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139 Commits

Author SHA1 Message Date
Xuwznln
22ed7efa64 Merge branch 'dev' into fork/KCFeng425/fix-protocol-parameter
# Conflicts:
#	unilabos/app/mq.py
#	unilabos/registry/devices/virtual_device.yaml
#	unilabos/registry/devices/work_station.yaml
2025-07-16 11:10:05 +08:00
KCFeng425
ed3b22a738 补充了剩下的几个protocol 2025-07-16 10:38:12 +08:00
Xuwznln
540c5e94b7 增加注册表版本参数,支持将auto-指令人工检查后非auto,不生成人工已检查的指令,取消不必要的description生成 2025-07-16 09:46:32 +08:00
Xuwznln
f9aae44174 增加注册表版本参数,支持将auto-指令人工检查后非auto,不生成人工已检查的指令,取消不必要的description生成 2025-07-16 01:05:16 +08:00
Xuwznln
10cb645191 不生成已配置action的动作,增加prcxi的debug模式 2025-07-15 13:56:34 +08:00
KCFeng425
ac294194e6 优化了全protocol的运行时间,除了pumptransfer相关的还没 2025-07-15 10:31:19 +08:00
Guangxin Zhang
4456529cfb Update prcxi.py to fit the function in unilabos. 2025-07-14 15:23:31 +08:00
Xuwznln
694a779c66 update prcxi registry 2025-07-11 18:43:11 +08:00
Xuwznln
5d214ebcd8 update prcxi 2025-07-11 18:20:50 +08:00
Xuwznln
0e11dacead assert blending_times > 0 2025-07-11 18:15:41 +08:00
Xuwznln
7b68545db3 prcxi blending 2025-07-11 18:11:44 +08:00
Guangxin Zhang
25960c2ed5 Add plateT6 to PRCXI configuration and enhance error handling in liquid handling 2025-07-11 18:10:21 +08:00
Xuwznln
72c67ba25c 任意执行错误都应该返回failed 2025-07-11 16:33:55 +08:00
Xuwznln
cd9e7ef12c 任意执行错误都应该返回failed 2025-07-11 16:30:56 +08:00
Xuwznln
b85722f44d add pickup tips for prcxi 2025-07-11 16:09:53 +08:00
Guangxin Zhang
5a2cc2d709 更新PRCXI配置,修改主机地址和设置状态,并添加示例用法 2025-07-11 16:00:45 +08:00
Xuwznln
644feced55 修正prcxi启动 2025-07-11 15:50:30 +08:00
Xuwznln
61ee446542 更新实例 2025-07-11 15:42:01 +08:00
Xuwznln
18f6685e18 更新实例 2025-07-11 15:36:46 +08:00
Xuwznln
e2052d4a2c 更新实例 2025-07-11 15:11:44 +08:00
KCFeng425
23eb1139a9 修补了一些单位处理,bump version to 0.9.11 2025-07-10 18:25:13 +08:00
KCFeng425
7b93332bf5 protocol完整修复版本& bump version to 0.9.10 2025-07-10 16:48:09 +08:00
Junhan Chang
d82ccd5cf1 fix bugs from new actions 2025-07-08 17:25:42 +08:00
q434343
50282664e0 修改moveit_interface,并在mqtt上报时发送一个时间戳,方便网页端对数据的筛选 (#62)
* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

* change arm's name

* change name

* fix ik error

* 修改moveit_interface,并在mqtt上报时发送一个时间戳

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
2025-07-08 15:49:35 +08:00
KCFeng425
acc9e5ce0d bump version to 0.9.9 2025-07-07 18:44:01 +08:00
KCFeng425
ab2ab7fcc7 添加了固体加样器,丰富了json,修改了add protocol 2025-07-07 18:35:35 +08:00
KCFeng425
5767266563 补充了四个action 2025-07-07 12:33:10 +08:00
KCFeng425
4c6e437eb1 修复了部分的protocol因为XDL更新导致的问题
但是pumptransfer,add,dissolve,separate还没修,后续还需要写virtual固体加料器
2025-07-06 19:21:53 +08:00
Xuwznln
ce8667f937 更新中析仪器,以及启动示例 2025-07-06 18:39:40 +08:00
Guangxin Zhang
bef44b2293 Update Prcxi 2025-07-05 22:03:49 +08:00
Guangxin Zhang
b78c6c6ba9 Update prcxi.py 2025-07-05 18:02:58 +08:00
Guangxin Zhang
0d512c9e38 Create prcxi.py 2025-07-05 17:16:59 +08:00
Kongchang Feng
c8c755057c Update work_station.yaml (#60)
* Update work_station.yaml

* Checklist里面有XDL跟protocol之间没对齐的问题,工作量有点大找时间写完
2025-07-05 15:13:14 +08:00
Xuwznln
a6ec20e279 转换到ros消息时,要进行基础类型转换 2025-07-05 12:43:27 +08:00
Xuwznln
b69aceaff3 Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-07-04 21:23:38 +08:00
Kongchang Feng
21afdb62bc Create 5 new protocols & bump version 0.9.8 (#59)
* 添加了5个缺失的protocol,验证了可以运行

* bump version to 0.9.8

* 修复新增的Action的字段缺失

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
2025-07-04 13:58:27 +08:00
Xuwznln
d7d43af40a 修复任务执行传参 2025-07-04 13:52:23 +08:00
ZiWei
132955617d Add channel_sources config in conda_build_config.yaml (#58) 2025-07-03 23:59:08 +08:00
Xuwznln
e7521972e4 匹配init param schema格式 2025-06-30 12:29:30 +08:00
Xuwznln
f2753fc69a Merge branch 'main' into dev 2025-06-29 19:18:17 +08:00
Xuwznln
09ad905280 修复auto-的Action在protocol node下错误注册 2025-06-29 19:12:32 +08:00
Junhan Chang
7714c71cd2 add camera and dependency (#56) 2025-06-29 17:35:32 +08:00
Junhan Chang
64832718be Fix handle names (#55)
* fix handle names

* improve evacuateAndRefill gas source finding
2025-06-29 17:31:44 +08:00
Xuwznln
68871358c2 成功动态导入的不再需要使用静态导入 2025-06-29 11:52:59 +08:00
Xuwznln
498b3cad6a 支持通过list[int],list[float]进行Int64MultiArray,Float64MultiArray的替换 2025-06-29 11:52:24 +08:00
Xuwznln
157da1759d status types对于嵌套类型返回的对象,暂时处理成字符串,无法直接进行转换 2025-06-29 11:26:35 +08:00
Xuwznln
be0a73eb19 修复静态方法识别get status,注册表支持python类型 2025-06-28 12:18:30 +08:00
Xuwznln
9be6e1069a 修复部分识别error 2025-06-28 10:52:34 +08:00
Xuwznln
817e88cfc4 修复不启用注册表补充就无法启动的bug 2025-06-28 01:32:10 +08:00
Xuwznln
15f3f8518b 支持通过导入方式补全注册表,新增工作流unilabos_device_id字段 2025-06-28 01:19:54 +08:00
Xuwznln
bbc49e9aab 新增注册表补全功能,修复Protocol执行失败 2025-06-27 23:45:05 +08:00
Xuwznln
4139e079f4 Dev (#52)
* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* 37-biomek-i5i7 (#40)

* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* Refine biomek

* Refine copy issue

* Refine

---------

Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>

* Device visualization (#39)

* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>

* Device visualization (#41)

* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

* change arm's name

* change name

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>

* fix move it

* fix move it

* create_resource

* bump ver
modify slot type

* 增加modbus支持
调整protocol node以更好支持多种类型的read和write

* 调整protocol node以更好支持多种类型的read和write

* 补充日志

* Device visualization (#42)

* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

* change arm's name

* change name

* fix ik error

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>

* Add Mock Device for Organic Synthesis\添加有机合成的虚拟仪器和Protocol (#43)

* Add Device MockChiller

Add device MockChiller

* Add Device MockFilter

* Add Device MockPump

* Add Device MockRotavap

* Add Device MockSeparator

* Add Device MockStirrer

* Add Device MockHeater

* Add Device MockVacuum

* Add Device MockSolenoidValve

* Add Device Mock \_init_.py

* 规范模拟设备代码与注册表信息

* 更改Mock大写文件夹名

* 删除大写目录

* Edited Mock device json

* Match mock device with action

* Edit mock device yaml

* Add new action

* Add Virtual Device, Action, YAML, Protocol for Organic Syn

* 单独分类测试的protocol文件夹

* 更名Action

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>

* bump version & protocol fix

* hotfix: Add macos_sdk_config (#46)

Co-authored-by: quehh <scienceol@outlook.com>

* include device_mesh when pip install

* 测试自动构建

* try build fix

* try build

* test artifacts

* hotfix: Add .certs in .gitignore

* create container

* container 添加和更新完成

* Device registry port (#49)

* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* unify liquid_handler definition

* Update virtual_device.yaml

* 更正了stir和heater的连接方式

* 区分了虚拟仪器中的八通阀和电磁阀,添加了两个阀门的驱动

* 修改了add protocol

* 修复了阀门更新版的bug

* 修复了添加protocol前缀导致的不能启动的bug

* Fix handles

* bump version to 0.9.6

* add resource edge upload

* update container registry and handles

* add virtual_separator virtual_rotavap
fix transfer_pump

* fix container value
add parent_name to edge device id

* 大图的问题都修复好了,添加了gassource和vacuum pump的驱动以及注册表

* default resource upload mode is false

* 添加了icon的文件名在注册表里面

* 修改了json图中link的格式

* fix resource and edge upload

* fix device ports

* Fix edge id

* 移除device的父节点关联

* separate registry sync and resource_add

* 默认不进行注册表报送,通过命令unilabos-register或者增加启动参数

* 完善tip

* protocol node不再嵌套显示

* bump version to 0.9.7  新增一个测试PumpTransferProtocol的teststation,亲测可以运行,将八通阀们和转移泵与pump_protocol适配

* protocol node 执行action不应携带自身device id

* 添加了一套简易双八通阀工作站JSON,亲测能跑

* 修复了很多protocol,亲测能跑

* 添加了run column和filter through的protocol,亲测能跑

* fix mock_reactor

* 修改了大图和小图的json,但是在前端上没看到改变

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>

* 更新workstation注册表

* 添加了两个protocol的检索功能 (#51)

* 添加了两个protocol的检索liquid type功能

* fix workstation registry

* 修复了没连接的几个仪器的link,添加了container的icon

* 修改了json和注册表,现在大图全部的device都链接上了

* 修复了小图的json图,线全部连上了

* add work_station protocol handles (ports)

* fix workstation action handle

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@dp.tech>

---------

Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: Kongchang Feng <2100011801@stu.pku.edu.cn>
Co-authored-by: hh. <103566763+Mile-Away@users.noreply.github.com>
Co-authored-by: quehh <scienceol@outlook.com>
Co-authored-by: Harvey Que <quehaohui@dp.tech>
Co-authored-by: Junhan Chang <changjh@dp.tech>
2025-06-22 18:33:08 +08:00
Xuwznln
f9a9e91d56 Merge remote-tracking branch 'origin/main' into dev
# Conflicts:
#	test/experiments/Protocol_Test_Station/clean_vessel_protocol_test_station.json
#	test/experiments/comprehensive_protocol/comprehensive_station.json
#	unilabos/compile/__init__.py
#	unilabos/compile/add_protocol.py
#	unilabos/compile/clean_vessel_protocol.py
#	unilabos/registry/devices/virtual_device.yaml
#	unilabos/registry/resources/organic/container.yaml
2025-06-22 18:32:46 +08:00
Kongchang Feng
96e9c76709 添加了两个protocol的检索功能 (#51)
* 添加了两个protocol的检索liquid type功能

* fix workstation registry

* 修复了没连接的几个仪器的link,添加了container的icon

* 修改了json和注册表,现在大图全部的device都链接上了

* 修复了小图的json图,线全部连上了

* add work_station protocol handles (ports)

* fix workstation action handle

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@dp.tech>
2025-06-22 18:30:09 +08:00
Xuwznln
06b7962ef9 更新workstation注册表 2025-06-22 14:52:40 +08:00
Xuwznln
efc0a9fbbc v0.9.7 (#50)
注册表单独上传、新增大量模拟节点与Protocol、新增container管理、修复pip install出现的文件缺失问题


* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* 37-biomek-i5i7 (#40)

* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* Refine biomek

* Refine copy issue

* Refine

---------

Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>

* Device visualization (#39)

* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>

* Device visualization (#41)

* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

* change arm's name

* change name

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>

* fix move it

* fix move it

* create_resource

* bump ver
modify slot type

* 增加modbus支持
调整protocol node以更好支持多种类型的read和write

* 调整protocol node以更好支持多种类型的read和write

* 补充日志

* Device visualization (#42)

* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

* change arm's name

* change name

* fix ik error

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>

* Add Mock Device for Organic Synthesis\添加有机合成的虚拟仪器和Protocol (#43)

* Add Device MockChiller

Add device MockChiller

* Add Device MockFilter

* Add Device MockPump

* Add Device MockRotavap

* Add Device MockSeparator

* Add Device MockStirrer

* Add Device MockHeater

* Add Device MockVacuum

* Add Device MockSolenoidValve

* Add Device Mock \_init_.py

* 规范模拟设备代码与注册表信息

* 更改Mock大写文件夹名

* 删除大写目录

* Edited Mock device json

* Match mock device with action

* Edit mock device yaml

* Add new action

* Add Virtual Device, Action, YAML, Protocol for Organic Syn

* 单独分类测试的protocol文件夹

* 更名Action

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>

* bump version & protocol fix

* hotfix: Add macos_sdk_config (#46)

Co-authored-by: quehh <scienceol@outlook.com>

* include device_mesh when pip install

* 测试自动构建

* try build fix

* try build

* test artifacts

* hotfix: Add .certs in .gitignore

* create container

* container 添加和更新完成

* Device registry port (#49)

* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* unify liquid_handler definition

* Update virtual_device.yaml

* 更正了stir和heater的连接方式

* 区分了虚拟仪器中的八通阀和电磁阀,添加了两个阀门的驱动

* 修改了add protocol

* 修复了阀门更新版的bug

* 修复了添加protocol前缀导致的不能启动的bug

* Fix handles

* bump version to 0.9.6

* add resource edge upload

* update container registry and handles

* add virtual_separator virtual_rotavap
fix transfer_pump

* fix container value
add parent_name to edge device id

* 大图的问题都修复好了,添加了gassource和vacuum pump的驱动以及注册表

* default resource upload mode is false

* 添加了icon的文件名在注册表里面

* 修改了json图中link的格式

* fix resource and edge upload

* fix device ports

* Fix edge id

* 移除device的父节点关联

* separate registry sync and resource_add

* 默认不进行注册表报送,通过命令unilabos-register或者增加启动参数

* 完善tip

* protocol node不再嵌套显示

* bump version to 0.9.7  新增一个测试PumpTransferProtocol的teststation,亲测可以运行,将八通阀们和转移泵与pump_protocol适配

