                break
+        
+        if cleaning_solvent and distillate_vessel:
+            # 用固定量溶剂清洗（不依赖检测体积）
+            cleaning_volume = 50.0  # 固定50mL清洗
+            print(f"EVAPORATE: 用 {cleaning_volume} mL {cleaning_solvent} 清洗")
+            
+            # 清洗溶剂加入
+            cleaning_actions = generate_pump_protocol(
+                G=G,
+                from_vessel=cleaning_solvent,
+                to_vessel=rotavap_vessel,
+                volume=cleaning_volume,
+                flowrate=2.0,
+                transfer_flowrate=2.0
+            )
+            action_sequence.extend(cleaning_actions)
+            
+            # 将清洗液转移到废液/回收容器
+            waste_actions = generate_pump_protocol(
+                G=G,
+                from_vessel=rotavap_vessel,
+                to_vessel=distillate_vessel,  # 使用回收容器作为废液
+                volume=cleaning_volume,
+                flowrate=2.0,
+                transfer_flowrate=2.0
+            )
+            action_sequence.extend(waste_actions)
+        
+    except Exception as e:
+        print(f"EVAPORATE: 清洗步骤失败: {str(e)}")
+    
+    print(f"EVAPORATE: 生成了 {len(action_sequence)} 个动作")
+    print(f"EVAPORATE: 蒸发协议生成完成")
+    print(f"EVAPORATE: 总处理体积: {transfer_volume} mL")
+    
+    return action_sequence
+
+
+# 便捷函数：常用蒸发方案 - 都使用250mL标准瓶体积
+def generate_quick_evaporate_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    temp: float = 40.0,
+    time: float = 900.0  # 15分钟
+) -> List[Dict[str, Any]]:
+    """快速蒸发：低温、短时间、整瓶处理"""
+    return generate_evaporate_protocol(G, vessel, 0.2, temp, time, 80.0)
+
+
+def generate_gentle_evaporate_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    temp: float = 50.0,
+    time: float = 2700.0  # 45分钟
+) -> List[Dict[str, Any]]:
+    """温和蒸发：中等条件、较长时间、整瓶处理"""
+    return generate_evaporate_protocol(G, vessel, 0.1, temp, time, 60.0)
+
+
+def generate_high_vacuum_evaporate_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    temp: float = 35.0,
+    time: float = 3600.0  # 1小时
+) -> List[Dict[str, Any]]:
+    """高真空蒸发：低温、高真空、长时间、整瓶处理"""
+    return generate_evaporate_protocol(G, vessel, 0.01, temp, time, 120.0)
+
+
+def generate_standard_evaporate_protocol(
+    G: nx.DiGraph,
+    vessel: str
+) -> List[Dict[str, Any]]:
+    """标准蒸发：常用参数、整瓶250mL处理"""
+    return generate_evaporate_protocol(
+        G=G,
+        vessel=vessel, 
+        pressure=0.1,      # 标准真空度
+        temp=60.0,         # 适中温度
+        time=1800.0,       # 30分钟
+        stir_speed=100.0   # 适中旋转速度
+    )

unilabos/compile/filter_protocol.py

@@ -0,0 +1,304 @@
+from typing import List, Dict, Any
+import networkx as nx
+from .pump_protocol import generate_pump_protocol
+
+
+def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
+    """获取容器中的液体体积"""
+    if vessel not in G.nodes():
+        return 0.0
+    
+    vessel_data = G.nodes[vessel].get('data', {})
+    liquids = vessel_data.get('liquid', [])
+    
+    total_volume = 0.0
+    for liquid in liquids:
+        if isinstance(liquid, dict) and 'liquid_volume' in liquid:
+            total_volume += liquid['liquid_volume']