* protocol node 执行action不应携带自身device id

* 添加了一套简易双八通阀工作站JSON,亲测能跑

* 修复了很多protocol,亲测能跑

* 添加了run column和filter through的protocol,亲测能跑

* fix mock_reactor

* 修改了大图和小图的json,但是在前端上没看到改变

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>

---------

Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: Kongchang Feng <2100011801@stu.pku.edu.cn>
Co-authored-by: hh. <103566763+Mile-Away@users.noreply.github.com>
Co-authored-by: quehh <scienceol@outlook.com>
Co-authored-by: Harvey Que <quehaohui@dp.tech>
2025-06-22 13:02:51 +08:00
Xuwznln
6faa19a250 Merge branch 'main' into dev 2025-06-22 13:01:37 +08:00
Kongchang Feng
46cec82a51 Device registry port (#49)
* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* unify liquid_handler definition

* Update virtual_device.yaml

* 更正了stir和heater的连接方式

* 区分了虚拟仪器中的八通阀和电磁阀,添加了两个阀门的驱动

* 修改了add protocol

* 修复了阀门更新版的bug

* 修复了添加protocol前缀导致的不能启动的bug

* Fix handles

* bump version to 0.9.6

* add resource edge upload

* update container registry and handles

* add virtual_separator virtual_rotavap
fix transfer_pump

* fix container value
add parent_name to edge device id

* 大图的问题都修复好了,添加了gassource和vacuum pump的驱动以及注册表

* default resource upload mode is false

* 添加了icon的文件名在注册表里面

* 修改了json图中link的格式

* fix resource and edge upload

* fix device ports

* Fix edge id

* 移除device的父节点关联

* separate registry sync and resource_add

* 默认不进行注册表报送,通过命令unilabos-register或者增加启动参数

* 完善tip

* protocol node不再嵌套显示

* bump version to 0.9.7  新增一个测试PumpTransferProtocol的teststation,亲测可以运行,将八通阀们和转移泵与pump_protocol适配

* protocol node 执行action不应携带自身device id

* 添加了一套简易双八通阀工作站JSON,亲测能跑

* 修复了很多protocol,亲测能跑

* 添加了run column和filter through的protocol,亲测能跑

* fix mock_reactor

* 修改了大图和小图的json,但是在前端上没看到改变

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
2025-06-22 12:59:59 +08:00
Xuwznln
f7db8d17c5 container 添加和更新完成 2025-06-15 17:37:38 +08:00
Xuwznln
a354965f8e Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-06-15 12:51:48 +08:00
Xuwznln
934276d2f7 create container 2025-06-15 12:51:37 +08:00
Harvey Que
803809480b hotfix: Add .certs in .gitignore 2025-06-15 09:09:06 +08:00
Xuwznln
5478ba3237 test artifacts 2025-06-13 14:13:41 +08:00
Xuwznln
49f1aa9c28 try build 2025-06-13 14:05:58 +08:00
Xuwznln
d5d516f0ef try build fix 2025-06-13 13:52:45 +08:00
Xuwznln
4471fed4b8 测试自动构建 2025-06-13 13:47:08 +08:00
Xuwznln
30d143e1a5 Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-06-13 13:12:46 +08:00
Xuwznln
75ea45f21e include device_mesh when pip install 2025-06-13 00:32:15 +08:00
hh.
66af337d6c hotfix: Add macos_sdk_config (#46)
Co-authored-by: quehh <scienceol@outlook.com>
2025-06-12 22:46:44 +08:00
Xuwznln
ae3c65c1d3 Merge remote-tracking branch 'origin/main' into dev
# Conflicts:
#	README.md
#	README_zh.md
#	recipes/ros-humble-unilabos-msgs/recipe.yaml
#	recipes/unilabos/recipe.yaml
#	setup.py
#	unilabos/compile/pump_protocol.py
#	unilabos/registry/devices/pump_and_valve.yaml
#	unilabos/ros/nodes/presets/protocol_node.py
2025-06-12 21:27:07 +08:00
Xuwznln
11e4f053f1 bump version & protocol fix 2025-06-12 21:21:25 +08:00
Kongchang Feng
96f37b3b0d Add Mock Device for Organic Synthesis\添加有机合成的虚拟仪器和Protocol (#43)
* Add Device MockChiller

Add device MockChiller

* Add Device MockFilter

* Add Device MockPump

* Add Device MockRotavap

* Add Device MockSeparator

* Add Device MockStirrer

* Add Device MockHeater

* Add Device MockVacuum

* Add Device MockSolenoidValve

* Add Device Mock \_init_.py

* 规范模拟设备代码与注册表信息

* 更改Mock大写文件夹名

* 删除大写目录

* Edited Mock device json

* Match mock device with action

* Edit mock device yaml

* Add new action

* Add Virtual Device, Action, YAML, Protocol for Organic Syn

* 单独分类测试的protocol文件夹

* 更名Action

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
2025-06-12 20:58:39 +08:00
Xuwznln
d7d0a27976 Device visualization (#42)
* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

* change arm's name

* change name

* fix ik error

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
2025-06-12 20:58:18 +08:00
Xuwznln
34151f5cb2 补充日志 2025-06-10 22:13:35 +08:00
Xuwznln
369a21b904 调整protocol node以更好支持多种类型的read和write 2025-06-10 21:54:23 +08:00
Xuwznln
90169981c1 增加modbus支持
调整protocol node以更好支持多种类型的read和write
2025-06-10 21:46:49 +08:00
Xuwznln
d297abfd19 bump ver
modify slot type
2025-06-10 03:46:28 +08:00
Xuwznln
9c515a252a create_resource 2025-06-10 02:55:29 +08:00
Xuwznln
ea5e7a5ce2 Merge branch '37-biomek-i5i7' into dev
# Conflicts:
#	README.md
#	README_zh.md
#	recipes/ros-humble-unilabos-msgs/recipe.yaml
#	recipes/unilabos/recipe.yaml
#	setup.py
#	unilabos/devices/liquid_handling/biomek.py
#	unilabos/devices/liquid_handling/biomek_test.py
#	unilabos/registry/devices/liquid_handler.yaml
#	unilabos/registry/registry.py
#	unilabos/ros/msgs/message_converter.py
#	unilabos_msgs/action/LiquidHandlerMoveBiomek.action
#	unilabos_msgs/action/LiquidHandlerTransferBiomek.action
2025-06-10 02:00:43 +08:00
Xuwznln
2e9a0a4677 fix move it 2025-06-10 01:55:39 +08:00
Xuwznln
4c7aa8a89a fix move it 2025-06-10 01:53:58 +08:00
Xuwznln
d8a0c5e715 Device visualization (#41)
* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

* change arm's name

* change name

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>
2025-06-10 01:28:09 +08:00
q434343
133ffaac17 Device visualization (#39)
* Update README and MQTTClient for installation instructions and code improvements

* feat: 支持local_config启动
add: 增加对crt path的说明,为传入config.py的相对路径
move: web component

* add: registry description

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* feat: node_info_update srv
fix: OTDeck cant create

* close #12
feat: slave node registry

* feat: show machine name
fix: host node registry not uploaded

* feat: add hplc registry

* feat: add hplc registry

* fix: hplc status typo

* fix: devices/

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* fix: device.class possible null

* fix: HPLC additions with online service

* fix: slave mode spin not working

* fix: slave mode spin not working

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* feat: 多ProtocolNode 允许子设备ID相同
feat: 上报发现的ActionClient
feat: Host重启动,通过discover机制要求slaveNode重新注册,实现信息及时上报

* feat: 支持env设置config

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* Device visualization (#14)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: missing hostname in devices_names
fix: upload_file for model file

* fix: missing paho-mqtt package
bump version to 0.9.0

* fix startup
add ResourceCreateFromOuter.action

* fix type hint

* update actions

* update actions

* host node add_resource_from_outer
fix cmake list

* pass device config to device class

* add: bind_parent_ids to resource create action
fix: message convert string

* fix: host node should not be re_discovered

* feat: resource tracker support dict

* feat: add more necessary params

* feat: fix boolean null in registry action data

* feat: add outer resource

* 编写mesh添加action

* feat: append resource

* add action

* feat: vis 2d for plr

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

* Device visualization (#22)

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* add 3d visualization

* 完成在main中启动设备可视化

完成在main中启动设备可视化,并输出物料ID:mesh的对应关系resource_model

添加物料模型管理类,遍历物料与resource_model,完成TF数据收集

* 完成TF发布

* 修改模型方向,在yaml中添加变换属性

* 添加物料tf变化时,发送topic到前端

另外修改了物料初始化的方法,防止在tf还未发布时提前建立物料模型与发布话题

* 添加关节发布节点与物料可视化节点进入unilab

* 使用json启动plr与3D模型仿真

* 完成启动OT并联动rviz

* 修复rviz位置问题,

修复rviz位置问题,
在无tf变动时减缓发送频率
在backend中添加物料跟随方法

* fix: running logic

* fix: running logic

* fix: missing ot

* 在main中直接初始化republisher和物料的mesh节点

* 将joint_republisher和resource_mesh_manager添加进 main_slave_run.py中

* 编写mesh添加action

* add action

* fix

* fix: browser on rviz

* fix: cloud bridge error fallback to local

* fix: salve auto run rviz

* 初始化两个plate

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>

* fix: multi channel

* fix: aspirate

* fix: aspirate

* fix: aspirate

* fix: aspirate

* 提交

* fix: jobadd

* fix: jobadd

* fix: msg converter

* tijiao

* add resource creat easy action

* identify debug msg

* mq client id

* 提取lh的joint发布

* unify liquid_handler definition

* 修改物料跟随与物料添加逻辑

修改物料跟随与物料添加逻辑
将joint_publisher类移出lh的backends,但仍需要对lh的backends进行一些改写

* Revert "修改物料跟随与物料添加逻辑"

This reverts commit 498c997ad7.

* Reapply "修改物料跟随与物料添加逻辑"

This reverts commit 3a60d2ae81.

* Revert "Merge remote-tracking branch 'upstream/dev' into device_visualization"

This reverts commit fa727220af, reversing
changes made to 498c997ad7.

* 修改物料放下时的方法,如果选择

修改物料放下时的方法,
如果选择drop_trash,则删除物料显示
如果选择drop,则让其解除连接

* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* unilab添加moveit启动

1,整合所有moveit节点到一个move_group中,并整合所有的controller依次激活
2,添加pymoveit2的节点,使用json可直接启动
3,修改机械臂规划方式,添加约束,让冗余关节不会进行过多移动

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* 修改物体attach时,多次赋值当前时间导致卡顿问题,

* Revert "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 56d45b94f5.

* Reapply "修改物体attach时,多次赋值当前时间导致卡顿问题,"

This reverts commit 07d9db20c3.

* 添加缺少物料:"plate_well_G12",

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* add

* fix tip resource data

* liquid states

* change to debug level

* Revert "change to debug level"

This reverts commit 5d9953c3e5.

* Reapply "change to debug level"

This reverts commit 2487bb6ffc.

* fix tip resource data

* add full device

* add moveit yaml

* 修复moveit
增加post_init阶段,给予ros_node反向

* remove necessary node

* fix moveit action client

* remove necessary imports

* Update moveit_interface.py

* fix handler_key uppercase

* json add liquids

* fix setup

* add

* change to "sources" and "targets" for lh

* bump version

* remove parent's parent link

---------

Co-authored-by: Harvey Que <Q-Query@outlook.com>
Co-authored-by: wznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>
2025-06-09 17:06:04 +08:00
Xuwznln
729a0fcf0c 37-biomek-i5i7 (#40)
* add biomek.py demo implementation

* 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。

* Test

* fix biomek success type

* Convert LH action to biomek.

* Update biomek.py

* 注册表上报handle和schema (param input)

* 修复biomek缺少的字段

* delete 's'

* Remove warnings

* Update biomek.py

* Biomek test

* Update biomek.py

* 新增transfer_biomek的msg

* New transfer_biomek

* Updated transfer_biomek

* 更新transfer_biomek的msg

* 更新transfer_biomek的msg

* 支持Biomek创建

* new action

* fix key name typo

* New parameter for biomek to run.