+    
+    return total_volume
+
+
+def find_filter_device(G: nx.DiGraph) -> str:
+    """查找过滤器设备"""
+    filter_nodes = [node for node in G.nodes() 
+                   if (G.nodes[node].get('class') or '') == 'virtual_filter']
+    
+    if filter_nodes:
+        return filter_nodes[0]
+    
+    raise ValueError("系统中未找到过滤器设备")
+
+
+def find_filter_vessel(G: nx.DiGraph) -> str:
+    """查找过滤器专用容器"""
+    possible_names = [
+        "filter_vessel",        # 标准过滤器容器
+        "filtration_vessel",    # 备选名称
+        "vessel_filter",        # 备选名称
+        "filter_unit",          # 备选名称
+        "filter"               # 简单名称
+    ]
+    
+    for vessel_name in possible_names:
+        if vessel_name in G.nodes():
+            return vessel_name
+    
+    raise ValueError(f"未找到过滤器容器。尝试了以下名称: {possible_names}")
+
+
+def find_filtrate_vessel(G: nx.DiGraph, filtrate_vessel: str = "") -> str:
+    """查找滤液收集容器"""
+    if filtrate_vessel and filtrate_vessel in G.nodes():
+        return filtrate_vessel
+    
+    # 自动查找滤液容器
+    possible_names = [
+        "filtrate_vessel",
+        "collection_bottle_1",
+        "collection_bottle_2",
+        "waste_workup"
+    ]
+    
+    for vessel_name in possible_names:
+        if vessel_name in G.nodes():
+            return vessel_name
+    
+    raise ValueError(f"未找到滤液收集容器。尝试了以下名称: {possible_names}")
+
+
+def find_connected_heatchill(G: nx.DiGraph, vessel: str) -> str:
+    """查找与指定容器相连的加热搅拌器"""
+    # 查找所有加热搅拌器节点
+    heatchill_nodes = [node for node in G.nodes() 
+                      if G.nodes[node].get('class') == 'virtual_heatchill']
+    
+    # 检查哪个加热器与目标容器相连
+    for heatchill in heatchill_nodes:
+        if G.has_edge(heatchill, vessel) or G.has_edge(vessel, heatchill):
+            return heatchill
+    
+    # 如果没有直接连接，返回第一个可用的加热器
+    if heatchill_nodes:
+        return heatchill_nodes[0]
+    
+    raise ValueError(f"未找到与容器 {vessel} 相连的加热搅拌器")
+
+
+def generate_filter_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    filtrate_vessel: str = "",
+    stir: bool = False,
+    stir_speed: float = 300.0,
+    temp: float = 25.0,
+    continue_heatchill: bool = False,
+    volume: float = 0.0
+) -> List[Dict[str, Any]]:
+    """
+    生成过滤操作的协议序列，复用 pump_protocol 的成熟算法
+    
+    过滤流程：
+    1. 液体转移：将待过滤溶液从源容器转移到过滤器
+    2. 启动加热搅拌：设置温度和搅拌
+    3. 执行过滤：通过过滤器分离固液
+    4. (可选) 继续或停止加热搅拌
+    
+    Args:
+        G: 有向图，节点为设备和容器，边为流体管道
+        vessel: 包含待过滤溶液的容器名称
+        filtrate_vessel: 滤液收集容器（可选，自动查找）
+        stir: 是否在过滤过程中搅拌
+        stir_speed: 搅拌速度 (RPM)
+        temp: 过滤温度 (°C)
+        continue_heatchill: 过滤后是否继续加热搅拌
+        volume: 预期过滤体积 (mL)，0表示全部过滤
+    
+    Returns:
+        List[Dict[str, Any]]: 过滤操作的动作序列
+    """
+    action_sequence = []
+    
+    print(f"FILTER: 开始生成过滤协议")
+    print(f"  - 源容器: {vessel}")
+    print(f"  - 滤液容器: {filtrate_vessel}")
+    print(f"  - 搅拌: {stir} ({stir_speed} RPM)" if stir else "  - 搅拌: 否")
+    print(f"  - 过滤温度: {temp}°C")
+    print(f"  - 预期过滤体积: {volume} mL" if volume > 0 else "  - 预期过滤体积: 全部")
+    print(f"  - 继续加热搅拌: {continue_heatchill}")