* Refine

* Update

* new actions

* new actions

* 1

* registry

* fix biomek startup
add action handles

* fix handles not as default entry

* biomek_test.py

biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json

* Update biomek.py

* biomek_test.py

* fix liquid_handler.biomek handles

* host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2

* 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传

* 正确发送return_info结果

* 同步执行状态信息

* 取消raiseValueError提示

* Update biomek_test.py

* 0608 DONE

* 同步了Biomek.py 现在应可用

* biomek switch back to non-test

* temp disable initialize resource

* Refine biomek

* Refine copy issue

* Refine

---------

Co-authored-by: Junhan Chang <changjh@pku.edu.cn>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: qxw138 <qxw@stu.pku.edu.cn>
2025-06-09 16:57:42 +08:00
Xuwznln
6ae77e0408 temp disable initialize resource 2025-06-08 17:07:48 +08:00
Xuwznln
bab4b1d67a biomek switch back to non-test 2025-06-08 17:05:48 +08:00
Guangxin Zhang
12c17ec26e 同步了Biomek.py 现在应可用 2025-06-08 16:58:19 +08:00
Guangxin Zhang
6577fe12eb 0608 DONE 2025-06-08 16:49:11 +08:00
qxw138
f1fee5fad9 Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-06-08 15:52:31 +08:00
qxw138
9b3377aedb Update biomek_test.py 2025-06-08 15:52:20 +08:00
Xuwznln
526327727d 取消raiseValueError提示 2025-06-08 15:34:56 +08:00
Xuwznln
aaa86314e3 同步执行状态信息 2025-06-08 15:34:16 +08:00
Xuwznln
6a14104e6b 正确发送return_info结果 2025-06-08 15:06:38 +08:00
Xuwznln
ab0c4b708b 修正物料上传时间
改用biomek_test
增加ResultInfoEncoder
支持返回结果上传
2025-06-08 14:43:07 +08:00
Xuwznln
c0b7f2decd host node新增resource add时间统计
create_resource新增handle
bump version to 0.9.2
2025-06-08 13:23:55 +08:00
Junhan Chang
b6c9530c61 Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-06-07 18:52:23 +08:00
Junhan Chang
8698821c52 fix liquid_handler.biomek handles 2025-06-07 18:52:20 +08:00
qxw138
3f53f88390 biomek_test.py 2025-06-07 15:21:20 +08:00
qxw138
e840516ba4 Update biomek.py 2025-06-06 22:50:11 +08:00
qxw138
146d8c5296 Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-06-06 22:49:35 +08:00
qxw138
6573c9e02e biomek_test.py
biomek_test.py是最新的版本,运行它会生成complete_biomek_protocol.json
2025-06-06 22:42:06 +08:00
Xuwznln
c7b9c6a825 fix handles not as default entry 2025-06-06 18:13:53 +08:00
Xuwznln
48c43d3303 fix biomek startup
add action handles
2025-06-06 17:45:54 +08:00
Xuwznln
55be5e8188 registry 2025-06-06 17:21:19 +08:00
qxw138
1b9f3c666d 1 2025-06-06 14:44:17 +08:00
qxw138
097114d38c new actions 2025-06-06 14:31:10 +08:00
qxw138
5bec899479 new actions 2025-06-06 13:56:39 +08:00
Guangxin Zhang
5e86112ebf Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-06-06 13:25:34 +08:00
Guangxin Zhang
24ecb13b79 Update 2025-06-06 13:22:15 +08:00
qxw138
2573d34713 Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-06-06 13:18:42 +08:00
Guangxin Zhang
106d71e1db Refine 2025-06-06 11:11:17 +08:00
Guangxin Zhang
3c2a4a64ac Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-06-06 11:11:10 +08:00
Guangxin Zhang
1e00a66a65 New parameter for biomek to run. 2025-06-06 11:05:36 +08:00
qxw138
46da42deef Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-06-06 00:13:11 +08:00
Xuwznln
101c1bc3cc fix key name typo 2025-06-05 22:15:57 +08:00
qxw138
a62112ae26 new action 2025-06-05 17:26:36 +08:00
Xuwznln
dd5a7cab75 支持Biomek创建 2025-06-05 16:04:44 +08:00
Xuwznln
39de3ac58e 更新transfer_biomek的msg 2025-06-05 15:41:16 +08:00
Xuwznln
b99969278c 更新transfer_biomek的msg 2025-06-05 15:30:51 +08:00
Guangxin Zhang
b957ad2f71 Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-06-04 21:49:27 +08:00
Guangxin Zhang
e1a7c3a103 Updated transfer_biomek 2025-06-04 21:49:22 +08:00
Guangxin Zhang
e63c15997c New transfer_biomek 2025-06-04 21:29:54 +08:00
Xuwznln
c5a495f409 新增transfer_biomek的msg 2025-06-04 19:03:00 +08:00
Guangxin Zhang
5b240cb0ea Update biomek.py 2025-06-04 17:30:53 +08:00
Guangxin Zhang
147b8f47c0 Biomek test 2025-06-04 16:38:18 +08:00
Guangxin Zhang
6d2489af5f Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-06-04 13:27:11 +08:00
Guangxin Zhang
807dcdd226 Update biomek.py 2025-06-04 13:27:05 +08:00
Guangxin Zhang
8a29bc5597 Remove warnings 2025-06-04 13:20:12 +08:00
Guangxin Zhang
6f6c70ee57 delete 's' 2025-06-04 13:11:45 +08:00
Xuwznln
478a85951c 修复biomek缺少的字段 2025-05-31 00:00:55 +08:00
Xuwznln
0f2555c90c 注册表上报handle和schema (param input) 2025-05-31 00:00:39 +08:00
Guangxin Zhang
d2dda6ee03 Merge branch '37-biomek-i5i7' of https://github.com/dptech-corp/Uni-Lab-OS into 37-biomek-i5i7 2025-05-30 17:11:23 +08:00
Guangxin Zhang
208540b307 Update biomek.py 2025-05-30 17:08:19 +08:00
Guangxin Zhang
cb7c56a1d9 Convert LH action to biomek. 2025-05-30 17:00:06 +08:00
Xuwznln
ea2e9c3e3a fix biomek success type 2025-05-30 16:50:13 +08:00
Guangxin Zhang
0452a68180 Test 2025-05-30 16:03:49 +08:00
Xuwznln
90a0f3db9b merge 2025-05-30 15:40:14 +08:00
Junhan Chang
055d120ba8 更新LiquidHandlerBiomek类,添加资源创建功能,优化协议创建方法,修复部分代码格式问题,更新YAML配置以支持新功能。 2025-05-30 15:38:23 +08:00
Junhan Chang
a948f09f60 add biomek.py demo implementation 2025-05-30 13:33:10 +08:00
159 changed files with 46573 additions and 4759 deletions

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@@ -0,0 +1,132 @@
name: Multi-Platform Conda Build
on:
push:
branches: [ main, dev ]
tags: [ 'v*' ]
pull_request:
branches: [ main, dev ]
workflow_dispatch:
inputs:
platforms:
description: '选择构建平台 (逗号分隔): linux-64, osx-64, osx-arm64, win-64'
required: false
default: 'osx-arm64'
jobs:
build:
strategy:
fail-fast: false
matrix:
include:
- os: ubuntu-latest
platform: linux-64
env_file: unilabos-linux-64.yaml
- os: macos-13 # Intel
platform: osx-64
env_file: unilabos-osx-64.yaml
- os: macos-latest # ARM64
platform: osx-arm64
env_file: unilabos-osx-arm64.yaml
- os: windows-latest
platform: win-64
env_file: unilabos-win64.yaml
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Check if platform should be built
id: should_build
run: |
if [[ "${{ github.event_name }}" != "workflow_dispatch" ]]; then
echo "should_build=true" >> $GITHUB_OUTPUT
elif [[ -z "${{ github.event.inputs.platforms }}" ]]; then
echo "should_build=true" >> $GITHUB_OUTPUT
elif [[ "${{ github.event.inputs.platforms }}" == *"${{ matrix.platform }}"* ]]; then
echo "should_build=true" >> $GITHUB_OUTPUT
else
echo "should_build=false" >> $GITHUB_OUTPUT
fi
- name: Setup Miniconda
if: steps.should_build.outputs.should_build == 'true'
uses: conda-incubator/setup-miniconda@v3
with:
miniconda-version: "latest"
channels: conda-forge,robostack-staging,defaults
channel-priority: strict
activate-environment: build-env
auto-activate-base: false
auto-update-conda: false
show-channel-urls: true
- name: Install boa and build tools
if: steps.should_build.outputs.should_build == 'true'
run: |
conda install -c conda-forge boa conda-build
- name: Show environment info
if: steps.should_build.outputs.should_build == 'true'
run: |
conda info
conda list | grep -E "(boa|conda-build)"
echo "Platform: ${{ matrix.platform }}"
echo "OS: ${{ matrix.os }}"
- name: Build conda package
if: steps.should_build.outputs.should_build == 'true'
run: |
if [[ "${{ matrix.platform }}" == "osx-arm64" ]]; then
boa build -m ./recipes/conda_build_config.yaml -m ./recipes/macos_sdk_config.yaml ./recipes/ros-humble-unilabos-msgs
else
boa build -m ./recipes/conda_build_config.yaml ./recipes/ros-humble-unilabos-msgs
fi
- name: List built packages
if: steps.should_build.outputs.should_build == 'true'
run: |
echo "Built packages in conda-bld:"
find $CONDA_PREFIX/conda-bld -name "*.tar.bz2" | head -10
ls -la $CONDA_PREFIX/conda-bld/${{ matrix.platform }}/ || echo "${{ matrix.platform }} directory not found"
ls -la $CONDA_PREFIX/conda-bld/noarch/ || echo "noarch directory not found"
echo "CONDA_PREFIX: $CONDA_PREFIX"
echo "Full path would be: $CONDA_PREFIX/conda-bld/**/*.tar.bz2"
- name: Prepare artifacts for upload
if: steps.should_build.outputs.should_build == 'true'
run: |
mkdir -p ${{ runner.temp }}/conda-packages
find $CONDA_PREFIX/conda-bld -name "*.tar.bz2" -exec cp {} ${{ runner.temp }}/conda-packages/ \;
echo "Copied files to temp directory:"
ls -la ${{ runner.temp }}/conda-packages/
- name: Upload conda package artifacts
if: steps.should_build.outputs.should_build == 'true'
uses: actions/upload-artifact@v4
with:
name: conda-package-${{ matrix.platform }}
path: ${{ runner.temp }}/conda-packages
if-no-files-found: warn
retention-days: 30
- name: Create release assets (on tags)
if: steps.should_build.outputs.should_build == 'true' && startsWith(github.ref, 'refs/tags/')
run: |
mkdir -p release-assets
find $CONDA_PREFIX/conda-bld -name "*.tar.bz2" -exec cp {} release-assets/ \;
- name: Upload to release
if: steps.should_build.outputs.should_build == 'true' && startsWith(github.ref, 'refs/tags/')
uses: softprops/action-gh-release@v1
with:
files: release-assets/*
draft: false
prerelease: false

6
.gitignore vendored
View File

@@ -1,3 +1,5 @@
configs/
temp/
## Python
# Byte-compiled / optimized / DLL files
@@ -234,3 +236,7 @@ CATKIN_IGNORE
*.graphml
unilabos/device_mesh/view_robot.rviz
# Certs
**/.certs

View File

@@ -49,7 +49,7 @@ conda env update --file unilabos-[YOUR_OS].yml -n environment_name
# Currently, you need to install the `unilabos_msgs` package
# You can download the system-specific package from the Release page
conda install ros-humble-unilabos-msgs-0.9.5-xxxxx.tar.bz2
conda install ros-humble-unilabos-msgs-0.9.10-xxxxx.tar.bz2
# Install PyLabRobot and other prerequisites
git clone https://github.com/PyLabRobot/pylabrobot plr_repo

View File

@@ -49,7 +49,7 @@ conda env update --file unilabos-[YOUR_OS].yml -n 环境名
# 现阶段,需要安装 `unilabos_msgs` 包
# 可以前往 Release 页面下载系统对应的包进行安装
conda install ros-humble-unilabos-msgs-0.9.5-xxxxx.tar.bz2
conda install ros-humble-unilabos-msgs-0.9.11-xxxxx.tar.bz2
# 安装PyLabRobot等前置
git clone https://github.com/PyLabRobot/pylabrobot plr_repo

View File

@@ -1,3 +1,6 @@
channel_sources:
- robostack,robostack-staging,conda-forge,defaults
gazebo:
- '11'
libpqxx:

View File

@@ -1,6 +1,6 @@
package:
name: ros-humble-unilabos-msgs
version: 0.9.5
version: 0.9.11
source:
path: ../../unilabos_msgs
folder: ros-humble-unilabos-msgs/src/work
@@ -50,12 +50,12 @@ requirements:
- robostack-staging::ros-humble-rosidl-default-generators
- robostack-staging::ros-humble-std-msgs
- robostack-staging::ros-humble-geometry-msgs
- robostack-staging::ros2-distro-mutex=0.6.*
- robostack-staging::ros2-distro-mutex=0.5.*
run:
- robostack-staging::ros-humble-action-msgs
- robostack-staging::ros-humble-ros-workspace
- robostack-staging::ros-humble-rosidl-default-runtime
- robostack-staging::ros-humble-std-msgs
- robostack-staging::ros-humble-geometry-msgs
- robostack-staging::ros2-distro-mutex=0.6.*
# - robostack-staging::ros2-distro-mutex=0.6.*
- sel(osx and x86_64): __osx >={{ MACOSX_DEPLOYMENT_TARGET|default('10.14') }}

View File

@@ -1,6 +1,6 @@
package:
name: unilabos
version: "0.9.5"
version: "0.9.11"
source:
path: ../..

View File

@@ -4,7 +4,7 @@ package_name = 'unilabos'
setup(
name=package_name,
version='0.9.5',
version='0.9.11',
packages=find_packages(),
include_package_data=True,
install_requires=['setuptools'],
@@ -17,6 +17,7 @@ setup(
entry_points={
'console_scripts': [
"unilab = unilabos.app.main:main",
"unilab-register = unilabos.app.register:main"
],
},
)

View File

@@ -2,4 +2,10 @@
```bash
ros2 action send_goal /devices/host_node/create_resource_detailed unilabos_msgs/action/_resource_create_from_outer/ResourceCreateFromOuter "{ resources: [ { 'category': '', 'children': [], 'config': { 'type': 'Well', 'size_x': 6.86, 'size_y': 6.86, 'size_z': 10.67, 'rotation': { 'x': 0, 'y': 0, 'z': 0, 'type': 'Rotation' }, 'category': 'well', 'model': null, 'max_volume': 360, 'material_z_thickness': 0.5, 'compute_volume_from_height': null, 'compute_height_from_volume': null, 'bottom_type': 'flat', 'cross_section_type': 'circle' }, 'data': { 'liquids': [], 'pending_liquids': [], 'liquid_history': [] }, 'id': 'plate_well_11_7', 'name': 'plate_well_11_7', 'pose': { 'orientation': { 'w': 1.0, 'x': 0.0, 'y': 0.0, 'z': 0.0 }, 'position': { 'x': 0.0, 'y': 0.0, 'z': 0.0 } }, 'sample_id': '', 'parent': 'plate', 'type': 'device' } ], device_ids: [ 'PLR_STATION' ], bind_parent_ids: [ 'plate' ], bind_locations: [ { 'x': 0.0, 'y': 0.0, 'z': 0.0 } ], other_calling_params: [ '{}' ] }"
```
使用mock_all.json启动重新捕获MockContainerForChiller1
```bash
ros2 action send_goal /devices/host_node/create_resource unilabos_msgs/action/_resource_create_from_outer_easy/ResourceCreateFromOuterEasy "{ 'res_id': 'MockContainerForChiller1', 'device_id': 'MockChiller1', 'class_name': 'container', 'parent': 'MockChiller1', 'bind_locations': { 'x': 0.0, 'y': 0.0, 'z': 0.0 }, 'liquid_input_slot': [ -1 ], 'liquid_type': [ 'CuCl2' ], 'liquid_volume': [ 100.0 ], 'slot_on_deck': '' }"
```

View File

@@ -0,0 +1,563 @@
{
"nodes": [
{
"id": "AddProtocolTestStation",
"name": "添加协议测试站",
"children": [
"transfer_pump_1",
"transfer_pump_2",
"multiway_valve_1",
"multiway_valve_2",
"stirrer_1",
"stirrer_2",
"flask_DMF",
"flask_ethyl_acetate",
"flask_methanol",
"flask_acetone",
"flask_water",
"flask_air",
"main_reactor",
"secondary_reactor",
"waste_workup",
"collection_bottle_1",
"collection_bottle_2"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": ["PumpTransferProtocol", "AddProtocol"]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "转移泵1",
"children": [],
"parent": "AddProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 250,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 25.0,
"transfer_rate": 5.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "transfer_pump_2",
"name": "转移泵2",
"children": [],
"parent": "AddProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 750,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP2",
"max_volume": 25.0,
"transfer_rate": 5.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "multiway_valve_1",
"name": "试剂分配阀",
"children": [],
"parent": "AddProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 250,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "multiway_valve_2",
"name": "反应器分配阀",
"children": [],
"parent": "AddProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 750,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE2",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "stirrer_1",
"name": "主反应器搅拌器",
"children": [],
"parent": "AddProtocolTestStation",
"type": "device",
"class": "virtual_stirrer",
"position": {
"x": 600,
"y": 450,
"z": 0
},
"config": {
"port": "VIRTUAL_STIRRER1",
"max_speed": 1500.0,
"default_speed": 300.0
},
"data": {
"speed": 0.0,
"status": "Stopped"
}
},
{
"id": "stirrer_2",
"name": "副反应器搅拌器",
"children": [],
"parent": "AddProtocolTestStation",
"type": "device",
"class": "virtual_stirrer",
"position": {
"x": 900,
"y": 450,
"z": 0
},
"config": {
"port": "VIRTUAL_STIRRER2",
"max_speed": 1500.0,
"default_speed": 300.0
},
"data": {
"speed": 0.0,
"status": "Stopped"
}
},
{
"id": "flask_DMF",
"name": "DMF试剂瓶",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 50,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "DMF",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_ethyl_acetate",
"name": "乙酸乙酯试剂瓶",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 150,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethyl_acetate",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_methanol",
"name": "甲醇试剂瓶",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 250,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "methanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_acetone",
"name": "丙酮试剂瓶",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 350,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "acetone",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_water",
"name": "蒸馏水瓶",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 450,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "water",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 550,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "main_reactor",
"name": "主反应器",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "secondary_reactor",
"name": "副反应器",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 900,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "waste_workup",
"name": "废液处理瓶",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 600,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_1",
"name": "收集瓶1",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_2",
"name": "收集瓶2",
"children": [],
"parent": "AddProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 900,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump1_valve1",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_pump2_valve2",
"source": "transfer_pump_2",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"transfer_pump_2": "transferpump",
"multiway_valve_2": "transferpump"
}
},
{
"id": "link_valve1_valve2",
"source": "multiway_valve_1",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"multiway_valve_1": "8",
"multiway_valve_2": "1"
}
},
{
"id": "link_valve1_DMF",
"source": "multiway_valve_1",
"target": "flask_DMF",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_DMF": "outlet"
}
},
{
"id": "link_valve1_ethyl_acetate",
"source": "multiway_valve_1",
"target": "flask_ethyl_acetate",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_ethyl_acetate": "outlet"
}
},
{
"id": "link_valve1_methanol",
"source": "multiway_valve_1",
"target": "flask_methanol",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_methanol": "outlet"
}
},
{
"id": "link_valve1_acetone",
"source": "multiway_valve_1",
"target": "flask_acetone",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_acetone": "outlet"
}
},
{
"id": "link_valve1_water",
"source": "multiway_valve_1",
"target": "flask_water",
"type": "fluid",
"port": {
"multiway_valve_1": "5",
"flask_water": "outlet"
}
},
{
"id": "link_valve1_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "6",
"flask_air": "top"
}
},
{
"id": "link_valve2_main_reactor",
"source": "multiway_valve_2",
"target": "main_reactor",
"type": "fluid",
"port": {
"multiway_valve_2": "2",
"main_reactor": "inlet"
}
},
{
"id": "link_valve2_secondary_reactor",
"source": "multiway_valve_2",
"target": "secondary_reactor",
"type": "fluid",
"port": {
"multiway_valve_2": "3",
"secondary_reactor": "inlet"
}
},
{
"id": "link_valve2_waste",
"source": "multiway_valve_2",
"target": "waste_workup",
"type": "fluid",
"port": {
"multiway_valve_2": "6",
"waste_workup": "inlet"
}
},
{
"id": "link_valve2_collection1",
"source": "multiway_valve_2",
"target": "collection_bottle_1",
"type": "fluid",
"port": {
"multiway_valve_2": "7",
"collection_bottle_1": "inlet"
}
},
{
"id": "link_valve2_collection2",
"source": "multiway_valve_2",
"target": "collection_bottle_2",
"type": "fluid",
"port": {
"multiway_valve_2": "8",
"collection_bottle_2": "inlet"
}
},
{
"id": "link_stirrer1_main_reactor",
"source": "stirrer_1",
"target": "main_reactor",
"type": "mechanical",
"port": {
"stirrer_1": "stirrer_head",
"main_reactor": "stirrer_port"
}
},
{
"id": "link_stirrer2_secondary_reactor",
"source": "stirrer_2",
"target": "secondary_reactor",
"type": "mechanical",
"port": {
"stirrer_2": "stirrer_head",
"secondary_reactor": "stirrer_port"
}
}
]
}

View File

@@ -0,0 +1,438 @@
{
"nodes": [
{
"id": "CentrifugeProtocolTestStation",
"name": "离心协议测试站",
"children": [
"transfer_pump_1",
"transfer_pump_2",
"multiway_valve_1",
"multiway_valve_2",
"centrifuge_1",
"reaction_mixture",
"centrifuge_tube",
"collection_bottle_1",
"flask_water",
"flask_ethanol",
"flask_acetone",
"flask_air",
"waste_workup"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": [
"CentrifugeProtocol",
"PumpTransferProtocol"
]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "主转移泵",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 200,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 25.0,
"transfer_rate": 2.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "transfer_pump_2",
"name": "副转移泵",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 400,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP2",
"max_volume": 25.0,
"transfer_rate": 2.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "multiway_valve_1",
"name": "溶剂分配阀",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 200,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "multiway_valve_2",
"name": "样品分配阀",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 400,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE2",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "centrifuge_1",
"name": "离心机",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "device",
"class": "virtual_centrifuge",
"position": {
"x": 600,
"y": 350,
"z": 0
},
"config": {
"port": "VIRTUAL_CENTRIFUGE1",
"max_speed": 15000.0,
"max_temp": 40.0,
"min_temp": 4.0
},
"data": {
"status": "Idle"
}
},
{
"id": "reaction_mixture",
"name": "反应混合物",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 500,
"z": 0
},
"config": {
"max_volume": 500.0
},
"data": {
"liquid": [
{
"liquid_type": "cell_suspension",
"liquid_volume": 200.0
}
]
}
},
{
"id": "centrifuge_tube",
"name": "离心管",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 450,
"z": 0
},
"config": {
"max_volume": 15.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_1",
"name": "上清液收集瓶",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 500,
"z": 0
},
"config": {
"max_volume": 500.0
},
"data": {
"liquid": []
}
},
{
"id": "flask_water",
"name": "蒸馏水瓶",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 200,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "water",
"liquid_volume": 900.0
}
]
}
},
{
"id": "flask_ethanol",
"name": "乙醇清洗瓶",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 300,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_acetone",
"name": "丙酮清洗瓶",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 400,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "acetone",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "waste_workup",
"name": "废液瓶",
"children": [],
"parent": "CentrifugeProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 550,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump1_valve1",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_pump2_valve2",
"source": "transfer_pump_2",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"transfer_pump_2": "transferpump",
"multiway_valve_2": "transferpump"
}
},
{
"id": "link_valve1_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_air": "top"
}
},
{
"id": "link_valve1_water",
"source": "multiway_valve_1",
"target": "flask_water",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_water": "outlet"
}
},
{
"id": "link_valve1_ethanol",
"source": "multiway_valve_1",
"target": "flask_ethanol",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_ethanol": "outlet"
}
},
{
"id": "link_valve1_acetone",
"source": "multiway_valve_1",
"target": "flask_acetone",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_acetone": "outlet"
}
},
{
"id": "link_valve1_valve2",
"source": "multiway_valve_1",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"multiway_valve_1": "5",
"multiway_valve_2": "1"
}
},
{
"id": "link_valve2_reaction_mixture",
"source": "multiway_valve_2",
"target": "reaction_mixture",
"type": "fluid",
"port": {
"multiway_valve_2": "2",
"reaction_mixture": "inlet"
}
},
{
"id": "link_valve2_centrifuge_tube",
"source": "multiway_valve_2",
"target": "centrifuge_tube",
"type": "fluid",
"port": {
"multiway_valve_2": "3",
"centrifuge_tube": "inlet"
}
},
{
"id": "link_valve2_collection",
"source": "multiway_valve_2",
"target": "collection_bottle_1",
"type": "fluid",
"port": {
"multiway_valve_2": "4",
"collection_bottle_1": "inlet"
}
},
{
"id": "link_valve2_waste",
"source": "multiway_valve_2",
"target": "waste_workup",
"type": "fluid",
"port": {
"multiway_valve_2": "5",
"waste_workup": "inlet"
}
},
{
"id": "link_centrifuge1_centrifuge_tube",
"source": "centrifuge_1",
"target": "centrifuge_tube",
"type": "transport",
"port": {
"centrifuge_1": "centrifuge",
"centrifuge_tube": "centrifuge_port"
}
}
]
}

View File

@@ -0,0 +1,446 @@
{
"nodes": [
{
"id": "CleanVesselProtocolTestStation",
"name": "容器清洗协议测试站",
"children": [
"transfer_pump_1",
"transfer_pump_2",
"multiway_valve_1",
"multiway_valve_2",
"heatchill_1",
"flask_water",
"flask_acetone",
"flask_ethanol",
"flask_air",
"main_reactor",
"secondary_reactor",
"waste_workup"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": [
"CleanVesselProtocol",
"PumpTransferProtocol",
"HeatChillProtocol",
"HeatChillStartProtocol",
"HeatChillStopProtocol"
]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "主清洗泵",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 250,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 25.0,
"transfer_rate": 2.5
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "transfer_pump_2",
"name": "副清洗泵",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 450,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP2",
"max_volume": 25.0,
"transfer_rate": 2.5
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "multiway_valve_1",
"name": "溶剂分配阀",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 250,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "multiway_valve_2",
"name": "容器分配阀",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 450,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE2",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "heatchill_1",
"name": "加热清洗器",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "device",
"class": "virtual_heatchill",
"position": {
"x": 600,
"y": 350,
"z": 0
},
"config": {
"port": "VIRTUAL_HEATCHILL1",
"max_temp": 100.0,
"min_temp": 10.0,
"max_stir_speed": 500.0
},
"data": {
"status": "Idle"
}
},
{
"id": "flask_water",
"name": "蒸馏水瓶",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "container",
"class": "container",
"position": {
"x": 50,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "water",
"liquid_volume": 900.0
}
]
}
},
{
"id": "flask_acetone",
"name": "丙酮清洗瓶",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "container",
"class": "container",
"position": {
"x": 150,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "acetone",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_ethanol",
"name": "乙醇清洗瓶",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "container",
"class": "container",
"position": {
"x": 250,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "container",
"class": "container",
"position": {
"x": 350,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "main_reactor",
"name": "主反应器",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "container",
"class": "container",
"position": {
"x": 600,
"y": 450,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"liquid_type": "residue",
"liquid_volume": 50.0
}
]
}
},
{
"id": "secondary_reactor",
"name": "副反应器",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "container",
"class": "container",
"position": {
"x": 800,
"y": 450,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "organic_residue",
"liquid_volume": 30.0
}
]
}
},
{
"id": "waste_workup",
"name": "清洗废液瓶",
"children": [],
"parent": "CleanVesselProtocolTestStation",
"type": "container",
"class": "container",
"position": {
"x": 700,
"y": 550,
"z": 0
},
"config": {
"max_volume": 3000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump1_to_valve1",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_pump2_to_valve2",
"source": "transfer_pump_2",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"transfer_pump_2": "transferpump",
"multiway_valve_2": "transferpump"
}
},
{
"id": "link_valve1_to_water",
"source": "multiway_valve_1",
"target": "flask_water",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_water": "top"
}
},
{
"id": "link_valve1_to_acetone",
"source": "multiway_valve_1",
"target": "flask_acetone",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_acetone": "top"
}
},
{
"id": "link_valve1_to_ethanol",
"source": "multiway_valve_1",
"target": "flask_ethanol",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_ethanol": "top"
}
},
{
"id": "link_valve1_to_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "6",
"flask_air": "top"
}
},
{
"id": "link_valve1_to_valve2_for_cleaning",
"source": "multiway_valve_1",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"multiway_valve_2": "8"
}
},
{
"id": "link_valve2_to_main_reactor_in",
"source": "multiway_valve_2",
"target": "main_reactor",
"type": "fluid",
"port": {
"multiway_valve_2": "2",
"main_reactor": "top"
}
},
{
"id": "link_valve2_to_secondary_reactor_in",
"source": "multiway_valve_2",
"target": "secondary_reactor",
"type": "fluid",
"port": {
"multiway_valve_2": "3",
"secondary_reactor": "top"
}
},
{
"id": "link_main_reactor_out_to_valve2",
"source": "main_reactor",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"main_reactor": "bottom",
"multiway_valve_2": "6"
}
},
{
"id": "link_secondary_reactor_out_to_valve2",
"source": "secondary_reactor",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"secondary_reactor": "bottom",
"multiway_valve_2": "7"
}
},
{
"id": "link_valve2_to_waste",
"source": "multiway_valve_2",
"target": "waste_workup",
"type": "fluid",
"port": {
"multiway_valve_2": "4",
"waste_workup": "top"
}
},
{
"id": "link_heatchill1_to_main_reactor",
"source": "heatchill_1",
"target": "main_reactor",
"type": "mechanical",
"port": {
"heatchill_1": "heatchill",
"main_reactor": "bind"
}
},
{
"id": "link_heatchill1_to_secondary_reactor",
"source": "heatchill_1",
"target": "secondary_reactor",
"type": "mechanical",
"port": {
"heatchill_1": "heatchill",
"secondary_reactor": "bind"
}
}
]
}