+    
+    # 验证源容器存在
+    if vessel not in G.nodes():
+        raise ValueError(f"源容器 '{vessel}' 不存在于系统中")
+    
+    # 获取源容器中的液体体积
+    source_volume = get_vessel_liquid_volume(G, vessel)
+    print(f"FILTER: 源容器 {vessel} 中有 {source_volume} mL 液体")
+    
+    # 查找过滤器设备
+    try:
+        filter_id = find_filter_device(G)
+        print(f"FILTER: 找到过滤器: {filter_id}")
+    except ValueError as e:
+        raise ValueError(f"无法找到过滤器: {str(e)}")
+    
+    # 查找过滤器容器
+    try:
+        filter_vessel_id = find_filter_vessel(G)
+        print(f"FILTER: 找到过滤器容器: {filter_vessel_id}")
+    except ValueError as e:
+        raise ValueError(f"无法找到过滤器容器: {str(e)}")
+    
+    # 查找滤液收集容器
+    try:
+        actual_filtrate_vessel = find_filtrate_vessel(G, filtrate_vessel)
+        print(f"FILTER: 找到滤液收集容器: {actual_filtrate_vessel}")
+    except ValueError as e:
+        raise ValueError(f"无法找到滤液收集容器: {str(e)}")
+    
+    # 查找加热搅拌器（如果需要温度控制或搅拌）
+    heatchill_id = None
+    if temp != 25.0 or stir or continue_heatchill:
+        try:
+            heatchill_id = find_connected_heatchill(G, filter_vessel_id)
+            print(f"FILTER: 找到加热搅拌器: {heatchill_id}")
+        except ValueError as e:
+            print(f"FILTER: 警告 - {str(e)}")
+    
+    # === 简化的体积计算策略 ===
+    if volume > 0:
+        transfer_volume = min(volume, source_volume if source_volume > 0 else volume)
+        print(f"FILTER: 指定过滤体积 {transfer_volume} mL")
+    elif source_volume > 0:
+        transfer_volume = source_volume * 0.9  # 90%
+        print(f"FILTER: 检测到液体体积，将过滤 {transfer_volume} mL")
+    else:
+        transfer_volume = 50.0  # 默认过滤量
+        print(f"FILTER: 未检测到液体体积，默认过滤 {transfer_volume} mL")
+    
+    # === 第一步：启动加热搅拌器（在转移前预热） ===
+    if heatchill_id and (temp != 25.0 or stir):
+        print(f"FILTER: 启动加热搅拌器，温度: {temp}°C，搅拌: {stir}")
+        
+        heatchill_action = {
+            "device_id": heatchill_id,
+            "action_name": "heat_chill_start",
+            "action_kwargs": {
+                "vessel": filter_vessel_id,
+                "temp": temp,
+                "purpose": f"过滤过程温度控制和搅拌"
+            }
+        }
+        action_sequence.append(heatchill_action)
+        
+        # 等待温度稳定
+        if temp != 25.0:
+            wait_time = min(30, abs(temp - 25.0) * 1.0)  # 根据温差估算预热时间
+            action_sequence.append({
+                "action_name": "wait",
+                "action_kwargs": {"time": wait_time}
+            })
+    
+    # === 第二步：将待过滤溶液转移到过滤器 ===
+    print(f"FILTER: 将 {transfer_volume} mL 溶液从 {vessel} 转移到 {filter_vessel_id}")
+    try:
+        # 使用成熟的 pump_protocol 算法进行液体转移
+        transfer_to_filter_actions = generate_pump_protocol(
+            G=G,
+            from_vessel=vessel,
+            to_vessel=filter_vessel_id,
+            volume=transfer_volume,
+            flowrate=1.0,  # 过滤转移用较慢速度，避免扰动
+            transfer_flowrate=1.5
+        )
+        action_sequence.extend(transfer_to_filter_actions)
+    except Exception as e:
+        raise ValueError(f"无法将溶液转移到过滤器: {str(e)}")
+    
+    # 转移后等待