View File

@@ -0,0 +1,367 @@
{
"nodes": [
{
"id": "DualValvePumpStation",
"name": "双阀门泵站",
"children": [
"transfer_pump_1",
"transfer_pump_2",
"multiway_valve_1",
"multiway_valve_2",
"flask_DMF",
"flask_ethyl_acetate",
"flask_methanol",
"flask_air",
"main_reactor",
"waste_workup",
"collection_bottle_1"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": ["PumpTransferProtocol"]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "转移泵1",
"children": [],
"parent": "DualValvePumpStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 300,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 25.0,
"transfer_rate": 5.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "transfer_pump_2",
"name": "转移泵2",
"children": [],
"parent": "DualValvePumpStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 700,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP2",
"max_volume": 25.0,
"transfer_rate": 5.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "multiway_valve_1",
"name": "第一个八通阀",
"children": [],
"parent": "DualValvePumpStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 300,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "multiway_valve_2",
"name": "第二个八通阀",
"children": [],
"parent": "DualValvePumpStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 700,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE2",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "flask_DMF",
"name": "DMF试剂瓶",
"children": [],
"parent": "DualValvePumpStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "DMF",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_ethyl_acetate",
"name": "乙酸乙酯试剂瓶",
"children": [],
"parent": "DualValvePumpStation",
"type": "container",
"class": null,
"position": {
"x": 200,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethyl_acetate",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_methanol",
"name": "甲醇试剂瓶",
"children": [],
"parent": "DualValvePumpStation",
"type": "container",
"class": null,
"position": {
"x": 300,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "methanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "DualValvePumpStation",
"type": "container",
"class": null,
"position": {
"x": 400,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "main_reactor",
"name": "主反应器",
"children": [],
"parent": "DualValvePumpStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "waste_workup",
"name": "废液处理瓶",
"children": [],
"parent": "DualValvePumpStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_1",
"name": "收集瓶1",
"children": [],
"parent": "DualValvePumpStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump1_valve1",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_pump2_valve2",
"source": "transfer_pump_2",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"transfer_pump_2": "transferpump",
"multiway_valve_2": "transferpump"
}
},
{
"id": "link_valve1_valve2",
"source": "multiway_valve_1",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"multiway_valve_1": "8",
"multiway_valve_2": "1"
}
},
{
"id": "link_valve1_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_air": "top"
}
},
{
"id": "link_valve1_DMF",
"source": "multiway_valve_1",
"target": "flask_DMF",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_DMF": "outlet"
}
},
{
"id": "link_valve1_ethyl_acetate",
"source": "multiway_valve_1",
"target": "flask_ethyl_acetate",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_ethyl_acetate": "outlet"
}
},
{
"id": "link_valve1_methanol",
"source": "multiway_valve_1",
"target": "flask_methanol",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_methanol": "outlet"
}
},
{
"id": "link_valve2_reactor",
"source": "multiway_valve_2",
"target": "main_reactor",
"type": "fluid",
"port": {
"multiway_valve_2": "5",
"main_reactor": "inlet"
}
},
{
"id": "link_valve2_waste",
"source": "multiway_valve_2",
"target": "waste_workup",
"type": "fluid",
"port": {
"multiway_valve_2": "6",
"waste_workup": "inlet"
}
},
{
"id": "link_valve2_collection",
"source": "multiway_valve_2",
"target": "collection_bottle_1",
"type": "fluid",
"port": {
"multiway_valve_2": "7",
"collection_bottle_1": "inlet"
}
}
]
}

View File

@@ -0,0 +1,557 @@
{
"nodes": [
{
"id": "EvacuateRefillTestStation",
"name": "抽真空充气测试站",
"children": [
"transfer_pump_1",
"transfer_pump_2",
"multiway_valve_1",
"multiway_valve_2",
"flask_DMF",
"flask_ethyl_acetate",
"flask_methanol",
"flask_air",
"vacuum_pump_1",
"gas_source_nitrogen",
"gas_source_air",
"solenoid_valve_vacuum",
"solenoid_valve_gas",
"main_reactor",
"stirrer_1",
"waste_workup",
"collection_bottle_1"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": ["PumpTransferProtocol", "EvacuateAndRefillProtocol"]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "转移泵1",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 300,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 25.0,
"transfer_rate": 5.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "transfer_pump_2",
"name": "转移泵2",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 700,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP2",
"max_volume": 25.0,
"transfer_rate": 5.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "multiway_valve_1",
"name": "第一个八通阀",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 300,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "multiway_valve_2",
"name": "第二个八通阀",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 700,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE2",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "vacuum_pump_1",
"name": "真空泵1",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_vacuum_pump",
"position": {
"x": 150,
"y": 200,
"z": 0
},
"config": {
"port": "VIRTUAL_VACUUM1",
"max_pressure": -0.9
},
"data": {
"status": "OFF",
"pressure": 0.0
}
},
{
"id": "gas_source_nitrogen",
"name": "氮气源",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_gas_source",
"position": {
"x": 850,
"y": 200,
"z": 0
},
"config": {
"port": "VIRTUAL_GAS_N2",
"gas_type": "nitrogen",
"max_pressure": 5.0
},
"data": {
"status": "OFF",
"flow_rate": 0.0
}
},
{
"id": "gas_source_air",
"name": "空气源",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_gas_source",
"position": {
"x": 950,
"y": 200,
"z": 0
},
"config": {
"port": "VIRTUAL_GAS_AIR",
"gas_type": "air",
"max_pressure": 3.0
},
"data": {
"status": "OFF",
"flow_rate": 0.0
}
},
{
"id": "solenoid_valve_vacuum",
"name": "真空电磁阀",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_solenoid_valve",
"position": {
"x": 225,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_SOLENOID_VACUUM"
},
"data": {
"valve_position": "CLOSED"
}
},
{
"id": "solenoid_valve_gas",
"name": "气源电磁阀",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_solenoid_valve",
"position": {
"x": 775,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_SOLENOID_GAS"
},
"data": {
"valve_position": "CLOSED"
}
},
{
"id": "flask_DMF",
"name": "DMF试剂瓶",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "DMF",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_ethyl_acetate",
"name": "乙酸乙酯试剂瓶",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "container",
"class": null,
"position": {
"x": 200,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethyl_acetate",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_methanol",
"name": "甲醇试剂瓶",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "container",
"class": null,
"position": {
"x": 300,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "methanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "container",
"class": null,
"position": {
"x": 400,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "main_reactor",
"name": "主反应器",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "stirrer_1",
"name": "搅拌器1",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "device",
"class": "virtual_stirrer",
"position": {
"x": 600,
"y": 450,
"z": 0
},
"config": {
"port": "VIRTUAL_STIRRER1",
"max_speed": 1500.0
},
"data": {
"speed": 0.0,
"status": "OFF"
}
},
{
"id": "waste_workup",
"name": "废液处理瓶",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_1",
"name": "收集瓶1",
"children": [],
"parent": "EvacuateRefillTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump1_valve1",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_pump2_valve2",
"source": "transfer_pump_2",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"transfer_pump_2": "transferpump",
"multiway_valve_2": "transferpump"
}
},
{
"id": "link_valve1_valve2",
"source": "multiway_valve_1",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"multiway_valve_1": "8",
"multiway_valve_2": "1"
}
},
{
"id": "link_vacuum_solenoid",
"source": "vacuum_pump_1",
"target": "solenoid_valve_vacuum",
"type": "fluid",
"port": {
"vacuum_pump_1": "outlet",
"solenoid_valve_vacuum": "inlet"
}
},
{
"id": "link_solenoid_vacuum_valve1",
"source": "solenoid_valve_vacuum",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"solenoid_valve_vacuum": "outlet",
"multiway_valve_1": "7"
}
},
{
"id": "link_gas_solenoid",
"source": "gas_source_nitrogen",
"target": "solenoid_valve_gas",
"type": "fluid",
"port": {
"gas_source_nitrogen": "outlet",
"solenoid_valve_gas": "inlet"
}
},
{
"id": "link_solenoid_gas_valve2",
"source": "solenoid_valve_gas",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"solenoid_valve_gas": "outlet",
"multiway_valve_2": "8"
}
},
{
"id": "link_air_source_valve2",
"source": "gas_source_air",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"gas_source_air": "outlet",
"multiway_valve_2": "2"
}
},
{
"id": "link_valve1_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_air": "top"
}
},
{
"id": "link_valve1_DMF",
"source": "multiway_valve_1",
"target": "flask_DMF",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_DMF": "outlet"
}
},
{
"id": "link_valve1_ethyl_acetate",
"source": "multiway_valve_1",
"target": "flask_ethyl_acetate",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_ethyl_acetate": "outlet"
}
},
{
"id": "link_valve1_methanol",
"source": "multiway_valve_1",
"target": "flask_methanol",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_methanol": "outlet"
}
},
{
"id": "link_valve2_reactor",
"source": "multiway_valve_2",
"target": "main_reactor",
"type": "fluid",
"port": {
"multiway_valve_2": "5",
"main_reactor": "inlet"
}
},
{
"id": "link_valve2_waste",
"source": "multiway_valve_2",
"target": "waste_workup",
"type": "fluid",
"port": {
"multiway_valve_2": "6",
"waste_workup": "inlet"
}
},
{
"id": "link_valve2_collection",
"source": "multiway_valve_2",
"target": "collection_bottle_1",
"type": "fluid",
"port": {
"multiway_valve_2": "7",
"collection_bottle_1": "inlet"
}
},
{
"id": "link_stirrer_reactor",
"source": "stirrer_1",
"target": "main_reactor",
"type": "mechanical",
"port": {
"stirrer_1": "stirrer",
"main_reactor": "stirrer"
}
}
]
}

View File

@@ -0,0 +1,503 @@
{
"nodes": [
{
"id": "EvaporateProtocolTestStation",
"name": "蒸发协议测试站",
"children": [
"transfer_pump_1",
"transfer_pump_2",
"multiway_valve_1",
"multiway_valve_2",
"rotavap_1",
"heatchill_1",
"reaction_mixture",
"rotavap_flask",
"rotavap_condenser",
"flask_distillate",
"flask_ethanol",
"flask_acetone",
"flask_water",
"flask_air",
"waste_workup"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": [
"EvaporateProtocol",
"PumpTransferProtocol",
"HeatChillProtocol",
"HeatChillStartProtocol",
"HeatChillStopProtocol"
]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "主转移泵",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 200,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 25.0,
"transfer_rate": 2.5
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "transfer_pump_2",
"name": "副转移泵",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 400,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP2",
"max_volume": 25.0,
"transfer_rate": 2.5
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "multiway_valve_1",
"name": "溶剂分配阀",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 200,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "multiway_valve_2",
"name": "容器分配阀",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 400,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE2",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "rotavap_1",
"name": "旋转蒸发仪",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "device",
"class": "virtual_rotavap",
"position": {
"x": 700,
"y": 350,
"z": 0
},
"config": {
"port": "VIRTUAL_ROTAVAP1",
"max_temp": 180.0,
"max_rotation_speed": 280.0
},
"data": {
"status": "Ready"
}
},
{
"id": "heatchill_1",
"name": "预加热器",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "device",
"class": "virtual_heatchill",
"position": {
"x": 100,
"y": 550,
"z": 0
},
"config": {
"port": "VIRTUAL_HEATCHILL1",
"max_temp": 100.0,
"min_temp": 10.0,
"max_stir_speed": 500.0
},
"data": {
"status": "Idle"
}
},
{
"id": "reaction_mixture",
"name": "反应混合物",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 450,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "reaction_mixture",
"liquid_volume": 600.0
}
]
}
},
{
"id": "rotavap_flask",
"name": "旋蒸样品瓶",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 450,
"z": 0
},
"config": {
"max_volume": 500.0
},
"data": {
"liquid": []
}
},
{
"id": "rotavap_condenser",
"name": "旋蒸冷凝器",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 350,
"z": 0
},
"config": {
"max_volume": 500.0
},
"data": {
"liquid": []
}
},
{
"id": "flask_distillate",
"name": "溶剂回收瓶",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 450,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "flask_ethanol",
"name": "乙醇清洗瓶",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 50,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_acetone",
"name": "丙酮清洗瓶",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 150,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "acetone",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_water",
"name": "蒸馏水瓶",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 250,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "water",
"liquid_volume": 900.0
}
]
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 350,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "waste_workup",
"name": "废液瓶",
"children": [],
"parent": "EvaporateProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 550,
"z": 0
},
"config": {
"max_volume": 3000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump1_valve1",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_pump2_valve2",
"source": "transfer_pump_2",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"transfer_pump_2": "transferpump",
"multiway_valve_2": "transferpump"
}
},
{
"id": "link_valve1_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_air": "top"
}
},
{
"id": "link_valve1_ethanol",
"source": "multiway_valve_1",
"target": "flask_ethanol",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_ethanol": "outlet"
}
},
{
"id": "link_valve1_acetone",
"source": "multiway_valve_1",
"target": "flask_acetone",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_acetone": "outlet"
}
},
{
"id": "link_valve1_water",
"source": "multiway_valve_1",
"target": "flask_water",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_water": "outlet"
}
},
{
"id": "link_valve1_valve2",
"source": "multiway_valve_1",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"multiway_valve_1": "5",
"multiway_valve_2": "1"
}
},
{
"id": "link_valve2_reaction_mixture",
"source": "multiway_valve_2",
"target": "reaction_mixture",
"type": "fluid",
"port": {
"multiway_valve_2": "2",
"reaction_mixture": "inlet"
}
},
{
"id": "link_valve2_rotavap_flask",
"source": "multiway_valve_2",
"target": "rotavap_flask",
"type": "fluid",
"port": {
"multiway_valve_2": "3",
"rotavap_flask": "inlet"
}
},
{
"id": "link_valve2_rotavap_condenser",
"source": "multiway_valve_2",
"target": "rotavap_condenser",
"type": "fluid",
"port": {
"multiway_valve_2": "4",
"rotavap_condenser": "inlet"
}
},
{
"id": "link_valve2_distillate",
"source": "multiway_valve_2",
"target": "flask_distillate",
"type": "fluid",
"port": {
"multiway_valve_2": "5",
"flask_distillate": "inlet"
}
},
{
"id": "link_valve2_waste",
"source": "multiway_valve_2",
"target": "waste_workup",
"type": "fluid",
"port": {
"multiway_valve_2": "6",
"waste_workup": "inlet"
}
},
{
"id": "link_rotavap1_rotavap_flask",
"source": "rotavap_1",
"target": "rotavap_flask",
"type": "fluid",
"port": {
"rotavap_1": "rotavap-sample",
"rotavap_flask": "rotavap_port"
}
},
{
"id": "link_heatchill1_reaction_mixture",
"source": "heatchill_1",
"target": "reaction_mixture",
"type": "mechanical",
"port": {
"heatchill_1": "heatchill",
"reaction_mixture": "heating_jacket"
}
}
]
}

View File

@@ -0,0 +1,534 @@
{
"nodes": [
{
"id": "FilterProtocolTestStation",
"name": "过滤协议测试站",
"children": [
"transfer_pump_1",
"transfer_pump_2",
"multiway_valve_1",
"multiway_valve_2",
"filter_1",
"heatchill_1",
"reaction_mixture",
"filter_vessel",
"filtrate_vessel",
"collection_bottle_1",
"collection_bottle_2",
"flask_water",
"flask_ethanol",
"flask_acetone",
"flask_air",
"waste_workup"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": [
"FilterProtocol",
"PumpTransferProtocol",
"HeatChillProtocol",
"HeatChillStartProtocol",
"HeatChillStopProtocol"
]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "主转移泵",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 200,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 25.0,
"transfer_rate": 2.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "transfer_pump_2",
"name": "副转移泵",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 400,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP2",
"max_volume": 25.0,
"transfer_rate": 2.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "multiway_valve_1",
"name": "溶剂分配阀",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 200,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "multiway_valve_2",
"name": "样品分配阀",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 400,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE2",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "filter_1",
"name": "过滤器",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "device",
"class": "virtual_filter",
"position": {
"x": 600,
"y": 350,
"z": 0
},
"config": {
"port": "VIRTUAL_FILTER1",
"max_temp": 100.0,
"max_stir_speed": 1000.0,
"max_volume": 500.0
},
"data": {
"status": "Idle"
}
},
{
"id": "heatchill_1",
"name": "加热搅拌器",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "device",
"class": "virtual_heatchill",
"position": {
"x": 600,
"y": 450,
"z": 0
},
"config": {
"port": "VIRTUAL_HEATCHILL1",
"max_temp": 100.0,
"min_temp": 4.0,
"max_stir_speed": 1000.0
},
"data": {
"status": "Idle"
}
},
{
"id": "reaction_mixture",
"name": "反应混合物",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "cell_suspension",
"liquid_volume": 200.0
}
]
}
},
{
"id": "filter_vessel",
"name": "过滤器容器",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 550,
"z": 0
},
"config": {
"max_volume": 500.0
},
"data": {
"liquid": []
}
},
{
"id": "filtrate_vessel",
"name": "滤液收集容器",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 500,
"z": 0
},
"config": {
"max_volume": 500.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_1",
"name": "收集瓶1",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_2",
"name": "收集瓶2",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 900,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "flask_water",
"name": "蒸馏水瓶",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 200,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "water",
"liquid_volume": 900.0
}
]
}
},
{
"id": "flask_ethanol",
"name": "乙醇清洗瓶",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 300,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_acetone",
"name": "丙酮清洗瓶",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 400,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "acetone",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "waste_workup",
"name": "废液瓶",
"children": [],
"parent": "FilterProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 600,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump1_valve1",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_pump2_valve2",
"source": "transfer_pump_2",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"transfer_pump_2": "transferpump",
"multiway_valve_2": "transferpump"
}
},
{
"id": "link_valve1_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_air": "top"
}
},
{
"id": "link_valve1_water",
"source": "multiway_valve_1",
"target": "flask_water",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_water": "outlet"
}
},
{
"id": "link_valve1_ethanol",
"source": "multiway_valve_1",
"target": "flask_ethanol",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_ethanol": "outlet"
}
},
{
"id": "link_valve1_acetone",
"source": "multiway_valve_1",
"target": "flask_acetone",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_acetone": "outlet"
}
},
{
"id": "link_valve1_valve2",
"source": "multiway_valve_1",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"multiway_valve_1": "5",
"multiway_valve_2": "1"
}
},
{
"id": "link_valve2_reaction_mixture",
"source": "multiway_valve_2",
"target": "reaction_mixture",
"type": "fluid",
"port": {
"multiway_valve_2": "2",
"reaction_mixture": "inlet"
}
},
{
"id": "link_valve2_filter_vessel",
"source": "multiway_valve_2",
"target": "filter_vessel",
"type": "fluid",
"port": {
"multiway_valve_2": "3",
"filter_vessel": "inlet"
}
},
{
"id": "link_valve2_filtrate_vessel",
"source": "multiway_valve_2",
"target": "filtrate_vessel",
"type": "fluid",
"port": {
"multiway_valve_2": "4",
"filtrate_vessel": "inlet"
}
},
{
"id": "link_valve2_collection1",
"source": "multiway_valve_2",
"target": "collection_bottle_1",
"type": "fluid",
"port": {
"multiway_valve_2": "5",
"collection_bottle_1": "inlet"
}
},
{
"id": "link_valve2_collection2",
"source": "multiway_valve_2",
"target": "collection_bottle_2",
"type": "fluid",
"port": {
"multiway_valve_2": "6",
"collection_bottle_2": "inlet"
}
},
{
"id": "link_valve2_waste",
"source": "multiway_valve_2",
"target": "waste_workup",
"type": "fluid",
"port": {
"multiway_valve_2": "7",
"waste_workup": "inlet"
}
},
{
"id": "link_filter1_filter_vessel",
"source": "filter_1",
"target": "filter_vessel",
"type": "transport",
"port": {
"filter_1": "filter",
"filter_vessel": "filter_port"
}
},
{
"id": "link_heatchill1_filter_vessel",
"source": "heatchill_1",
"target": "filter_vessel",
"type": "mechanical",
"port": {
"heatchill_1": "heatchill",
"filter_vessel": "heating_jacket"
}
}
]
}

View File

@@ -0,0 +1,671 @@
{
"nodes": [
{
"id": "HeatChillProtocolTestStation",
"name": "加热冷却协议测试站",
"children": [
"transfer_pump_1",
"transfer_pump_2",
"multiway_valve_1",
"multiway_valve_2",
"stirrer_1",
"stirrer_2",
"heatchill_1",
"heatchill_2",
"flask_DMF",
"flask_ethyl_acetate",
"flask_methanol",
"flask_acetone",
"flask_water",
"flask_ethanol",
"flask_air",
"main_reactor",
"secondary_reactor",
"waste_workup",
"collection_bottle_1",
"collection_bottle_2"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": [
"PumpTransferProtocol",
"AddProtocol",
"HeatChillProtocol",
"HeatChillStartProtocol",
"HeatChillStopProtocol",
"DissolveProtocol"
]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "转移泵1",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 250,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 25.0,
"transfer_rate": 5.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "transfer_pump_2",
"name": "转移泵2",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 750,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP2",
"max_volume": 25.0,
"transfer_rate": 5.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "multiway_valve_1",
"name": "试剂分配阀",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 250,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "multiway_valve_2",
"name": "反应器分配阀",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 750,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE2",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "stirrer_1",
"name": "主反应器搅拌器",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "device",
"class": "virtual_stirrer",
"position": {
"x": 600,
"y": 450,
"z": 0
},
"config": {
"port": "VIRTUAL_STIRRER1",
"max_speed": 1500.0,
"default_speed": 300.0
},
"data": {
"speed": 0.0,
"status": "Stopped"
}
},
{
"id": "stirrer_2",
"name": "副反应器搅拌器",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "device",
"class": "virtual_stirrer",
"position": {
"x": 900,
"y": 450,
"z": 0
},
"config": {
"port": "VIRTUAL_STIRRER2",
"max_speed": 1500.0,
"default_speed": 300.0
},
"data": {
"speed": 0.0,
"status": "Stopped"
}
},
{
"id": "heatchill_1",
"name": "主反应器加热冷却器",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "device",
"class": "virtual_heatchill",
"position": {
"x": 550,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_HEATCHILL1",
"max_temp": 200.0,
"min_temp": -80.0,
"max_stir_speed": 1000.0
},
"data": {
"status": "Idle"
}
},
{
"id": "heatchill_2",
"name": "副反应器加热冷却器",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "device",
"class": "virtual_heatchill",
"position": {
"x": 850,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_HEATCHILL2",
"max_temp": 200.0,
"min_temp": -80.0,
"max_stir_speed": 1000.0
},
"data": {
"status": "Idle"
}
},
{
"id": "flask_DMF",
"name": "DMF试剂瓶",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 50,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "DMF",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_ethyl_acetate",
"name": "乙酸乙酯试剂瓶",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 150,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethyl_acetate",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_methanol",
"name": "甲醇试剂瓶",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 250,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "methanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_ethanol",
"name": "乙醇试剂瓶",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 650,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_acetone",
"name": "丙酮试剂瓶",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 350,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "acetone",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_water",
"name": "蒸馏水瓶",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 450,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "water",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 550,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "main_reactor",
"name": "主反应器",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "secondary_reactor",
"name": "副反应器",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 900,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "waste_workup",
"name": "废液处理瓶",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 600,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_1",
"name": "收集瓶1",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_2",
"name": "收集瓶2",
"children": [],
"parent": "HeatChillProtocolTestStation",
"type": "container",
"class": null,
"position": {
"x": 900,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump1_valve1",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_pump2_valve2",
"source": "transfer_pump_2",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"transfer_pump_2": "transferpump",
"multiway_valve_2": "transferpump"
}
},
{
"id": "link_valve1_valve2",
"source": "multiway_valve_1",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"multiway_valve_1": "8",
"multiway_valve_2": "1"
}
},
{
"id": "link_valve1_DMF",
"source": "multiway_valve_1",
"target": "flask_DMF",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_DMF": "outlet"
}
},
{
"id": "link_valve1_ethyl_acetate",
"source": "multiway_valve_1",
"target": "flask_ethyl_acetate",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_ethyl_acetate": "outlet"
}
},
{
"id": "link_valve1_methanol",
"source": "multiway_valve_1",
"target": "flask_methanol",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_methanol": "outlet"
}
},
{
"id": "link_valve1_acetone",
"source": "multiway_valve_1",
"target": "flask_acetone",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_acetone": "outlet"
}
},
{
"id": "link_valve1_water",
"source": "multiway_valve_1",
"target": "flask_water",
"type": "fluid",
"port": {
"multiway_valve_1": "5",
"flask_water": "outlet"
}
},
{
"id": "link_valve1_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "6",
"flask_air": "top"
}
},
{
"id": "link_valve2_main_reactor",
"source": "multiway_valve_2",
"target": "main_reactor",
"type": "fluid",
"port": {
"multiway_valve_2": "2",
"main_reactor": "inlet"
}
},
{
"id": "link_valve2_secondary_reactor",
"source": "multiway_valve_2",
"target": "secondary_reactor",
"type": "fluid",
"port": {
"multiway_valve_2": "3",
"secondary_reactor": "inlet"
}
},
{
"id": "link_valve2_waste",
"source": "multiway_valve_2",
"target": "waste_workup",
"type": "fluid",
"port": {
"multiway_valve_2": "6",
"waste_workup": "inlet"
}
},
{
"id": "link_valve2_collection1",
"source": "multiway_valve_2",
"target": "collection_bottle_1",
"type": "fluid",
"port": {
"multiway_valve_2": "7",
"collection_bottle_1": "inlet"
}
},
{
"id": "link_valve2_collection2",
"source": "multiway_valve_2",
"target": "collection_bottle_2",
"type": "fluid",
"port": {
"multiway_valve_2": "8",
"collection_bottle_2": "inlet"
}
},
{
"id": "link_stirrer1_main_reactor",
"source": "stirrer_1",
"target": "main_reactor",
"type": "mechanical",
"port": {
"stirrer_1": "stirrer_head",
"main_reactor": "stirrer_port"
}
},
{
"id": "link_stirrer2_secondary_reactor",
"source": "stirrer_2",
"target": "secondary_reactor",
"type": "mechanical",
"port": {
"stirrer_2": "stirrer_head",
"secondary_reactor": "stirrer_port"
}
},
{
"id": "link_heatchill1_main_reactor",
"source": "heatchill_1",
"target": "main_reactor",
"type": "thermal",
"port": {
"heatchill_1": "heating_surface",
"main_reactor": "heating_jacket"
}
},
{
"id": "link_heatchill2_secondary_reactor",
"source": "heatchill_2",
"target": "secondary_reactor",
"type": "thermal",
"port": {
"heatchill_2": "heating_surface",
"secondary_reactor": "heating_jacket"
}
},
{
"id": "link_valve1_ethanol",
"source": "multiway_valve_1",
"target": "flask_ethanol",
"type": "fluid",
"port": {
"multiway_valve_1": "7",
"flask_ethanol": "outlet"
}
}
]
}