+    action_sequence.append({
+        "action_name": "wait",
+        "action_kwargs": {"time": 5}
+    })
+    
+    # === 第三步：执行过滤操作（完全按照 Filter.action 参数） ===
+    print(f"FILTER: 执行过滤操作")
+    filter_action = {
+        "device_id": filter_id,
+        "action_name": "filter",
+        "action_kwargs": {
+            "vessel": filter_vessel_id,
+            "filtrate_vessel": actual_filtrate_vessel,
+            "stir": stir,
+            "stir_speed": stir_speed,
+            "temp": temp,
+            "continue_heatchill": continue_heatchill,
+            "volume": transfer_volume
+        }
+    }
+    action_sequence.append(filter_action)
+    
+    # 过滤后等待
+    action_sequence.append({
+        "action_name": "wait",
+        "action_kwargs": {"time": 10}
+    })
+    
+    # === 第四步：如果不继续加热搅拌，停止加热器 ===
+    if heatchill_id and not continue_heatchill and (temp != 25.0 or stir):
+        print(f"FILTER: 停止加热搅拌器")
+        
+        stop_action = {
+            "device_id": heatchill_id,
+            "action_name": "heat_chill_stop",
+            "action_kwargs": {
+                "vessel": filter_vessel_id
+            }
+        }
+        action_sequence.append(stop_action)
+    
+    print(f"FILTER: 生成了 {len(action_sequence)} 个动作")
+    print(f"FILTER: 过滤协议生成完成")
+    
+    return action_sequence
+
+
+# 便捷函数：常用过滤方案
+def generate_gravity_filter_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    filtrate_vessel: str = ""
+) -> List[Dict[str, Any]]:
+    """重力过滤：室温，无搅拌"""
+    return generate_filter_protocol(G, vessel, filtrate_vessel, False, 0.0, 25.0, False, 0.0)
+
+
+def generate_hot_filter_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    filtrate_vessel: str = "",
+    temp: float = 60.0
+) -> List[Dict[str, Any]]:
+    """热过滤：高温过滤，防止结晶析出"""
+    return generate_filter_protocol(G, vessel, filtrate_vessel, False, 0.0, temp, False, 0.0)
+
+
+def generate_stirred_filter_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    filtrate_vessel: str = "",
+    stir_speed: float = 200.0
+) -> List[Dict[str, Any]]:
+    """搅拌过滤：低速搅拌，防止滤饼堵塞"""
+    return generate_filter_protocol(G, vessel, filtrate_vessel, True, stir_speed, 25.0, False, 0.0)
+
+
+def generate_hot_stirred_filter_protocol(
+    G: nx.DiGraph,
+    vessel: str,
+    filtrate_vessel: str = "",
+    temp: float = 60.0,
+    stir_speed: float = 300.0
+) -> List[Dict[str, Any]]:
+    """热搅拌过滤：高温搅拌过滤"""
+    return generate_filter_protocol(G, vessel, filtrate_vessel, True, stir_speed, temp, False, 0.0)

unilabos/compile/filter_through_protocol.py

@@ -0,0 +1,387 @@
+from typing import List, Dict, Any
+import networkx as nx
+from .pump_protocol import generate_pump_protocol
+
+
+def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
+    """获取容器中的液体体积"""
+    if vessel not in G.nodes():
+        return 0.0
+    
+    vessel_data = G.nodes[vessel].get('data', {})
+    liquids = vessel_data.get('liquid', [])
+    
+    total_volume = 0.0
+    for liquid in liquids:
+        if isinstance(liquid, dict) and 'liquid_volume' in liquid:
+            total_volume += liquid['liquid_volume']