View File

@@ -0,0 +1,778 @@
{
"nodes": [
{
"id": "PumpTransferFilterThroughTestStation",
"name": "泵转移+过滤介质测试站",
"children": [
"transfer_pump_1",
"transfer_pump_2",
"multiway_valve_1",
"multiway_valve_2",
"reaction_mixture",
"crude_product",
"filter_celite",
"column_silica_gel",
"filter_C18",
"pure_product",
"collection_bottle_1",
"collection_bottle_2",
"collection_bottle_3",
"intermediate_vessel_1",
"intermediate_vessel_2",
"flask_water",
"flask_ethanol",
"flask_methanol",
"flask_ethyl_acetate",
"flask_acetone",
"flask_hexane",
"flask_air",
"waste_workup"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": [
"PumpTransferProtocol",
"FilterThroughProtocol"
]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "主转移泵",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 200,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 25.0,
"transfer_rate": 2.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "transfer_pump_2",
"name": "副转移泵",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 400,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP2",
"max_volume": 25.0,
"transfer_rate": 2.0
},
"data": {
"position": 0.0,
"status": "Idle"
}
},
{
"id": "multiway_valve_1",
"name": "溶剂分配阀",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 200,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "multiway_valve_2",
"name": "样品分配阀",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 400,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE2",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "reaction_mixture",
"name": "反应混合物",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "organic_reaction_mixture",
"liquid_volume": 250.0
}
]
}
},
{
"id": "crude_product",
"name": "粗产品",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 200,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "crude_organic_compound",
"liquid_volume": 150.0
}
]
}
},
{
"id": "filter_celite",
"name": "硅藻土过滤器",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 450,
"z": 0
},
"config": {
"max_volume": 300.0,
"filter_type": "celite_pad"
},
"data": {
"liquid": []
}
},
{
"id": "column_silica_gel",
"name": "硅胶柱",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 450,
"z": 0
},
"config": {
"max_volume": 200.0,
"filter_type": "silica_gel_column"
},
"data": {
"liquid": []
}
},
{
"id": "filter_C18",
"name": "C18固相萃取柱",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 450,
"z": 0
},
"config": {
"max_volume": 100.0,
"filter_type": "C18_cartridge"
},
"data": {
"liquid": []
}
},
{
"id": "pure_product",
"name": "纯产品",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 900,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_1",
"name": "收集瓶1",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_2",
"name": "收集瓶2",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_3",
"name": "收集瓶3",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 550,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "intermediate_vessel_1",
"name": "中间容器1",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 300,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "intermediate_vessel_2",
"name": "中间容器2",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 400,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "flask_water",
"name": "蒸馏水瓶",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "water",
"liquid_volume": 900.0
}
]
}
},
{
"id": "flask_ethanol",
"name": "乙醇瓶",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 200,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_methanol",
"name": "甲醇瓶",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 300,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "methanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_ethyl_acetate",
"name": "乙酸乙酯瓶",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 400,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethyl_acetate",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_acetone",
"name": "丙酮瓶",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 500,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "acetone",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_hexane",
"name": "正己烷瓶",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "hexane",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 600,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "waste_workup",
"name": "废液瓶",
"children": [],
"parent": "PumpTransferFilterThroughTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 600,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump1_valve1",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_pump2_valve2",
"source": "transfer_pump_2",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"transfer_pump_2": "transferpump",
"multiway_valve_2": "transferpump"
}
},
{
"id": "link_valve1_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_air": "top"
}
},
{
"id": "link_valve1_water",
"source": "multiway_valve_1",
"target": "flask_water",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_water": "outlet"
}
},
{
"id": "link_valve1_ethanol",
"source": "multiway_valve_1",
"target": "flask_ethanol",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_ethanol": "outlet"
}
},
{
"id": "link_valve1_methanol",
"source": "multiway_valve_1",
"target": "flask_methanol",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_methanol": "outlet"
}
},
{
"id": "link_valve1_ethyl_acetate",
"source": "multiway_valve_1",
"target": "flask_ethyl_acetate",
"type": "fluid",
"port": {
"multiway_valve_1": "5",
"flask_ethyl_acetate": "outlet"
}
},
{
"id": "link_valve1_acetone",
"source": "multiway_valve_1",
"target": "flask_acetone",
"type": "fluid",
"port": {
"multiway_valve_1": "6",
"flask_acetone": "outlet"
}
},
{
"id": "link_valve1_hexane",
"source": "multiway_valve_1",
"target": "flask_hexane",
"type": "fluid",
"port": {
"multiway_valve_1": "7",
"flask_hexane": "outlet"
}
},
{
"id": "link_valve1_valve2",
"source": "multiway_valve_1",
"target": "multiway_valve_2",
"type": "fluid",
"port": {
"multiway_valve_1": "8",
"multiway_valve_2": "1"
}
},
{
"id": "link_valve2_reaction_mixture",
"source": "multiway_valve_2",
"target": "reaction_mixture",
"type": "fluid",
"port": {
"multiway_valve_2": "2",
"reaction_mixture": "inlet"
}
},
{
"id": "link_valve2_crude_product",
"source": "multiway_valve_2",
"target": "crude_product",
"type": "fluid",
"port": {
"multiway_valve_2": "3",
"crude_product": "inlet"
}
},
{
"id": "link_valve2_intermediate1",
"source": "multiway_valve_2",
"target": "intermediate_vessel_1",
"type": "fluid",
"port": {
"multiway_valve_2": "4",
"intermediate_vessel_1": "inlet"
}
},
{
"id": "link_valve2_intermediate2",
"source": "multiway_valve_2",
"target": "intermediate_vessel_2",
"type": "fluid",
"port": {
"multiway_valve_2": "5",
"intermediate_vessel_2": "inlet"
}
},
{
"id": "link_valve2_celite",
"source": "multiway_valve_2",
"target": "filter_celite",
"type": "fluid",
"port": {
"multiway_valve_2": "6",
"filter_celite": "inlet"
}
},
{
"id": "link_valve2_silica_gel",
"source": "multiway_valve_2",
"target": "column_silica_gel",
"type": "fluid",
"port": {
"multiway_valve_2": "7",
"column_silica_gel": "inlet"
}
},
{
"id": "link_valve2_C18",
"source": "multiway_valve_2",
"target": "filter_C18",
"type": "fluid",
"port": {
"multiway_valve_2": "8",
"filter_C18": "inlet"
}
},
{
"id": "link_celite_collection1",
"source": "filter_celite",
"target": "collection_bottle_1",
"type": "fluid",
"port": {
"filter_celite": "outlet",
"collection_bottle_1": "inlet"
}
},
{
"id": "link_silica_gel_collection2",
"source": "column_silica_gel",
"target": "collection_bottle_2",
"type": "fluid",
"port": {
"column_silica_gel": "outlet",
"collection_bottle_2": "inlet"
}
},
{
"id": "link_C18_collection3",
"source": "filter_C18",
"target": "collection_bottle_3",
"type": "fluid",
"port": {
"filter_C18": "outlet",
"collection_bottle_3": "inlet"
}
},
{
"id": "link_collection1_pure_product",
"source": "collection_bottle_1",
"target": "pure_product",
"type": "fluid",
"port": {
"collection_bottle_1": "outlet",
"pure_product": "inlet"
}
},
{
"id": "link_collection2_pure_product",
"source": "collection_bottle_2",
"target": "pure_product",
"type": "fluid",
"port": {
"collection_bottle_2": "outlet",
"pure_product": "inlet"
}
},
{
"id": "link_collection3_pure_product",
"source": "collection_bottle_3",
"target": "pure_product",
"type": "fluid",
"port": {
"collection_bottle_3": "outlet",
"pure_product": "inlet"
}
},
{
"id": "link_waste_connection",
"source": "pure_product",
"target": "waste_workup",
"type": "fluid",
"port": {
"pure_product": "waste_outlet",
"waste_workup": "inlet"
}
}
]
}

View File

@@ -0,0 +1,304 @@
{
"nodes": [
{
"id": "SimpleProtocolStation",
"name": "简单协议工作站",
"children": [
"transfer_pump_1",
"multiway_valve_1",
"flask_DMF",
"flask_ethyl_acetate",
"flask_methanol",
"main_reactor",
"waste_workup",
"collection_bottle_1",
"flask_air"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": ["PumpTransferProtocol"]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "转移泵1",
"children": [],
"parent": "SimpleProtocolStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 500,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL",
"max_volume": 25.0,
"transfer_rate": 5.0
},
"data": {
"position": 0.0,
"status": "Idle",
"valve_position": "0"
}
},
{
"id": "multiway_valve_1",
"name": "八通阀1",
"children": [],
"parent": "SimpleProtocolStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 500,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "flask_DMF",
"name": "DMF试剂瓶",
"children": [],
"parent": "SimpleProtocolStation",
"type": "container",
"class": null,
"position": {
"x": 200,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "DMF",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_ethyl_acetate",
"name": "乙酸乙酯试剂瓶",
"children": [],
"parent": "SimpleProtocolStation",
"type": "container",
"class": null,
"position": {
"x": 300,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "ethyl_acetate",
"liquid_volume": 800.0
}
]
}
},
{
"id": "flask_methanol",
"name": "甲醇试剂瓶",
"children": [],
"parent": "SimpleProtocolStation",
"type": "container",
"class": null,
"position": {
"x": 400,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"liquid_type": "methanol",
"liquid_volume": 800.0
}
]
}
},
{
"id": "main_reactor",
"name": "主反应器",
"children": [],
"parent": "SimpleProtocolStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "waste_workup",
"name": "废液处理瓶",
"children": [],
"parent": "SimpleProtocolStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_bottle_1",
"name": "收集瓶1",
"children": [],
"parent": "SimpleProtocolStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "flask_air",
"name": "空气瓶",
"children": [],
"parent": "SimpleProtocolStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_pump_valve",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_valve_air",
"source": "multiway_valve_1",
"target": "flask_air",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_air": "top"
}
},
{
"id": "link_valve_DMF",
"source": "multiway_valve_1",
"target": "flask_DMF",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_DMF": "outlet"
}
},
{
"id": "link_valve_ethyl_acetate",
"source": "multiway_valve_1",
"target": "flask_ethyl_acetate",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_ethyl_acetate": "outlet"
}
},
{
"id": "link_valve_methanol",
"source": "multiway_valve_1",
"target": "flask_methanol",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_methanol": "outlet"
}
},
{
"id": "link_valve_reactor",
"source": "multiway_valve_1",
"target": "main_reactor",
"type": "fluid",
"port": {
"multiway_valve_1": "5",
"main_reactor": "inlet"
}
},
{
"id": "link_valve_waste",
"source": "multiway_valve_1",
"target": "waste_workup",
"type": "fluid",
"port": {
"multiway_valve_1": "6",
"waste_workup": "inlet"
}
},
{
"id": "link_valve_collection",
"source": "multiway_valve_1",
"target": "collection_bottle_1",
"type": "fluid",
"port": {
"multiway_valve_1": "7",
"collection_bottle_1": "inlet"
}
}
]
}

View File

@@ -0,0 +1,432 @@
{
"nodes": [
{
"id": "RunColumnTestStation",
"name": "柱层析测试工作站",
"children": [
"transfer_pump_1",
"multiway_valve_1",
"column_1",
"flask_sample",
"flask_hexane",
"flask_ethyl_acetate",
"flask_methanol",
"column_vessel",
"collection_flask_1",
"collection_flask_2",
"collection_flask_3",
"waste_flask",
"main_reactor"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": ["RunColumnProtocol", "PumpTransferProtocol"]
},
"data": {}
},
{
"id": "transfer_pump_1",
"name": "转移泵",
"children": [],
"parent": "RunColumnTestStation",
"type": "device",
"class": "virtual_transfer_pump",
"position": {
"x": 300,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL_PUMP1",
"max_volume": 50.0,
"transfer_rate": 10.0
},
"data": {
"status": "Idle",
"position": 0.0
}
},
{
"id": "multiway_valve_1",
"name": "八通阀门",
"children": [],
"parent": "RunColumnTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 300,
"y": 400,
"z": 0
},
"config": {
"port": "VIRTUAL_VALVE1",
"positions": 8
},
"data": {
"current_position": 1
}
},
{
"id": "column_1",
"name": "柱层析设备",
"children": [],
"parent": "RunColumnTestStation",
"type": "device",
"class": "virtual_column",
"position": {
"x": 600,
"y": 350,
"z": 0
},
"config": {
"port": "VIRTUAL_COLUMN1",
"max_flow_rate": 5.0,
"column_length": 30.0,
"column_diameter": 2.5
},
"data": {
"status": "Idle",
"column_state": "Ready"
}
},
{
"id": "flask_sample",
"name": "样品瓶",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 500,
"z": 0
},
"config": {
"max_volume": 500.0
},
"data": {
"liquid": [
{
"name": "crude_mixture",
"volume": 200.0,
"concentration": 70.0
}
]
}
},
{
"id": "flask_hexane",
"name": "正己烷洗脱剂",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 200,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"name": "hexane",
"volume": 1500.0,
"concentration": 99.8
}
]
}
},
{
"id": "flask_ethyl_acetate",
"name": "乙酸乙酯洗脱剂",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 300,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"name": "ethyl_acetate",
"volume": 1500.0,
"concentration": 99.5
}
]
}
},
{
"id": "flask_methanol",
"name": "甲醇洗脱剂",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 400,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"name": "methanol",
"volume": 800.0,
"concentration": 99.9
}
]
}
},
{
"id": "column_vessel",
"name": "柱容器",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 450,
"z": 0
},
"config": {
"max_volume": 300.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_flask_1",
"name": "收集瓶1",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_flask_2",
"name": "收集瓶2",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "collection_flask_3",
"name": "收集瓶3",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 900,
"y": 500,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
},
{
"id": "waste_flask",
"name": "废液瓶",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 1000,
"y": 500,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": []
}
},
{
"id": "main_reactor",
"name": "反应器",
"children": [],
"parent": "RunColumnTestStation",
"type": "container",
"class": null,
"position": {
"x": 600,
"y": 300,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"name": "reaction_mixture",
"volume": 300.0,
"concentration": 85.0
}
]
}
}
],
"links": [
{
"id": "link_pump_valve",
"source": "transfer_pump_1",
"target": "multiway_valve_1",
"type": "fluid",
"port": {
"transfer_pump_1": "transferpump",
"multiway_valve_1": "transferpump"
}
},
{
"id": "link_valve_sample",
"source": "multiway_valve_1",
"target": "flask_sample",
"type": "fluid",
"port": {
"multiway_valve_1": "1",
"flask_sample": "outlet"
}
},
{
"id": "link_valve_hexane",
"source": "multiway_valve_1",
"target": "flask_hexane",
"type": "fluid",
"port": {
"multiway_valve_1": "2",
"flask_hexane": "outlet"
}
},
{
"id": "link_valve_ethyl_acetate",
"source": "multiway_valve_1",
"target": "flask_ethyl_acetate",
"type": "fluid",
"port": {
"multiway_valve_1": "3",
"flask_ethyl_acetate": "outlet"
}
},
{
"id": "link_valve_methanol",
"source": "multiway_valve_1",
"target": "flask_methanol",
"type": "fluid",
"port": {
"multiway_valve_1": "4",
"flask_methanol": "outlet"
}
},
{
"id": "link_valve_column_vessel",
"source": "multiway_valve_1",
"target": "column_vessel",
"type": "fluid",
"port": {
"multiway_valve_1": "5",
"column_vessel": "inlet"
}
},
{
"id": "link_valve_collection1",
"source": "multiway_valve_1",
"target": "collection_flask_1",
"type": "fluid",
"port": {
"multiway_valve_1": "6",
"collection_flask_1": "inlet"
}
},
{
"id": "link_valve_collection2",
"source": "multiway_valve_1",
"target": "collection_flask_2",
"type": "fluid",
"port": {
"multiway_valve_1": "7",
"collection_flask_2": "inlet"
}
},
{
"id": "link_valve_waste",
"source": "multiway_valve_1",
"target": "waste_flask",
"type": "fluid",
"port": {
"multiway_valve_1": "8",
"waste_flask": "inlet"
}
},
{
"id": "link_column_device_vessel",
"source": "column_1",
"target": "column_vessel",
"type": "transport",
"port": {
"column_1": "columnin",
"column_vessel": "column_port"
}
},
{
"id": "link_column_collection3",
"source": "column_1",
"target": "collection_flask_3",
"type": "transport",
"port": {
"column_1": "columnout",
"collection_flask_3": "column_outlet"
}
}
]
}