+    
+    return total_volume
+
+
+def find_filter_through_vessel(G: nx.DiGraph, filter_through: str) -> str:
+    """查找过滤介质容器"""
+    # 直接使用 filter_through 参数作为容器名称
+    if filter_through in G.nodes():
+        return filter_through
+    
+    # 尝试常见的过滤介质容器命名
+    possible_names = [
+        f"filter_{filter_through}",
+        f"{filter_through}_filter",
+        f"column_{filter_through}",
+        f"{filter_through}_column",
+        "filter_through_vessel",
+        "column_vessel",
+        "chromatography_column",
+        "filter_column"
+    ]
+    
+    for vessel_name in possible_names:
+        if vessel_name in G.nodes():
+            return vessel_name
+    
+    raise ValueError(f"未找到过滤介质容器 '{filter_through}'。尝试了以下名称: {[filter_through] + possible_names}")
+
+
+def find_eluting_solvent_vessel(G: nx.DiGraph, eluting_solvent: str) -> str:
+    """查找洗脱溶剂容器"""
+    if not eluting_solvent:
+        return ""
+    
+    # 按照命名规则查找溶剂瓶
+    solvent_vessel_id = f"flask_{eluting_solvent}"
+    
+    if solvent_vessel_id in G.nodes():
+        return solvent_vessel_id
+    
+    # 如果直接匹配失败，尝试模糊匹配
+    for node in G.nodes():
+        if node.startswith('flask_') and eluting_solvent.lower() in node.lower():
+            return node
+    
+    # 如果还是找不到，列出所有可用的溶剂瓶
+    available_flasks = [node for node in G.nodes() 
+                       if node.startswith('flask_') 
+                       and G.nodes[node].get('type') == 'container']
+    
+    raise ValueError(f"找不到洗脱溶剂 '{eluting_solvent}' 对应的溶剂瓶。可用溶剂瓶: {available_flasks}")
+
+
+def generate_filter_through_protocol(
+    G: nx.DiGraph,
+    from_vessel: str,
+    to_vessel: str,
+    filter_through: str,
+    eluting_solvent: str = "",
+    eluting_volume: float = 0.0,
+    eluting_repeats: int = 0,
+    residence_time: float = 0.0
+) -> List[Dict[str, Any]]:
+    """
+    生成通过过滤介质过滤的协议序列，复用 pump_protocol 的成熟算法
+    
+    过滤流程：
+    1. 液体转移：将样品从源容器转移到过滤介质
+    2. 重力过滤：液体通过过滤介质自动流到目标容器
+    3. 洗脱操作：将洗脱溶剂通过过滤介质洗脱目标物质
+    
+    Args:
+        G: 有向图，节点为设备和容器，边为流体管道
+        from_vessel: 源容器的名称，即物质起始所在的容器
+        to_vessel: 目标容器的名称，物质过滤后要到达的容器
+        filter_through: 过滤时所通过的介质，如滤纸、柱子等
+        eluting_solvent: 洗脱溶剂的名称，可选参数
+        eluting_volume: 洗脱溶剂的体积，可选参数
+        eluting_repeats: 洗脱操作的重复次数，默认为 0
+        residence_time: 物质在过滤介质中的停留时间，可选参数
+    
+    Returns:
+        List[Dict[str, Any]]: 过滤操作的动作序列
+    
+    Raises:
+        ValueError: 当找不到必要的设备或容器时
+    
+    Examples:
+        filter_through_actions = generate_filter_through_protocol(
+            G, "reaction_mixture", "collection_bottle_1", "celite", "ethanol", 20.0, 2, 30.0
+        )
+    """
+    action_sequence = []
+    
+    print(f"FILTER_THROUGH: 开始生成通过过滤协议")
+    print(f"  - 源容器: {from_vessel}")
+    print(f"  - 目标容器: {to_vessel}")
+    print(f"  - 过滤介质: {filter_through}")
+    print(f"  - 洗脱溶剂: {eluting_solvent}")
+    print(f"  - 洗脱体积: {eluting_volume} mL" if eluting_volume > 0 else "  - 洗脱体积: 无")
+    print(f"  - 洗脱重复次数: {eluting_repeats}")
+    print(f"  - 停留时间: {residence_time}s" if residence_time > 0 else "  - 停留时间: 无")
+    
+    # 验证源容器和目标容器存在
+    if from_vessel not in G.nodes():
+        raise ValueError(f"源容器 '{from_vessel}' 不存在于系统中")
+    
+    if to_vessel not in G.nodes():
+        raise ValueError(f"目标容器 '{to_vessel}' 不存在于系统中")
+    
+    # 获取源容器中的液体体积
+    source_volume = get_vessel_liquid_volume(G, from_vessel)
+    print(f"FILTER_THROUGH: 源容器 {from_vessel} 中有 {source_volume} mL 液体")
+    
+    # 查找过滤介质容器
+    try:
+        filter_through_vessel = find_filter_through_vessel(G, filter_through)
+        print(f"FILTER_THROUGH: 找到过滤介质容器: {filter_through_vessel}")
+    except ValueError as e:
+        raise ValueError(f"无法找到过滤介质容器: {str(e)}")
+    
+    # 查找洗脱溶剂容器（如果需要）
+    eluting_vessel = ""
+    if eluting_solvent and eluting_volume > 0 and eluting_repeats > 0:
+        try:
+            eluting_vessel = find_eluting_solvent_vessel(G, eluting_solvent)
+            print(f"FILTER_THROUGH: 找到洗脱溶剂容器: {eluting_vessel}")
+        except ValueError as e:
+            raise ValueError(f"无法找到洗脱溶剂容器: {str(e)}")
+    
+    # === 第一步：将样品从源容器转移到过滤介质 ===
+    transfer_volume = source_volume if source_volume > 0 else 100.0  # 默认100mL
+    print(f"FILTER_THROUGH: 将 {transfer_volume} mL 样品从 {from_vessel} 转移到 {filter_through_vessel}")
+    
+    try:
+        # 使用成熟的 pump_protocol 算法进行液体转移
+        sample_transfer_actions = generate_pump_protocol(
+            G=G,
+            from_vessel=from_vessel,
+            to_vessel=filter_through_vessel,
+            volume=transfer_volume,
+            flowrate=0.8,  # 较慢的流速，避免冲击过滤介质
+            transfer_flowrate=1.2
+        )
+        action_sequence.extend(sample_transfer_actions)
+    except Exception as e:
+        raise ValueError(f"无法将样品转移到过滤介质: {str(e)}")
+    
+    # === 第二步：等待样品通过过滤介质（停留时间） ===
+    if residence_time > 0:
+        print(f"FILTER_THROUGH: 等待样品在过滤介质中停留 {residence_time}s")
+        action_sequence.append({
+            "action_name": "wait",
+            "action_kwargs": {"time": residence_time}
+        })
+    else:
+        # 即使没有指定停留时间，也等待一段时间让液体通过
+        default_wait_time = max(10, transfer_volume / 10)  # 根据体积估算等待时间
+        print(f"FILTER_THROUGH: 等待样品通过过滤介质 {default_wait_time}s")
+        action_sequence.append({
+            "action_name": "wait",
+            "action_kwargs": {"time": default_wait_time}
+        })
+    
+    # === 第三步：洗脱操作（如果指定了洗脱参数） ===
+    if eluting_solvent and eluting_volume > 0 and eluting_repeats > 0 and eluting_vessel:
+        print(f"FILTER_THROUGH: 开始洗脱操作 - {eluting_repeats} 次，每次 {eluting_volume} mL {eluting_solvent}")
+        
+        for repeat_idx in range(eluting_repeats):
+            print(f"FILTER_THROUGH: 第 {repeat_idx + 1}/{eluting_repeats} 次洗脱")
+            
+            try:
+                # 将洗脱溶剂转移到过滤介质
+                eluting_transfer_actions = generate_pump_protocol(
+                    G=G,
+                    from_vessel=eluting_vessel,
+                    to_vessel=filter_through_vessel,
+                    volume=eluting_volume,
+                    flowrate=0.6,  # 洗脱用更慢的流速
+                    transfer_flowrate=1.0
+                )
+                action_sequence.extend(eluting_transfer_actions)
+            except Exception as e:
+                raise ValueError(f"第 {repeat_idx + 1} 次洗脱转移失败: {str(e)}")
+            
+            # 等待洗脱溶剂通过过滤介质
+            eluting_wait_time = max(30, eluting_volume / 5)  # 根据洗脱体积估算等待时间
+            print(f"FILTER_THROUGH: 等待第 {repeat_idx + 1} 次洗脱液通过 {eluting_wait_time}s")
+            action_sequence.append({
+                "action_name": "wait",
+                "action_kwargs": {"time": eluting_wait_time}
+            })
+            
+            # 洗脱间隔等待
+            if repeat_idx < eluting_repeats - 1:  # 不是最后一次洗脱
+                action_sequence.append({
+                    "action_name": "wait",
+                    "action_kwargs": {"time": 10}
+                })
+    
+    # === 第四步：最终等待，确保所有液体完全通过 ===
+    print(f"FILTER_THROUGH: 最终等待，确保所有液体完全通过过滤介质")
+    action_sequence.append({
+        "action_name": "wait",
+        "action_kwargs": {"time": 20}
+    })
+    
+    print(f"FILTER_THROUGH: 生成了 {len(action_sequence)} 个动作")
+    print(f"FILTER_THROUGH: 通过过滤协议生成完成")
+    print(f"FILTER_THROUGH: 样品从 {from_vessel} 通过 {filter_through} 到达 {to_vessel}")
+    if eluting_repeats > 0:
+        total_eluting_volume = eluting_volume * eluting_repeats
+        print(f"FILTER_THROUGH: 总洗脱体积: {total_eluting_volume} mL {eluting_solvent}")
+    
+    return action_sequence
+
+
+# 便捷函数：常用过滤方案
+def generate_gravity_column_protocol(
+    G: nx.DiGraph,
+    from_vessel: str,
+    to_vessel: str,
+    column_material: str = "silica_gel"
+) -> List[Dict[str, Any]]:
+    """重力柱层析：简单重力过滤，无洗脱"""
+    return generate_filter_through_protocol(G, from_vessel, to_vessel, column_material, "", 0.0, 0, 0.0)
+
+
+def generate_celite_filter_protocol(
+    G: nx.DiGraph,
+    from_vessel: str,
+    to_vessel: str,
+    wash_solvent: str = "ethanol",
+    wash_volume: float = 20.0
+) -> List[Dict[str, Any]]:
+    """硅藻土过滤：用于去除固体杂质"""
+    return generate_filter_through_protocol(G, from_vessel, to_vessel, "celite", wash_solvent, wash_volume, 1, 30.0)
+
+
+def generate_column_chromatography_protocol(
+    G: nx.DiGraph,
+    from_vessel: str,
+    to_vessel: str,
+    column_material: str = "silica_gel",
+    eluting_solvent: str = "ethyl_acetate",
+    eluting_volume: float = 30.0,
+    eluting_repeats: int = 3
+) -> List[Dict[str, Any]]:
+    """柱层析：多次洗脱分离"""
+    return generate_filter_through_protocol(
+        G, from_vessel, to_vessel, column_material, eluting_solvent, eluting_volume, eluting_repeats, 60.0
+    )
+
+
+def generate_solid_phase_extraction_protocol(
+    G: nx.DiGraph,
+    from_vessel: str,
+    to_vessel: str,
+    spe_cartridge: str = "C18",
+    eluting_solvent: str = "methanol",
+    eluting_volume: float = 15.0,
+    eluting_repeats: int = 2
+) -> List[Dict[str, Any]]:
+    """固相萃取：C18柱或其他SPE柱"""
+    return generate_filter_through_protocol(
+        G, from_vessel, to_vessel, spe_cartridge, eluting_solvent, eluting_volume, eluting_repeats, 120.0
+    )
+
+
+def generate_resin_filter_protocol(
+    G: nx.DiGraph,
+    from_vessel: str,
+    to_vessel: str,
+    resin_type: str = "ion_exchange",
+    regeneration_solvent: str = "NaCl_solution",
+    regeneration_volume: float = 25.0
+) -> List[Dict[str, Any]]:
+    """树脂过滤：离子交换树脂或其他功能树脂"""
+    return generate_filter_through_protocol(
+        G, from_vessel, to_vessel, resin_type, regeneration_solvent, regeneration_volume, 1, 180.0
+    )
+
+
+def generate_multi_step_purification_protocol(
+    G: nx.DiGraph,
+    from_vessel: str,
+    to_vessel: str,
+    filter_steps: List[Dict[str, Any]]
+) -> List[Dict[str, Any]]:
+    """
+    多步骤纯化：连续多个过滤介质
+    
+    Args:
+        G: 网络图
+        from_vessel: 源容器
+        to_vessel: 最终目标容器
+        filter_steps: 过滤步骤列表，每个元素包含过滤参数
+    
+    Returns:
+        List[Dict[str, Any]]: 完整的动作序列
+    
+    Example:
+        filter_steps = [
+            {
+                "to_vessel": "intermediate_vessel_1",
+                "filter_through": "celite",
+                "eluting_solvent": "",
+                "eluting_volume": 0.0,
+                "eluting_repeats": 0,
+                "residence_time": 30.0
+            },
+            {
+                "from_vessel": "intermediate_vessel_1",
+                "to_vessel": "final_vessel",
+                "filter_through": "silica_gel",
+                "eluting_solvent": "ethyl_acetate",
+                "eluting_volume": 20.0,
+                "eluting_repeats": 2,
+                "residence_time": 60.0
+            }
+        ]
+    """
+    action_sequence = []
+    
+    current_from_vessel = from_vessel
+    
+    for i, step in enumerate(filter_steps):
+        print(f"FILTER_THROUGH: 处理第 {i+1}/{len(filter_steps)} 个过滤步骤")
+        
+        # 使用步骤中指定的参数，或使用默认值
+        step_from_vessel = step.get('from_vessel', current_from_vessel)
+        step_to_vessel = step.get('to_vessel', to_vessel if i == len(filter_steps) - 1 else f"intermediate_vessel_{i+1}")
+        
+        # 生成单个过滤步骤的协议
+        step_actions = generate_filter_through_protocol(
+            G=G,
+            from_vessel=step_from_vessel,
+            to_vessel=step_to_vessel,
+            filter_through=step.get('filter_through', 'silica_gel'),
+            eluting_solvent=step.get('eluting_solvent', ''),
+            eluting_volume=step.get('eluting_volume', 0.0),
+            eluting_repeats=step.get('eluting_repeats', 0),
+            residence_time=step.get('residence_time', 0.0)
+        )
+        
+        action_sequence.extend(step_actions)
+        
+        # 更新下一步的源容器
+        current_from_vessel = step_to_vessel
+        
+        # 在步骤之间加入等待时间
+        if i < len(filter_steps) - 1:  # 不是最后一个步骤
+            action_sequence.append({
+                "action_name": "wait",
+                "action_kwargs": {"time": 15}
+            })
+    
+    print(f"FILTER_THROUGH: 多步骤纯化协议生成完成，共 {len(action_sequence)} 个动作")
+    return action_sequence
+
+
+# 测试函数
+def test_filter_through_protocol():
+    """测试通过过滤协议的示例"""
+    print("=== FILTER THROUGH PROTOCOL 测试 ===")
+    print("测试完成")
+
+
+if __name__ == "__main__":
+    test_filter_through_protocol()