View File

@@ -0,0 +1,141 @@
{
"nodes": [
{
"id": "SimpleStirHeatChillTestStation",
"name": "搅拌加热测试站",
"children": [
"stirrer_1",
"heatchill_1",
"main_reactor",
"secondary_reactor"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 500,
"y": 200,
"z": 0
},
"config": {
"protocol_type": [
"StirProtocol",
"StartStirProtocol",
"StopStirProtocol",
"HeatChillProtocol",
"HeatChillStartProtocol",
"HeatChillStopProtocol"
]
},
"data": {}
},
{
"id": "stirrer_1",
"name": "主搅拌器",
"children": [],
"parent": "SimpleStirHeatChillTestStation",
"type": "device",
"class": "virtual_stirrer",
"position": {
"x": 400,
"y": 350,
"z": 0
},
"config": {
"port": "VIRTUAL_STIRRER1",
"max_speed": 1500.0,
"min_speed": 50.0
},
"data": {
"status": "Idle"
}
},
{
"id": "heatchill_1",
"name": "主加热冷却器",
"children": [],
"parent": "SimpleStirHeatChillTestStation",
"type": "device",
"class": "virtual_heatchill",
"position": {
"x": 600,
"y": 350,
"z": 0
},
"config": {
"port": "VIRTUAL_HEATCHILL1",
"max_temp": 200.0,
"min_temp": -80.0,
"max_stir_speed": 1000.0
},
"data": {
"status": "Idle"
}
},
{
"id": "main_reactor",
"name": "主反应器",
"children": [],
"parent": "SimpleStirHeatChillTestStation",
"type": "container",
"class": null,
"position": {
"x": 500,
"y": 450,
"z": 0
},
"config": {
"max_volume": 2000.0
},
"data": {
"liquid": [
{
"liquid_type": "water",
"liquid_volume": 500.0
}
]
}
},
{
"id": "secondary_reactor",
"name": "副反应器",
"children": [],
"parent": "SimpleStirHeatChillTestStation",
"type": "container",
"class": null,
"position": {
"x": 700,
"y": 450,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": []
}
}
],
"links": [
{
"id": "link_stirrer1_main_reactor",
"source": "stirrer_1",
"target": "main_reactor",
"type": "mechanical",
"port": {
"stirrer_1": "stirrer",
"main_reactor": "stirrer_port"
}
},
{
"id": "link_heatchill1_main_reactor",
"source": "heatchill_1",
"target": "main_reactor",
"type": "mechanical",
"port": {
"heatchill_1": "heatchill",
"main_reactor": "heating_jacket"
}
}
]
}

View File

@@ -0,0 +1,45 @@
{
"nodes": [
{
"id": "Camera",
"name": "摄像头",
"children": [
],
"parent": null,
"type": "device",
"class": "camera",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"camera_index": 0,
"period": 0.05
},
"data": {
}
},
{
"id": "Gripper1",
"name": "假夹爪",
"children": [
],
"parent": null,
"type": "device",
"class": "gripper.mock",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
},
"data": {
}
}
],
"links": [
]
}

View File

@@ -0,0 +1,258 @@
1. 用到的仪器
virtual_multiway_valve(√) 八通阀门
virtual_transfer_pump(√) 转移泵
virtual_centrifuge() 离心机
virtual_rotavap() 旋蒸仪
virtual_heatchill() 加热器
virtual_stirrer() 搅拌器
virtual_solenoid_valve() 电磁阀
virtual_vacuum_pump(√) vacuum_pump.mock 真空泵
virtual_gas_source(√) 气源
virtual_filter() 过滤器
virtual_column(√) 层析柱
separator() homemade_grbl_conductivity 分液漏斗
2. 用到的protocol
PumpTransferProtocol: generate_pump_protocol_with_rinsing, (√)
这个重复了删掉CleanProtocol: generate_clean_protocol,
SeparateProtocol: generate_separate_protocol, (×)
EvaporateProtocol: generate_evaporate_protocol, (√)
EvacuateAndRefillProtocol: generate_evacuateandrefill_protocol, (√)
CentrifugeProtocol: generate_centrifuge_protocol, (√)
AddProtocol: generate_add_protocol, (√)
FilterProtocol: generate_filter_protocol, (√)
HeatChillProtocol: generate_heat_chill_protocol, (√)
HeatChillStartProtocol: generate_heat_chill_start_protocol, (√)
HeatChillStopProtocol: generate_heat_chill_stop_protocol, (√)
HeatChillToTempProtocol:
StirProtocol: generate_stir_protocol, (√)
StartStirProtocol: generate_start_stir_protocol, (√)
StopStirProtocol: generate_stop_stir_protocol, (√)
这个重复了删掉TransferProtocol: generate_transfer_protocol,
CleanVesselProtocol: generate_clean_vessel_protocol, (√)
DissolveProtocol: generate_dissolve_protocol, (√)
FilterThroughProtocol: generate_filter_through_protocol, (√)
RunColumnProtocol: generate_run_column_protocol, (√)<RunColumn Rf="?" column="column" from_vessel="rotavap" ratio="5:95" solvent1="methanol" solvent2="chloroform" to_vessel="rotavap"/>
上下文体积搜索
3. 还没创建的protocol
ResetHandling 写完了 <ResetHandling solvent="methanol"/>
Dry 写完了 <Dry compound="product" vessel="filter"/>
AdjustPH 写完了 <AdjustPH pH="8.0" reagent="hydrochloric acid" vessel="main_reactor"/>
Recrystallize 写完了 <Recrystallize ratio="?" solvent1="dichloromethane" solvent2="methanol" vessel="filter" volume="?"/>
TakeSample <TakeSample id="a" vessel="rotavap"/>
Hydrogenate <Hydrogenate temp="45 °C" time="?" vessel="main_reactor"/>
4. 参数对齐
class PumpTransferProtocol(BaseModel):
from_vessel: str
to_vessel: str
volume: float
amount: str = ""
time: float = 0
viscous: bool = False
rinsing_solvent: str = "air" <Transfer from_vessel="main_reactor" to_vessel="rotavap"/>
rinsing_volume: float = 5000 <Transfer event="A" from_vessel="reactor" rate_spec="dropwise" to_vessel="main_reactor"/>
rinsing_repeats: int = 2 <Transfer from_vessel="separator" through="cartridge" to_vessel="rotavap"/>
solid: bool = False 测完了三个都能跑✅
flowrate: float = 500
transfer_flowrate: float = 2500
class SeparateProtocol(BaseModel):
purpose: str
product_phase: str
from_vessel: str
separation_vessel: str
to_vessel: str
waste_phase_to_vessel: str
solvent: str
solvent_volume: float <Separate product_phase="bottom" purpose="wash" solvent="water" vessel="separator" volume="?"/>
through: str <Separate product_phase="top" purpose="separate" vessel="separator"/>
repeats: int <Separate product_phase="bottom" purpose="extract" repeats="3" solvent="CH2Cl2" vessel="separator" volume="?"/>
stir_time: float <Separate product_phase="top" product_vessel="flask" purpose="separate" vessel="separator" waste_vessel="separator"/>
stir_speed: float
settling_time: float 测完了能跑✅
class EvaporateProtocol(BaseModel):
vessel: str
pressure: float
temp: float <Evaporate solvent="ethanol" vessel="rotavap"/>
time: float 测完了能跑✅
stir_speed: float
class EvacuateAndRefillProtocol(BaseModel):
vessel: str
gas: str <EvacuateAndRefill gas="nitrogen" vessel="main_reactor"/>
repeats: int 测完了能跑✅
class AddProtocol(BaseModel):
vessel: str
reagent: str
volume: float
mass: float
amount: str
time: float
stir: bool
stir_speed: float <Add reagent="ethanol" vessel="main_reactor" volume="2.7 mL"/>
<Add event="A" mass="19.3 g" mol="0.28 mol" rate_spec="portionwise" reagent="sodium nitrite" time="1 h" vessel="main_reactor"/>
<Add mass="4.5 g" mol="16.2 mmol" reagent="(S)-2-phthalimido-6-hydroxyhexanoic acid" vessel="main_reactor"/>
<Add purpose="dilute" reagent="hydrochloric acid" vessel="main_reactor" volume="?"/>
<Add equiv="1.1" event="B" mol="25.2 mmol" rate_spec="dropwise" reagent="1-fluoro-2-nitrobenzene" time="20 min"
vessel="main_reactor" volume="2.67 mL"/>
<Add ratio="?" reagent="tetrahydrofuran|tert-butanol" vessel="main_reactor" volume="?"/>
viscous: bool
purpose: str 测完了能跑✅
class CentrifugeProtocol(BaseModel):
vessel: str
speed: float
time: float 没毛病
temp: float
class FilterProtocol(BaseModel):
vessel: str
filtrate_vessel: str
stir: bool <Filter vessel="filter"/>
stir_speed: float <Filter filtrate_vessel="rotavap" vessel="filter"/>
temp: float 测完了能跑✅
continue_heatchill: bool
volume: float
class HeatChillProtocol(BaseModel):
vessel: str
temp: float
time: float <HeatChill pressure="1 mbar" temp_spec="room temperature" time="?" vessel="main_reactor"/>
<HeatChill temp_spec="room temperature" time_spec="overnight" vessel="main_reactor"/>
<HeatChill temp="256 °C" time="?" vessel="main_reactor"/>
<HeatChill reflux_solvent="methanol" temp_spec="reflux" time="2 h" vessel="main_reactor"/>
<HeatChillToTemp temp_spec="room temperature" vessel="main_reactor"/>
stir: bool 测完了能跑✅
stir_speed: float
purpose: str
class HeatChillStartProtocol(BaseModel):
vessel: str
temp: float 疑似没有
purpose: str
class HeatChillStopProtocol(BaseModel):
vessel: str 疑似没有
class StirProtocol(BaseModel):
stir_time: float
stir_speed: float <Stir time="0.5 h" vessel="main_reactor"/>
<Stir event="A" time="30 min" vessel="main_reactor"/>
<Stir time_spec="several minutes" vessel="filter"/>
settling_time: float 测完了能跑✅
class StartStirProtocol(BaseModel):
vessel: str
stir_speed: float 疑似没有
purpose: str
class StopStirProtocol(BaseModel):
vessel: str 疑似没有
class TransferProtocol(BaseModel):
from_vessel: str
to_vessel: str
volume: float
amount: str = ""
time: float = 0
viscous: bool = False
rinsing_solvent: str = ""
rinsing_volume: float = 0.0
rinsing_repeats: int = 0
solid: bool = False 这个protocol早该删掉了
class CleanVesselProtocol(BaseModel):
vessel: str
solvent: str
volume: float
temp: float
repeats: int = 1 <CleanVessel vessel="centrifuge"/>
class DissolveProtocol(BaseModel):
vessel: str
solvent: str
volume: float <Dissolve mass="2.9 g" mol="0.12 mol" reagent="magnesium" vessel="main_reactor"/>
amount: str = "" <Dissolve mass="12.9 g" reagent="4-tert-butylbenzyl bromide" vessel="main_reactor"/>
temp: float = 25.0 <Dissolve solvent="diisopropyl ether" vessel="rotavap" volume="?"/>
time: float = 0.0 <Dissolve event="A" mass="?" reagent="pyridinone" vessel="main_reactor"/>
stir_speed: float = 0.0 测完了能跑✅
class FilterThroughProtocol(BaseModel):
from_vessel: str
to_vessel: str
filter_through: str
eluting_solvent: str = ""
eluting_volume: float = 0.0 疑似没有
eluting_repeats: int = 0
residence_time: float = 0.0
class RunColumnProtocol(BaseModel):
from_vessel: str
to_vessel: str <RunColumn Rf="?" column="column" from_vessel="rotavap" pct1="40 %" pct2="50 %" solvent1="ethyl acetate" solvent2="hexane" to_vessel="rotavap"/>
column: str 测完了能跑✅
class WashSolidProtocol(BaseModel):
vessel: str
solvent: str
volume: float
filtrate_vessel: str = "" <WashSolid repeats="4" solvent="water" vessel="main_reactor" volume="400 mL"/>
temp: float = 25.0 <WashSolid filtrate_vessel="rotavap" solvent="formic acid" vessel="main_reactor" volume="?"/>
stir: bool = False <WashSolid solvent="acetone" vessel="rotavap" volume="5 mL"/>
<WashSolid solvent="ethyl alcohol" vessel="main_reactor" volume_spec="small volume"/>
<WashSolid filtrate_vessel="rotavap" mass="10 g" solvent="toluene" vessel="separator"/>
<WashSolid repeats_spec="several" solvent="water" vessel="main_reactor" volume="?"/>
stir_speed: float = 0.0 测完了能跑✅
time: float = 0.0
repeats: int = 1
class AdjustPHProtocol(BaseModel):
vessel: str = Field(..., description="目标容器")
ph_value: float = Field(..., description="目标pH值") # 改为 ph_value
reagent: str = Field(..., description="酸碱试剂名称")
# 移除其他可选参数,使用默认值 <新写的没问题>
class ResetHandlingProtocol(BaseModel):
solvent: str = Field(..., description="溶剂名称") <新写的没问题>
class DryProtocol(BaseModel):
compound: str = Field(..., description="化合物名称") <新写的没问题>
vessel: str = Field(..., description="目标容器")
class RecrystallizeProtocol(BaseModel):
ratio: str = Field(..., description="溶剂比例(如 '1:1', '3:7'")
solvent1: str = Field(..., description="第一种溶剂名称") <新写的没问题>
solvent2: str = Field(..., description="第二种溶剂名称")
vessel: str = Field(..., description="目标容器")
volume: float = Field(..., description="总体积 (mL)")
class HydrogenateProtocol(BaseModel):
temp: str = Field(..., description="反应温度(如 '45 °C'")
time: str = Field(..., description="反应时间(如 '2 h'") <新写的没问题>
vessel: str = Field(..., description="反应容器")
还差
<dissolve>
<separate>
<CleanVessel vessel="centrifuge"/>
单位修复:
evaporate
heatchill
recrysitallize
stir
wash solid

File diff suppressed because it is too large Load Diff

View File

@@ -3,7 +3,9 @@
{
"id": "MockChiller1",
"name": "模拟冷却器",
"children": [],
"children": [
"MockContainerForChiller1"
],
"parent": null,
"type": "device",
"class": "mock_chiller",
@@ -25,6 +27,22 @@
"purpose": ""
}
},
{
"id": "MockContainerForChiller1",
"name": "模拟容器",
"type": "container",
"parent": "MockChiller1",
"position": {
"x": 5,
"y": 0,
"z": 0
},
"data": {
"liquid_type": "CuCl2",
"liquid_volume": "100"
},
"children": []
},
{
"id": "MockFilter1",
"name": "模拟过滤器",

View File

@@ -4,58 +4,83 @@
"id": "AddTestStation",
"name": "添加试剂测试工作站",
"children": [
"pump_add",
"flask_1",
"flask_2",
"flask_3",
"flask_4",
"reactor",
"transfer_pump",
"multiway_valve",
"stirrer",
"flask_air"
"flask_reagent1",
"flask_reagent2",
"flask_reagent3",
"flask_reagent4",
"reactor",
"flask_waste",
"flask_rinsing",
"flask_buffer"
],
"parent": null,
"type": "device",
"class": "workstation",
"position": {
"x": 620.6111111111111,
"x": 620,
"y": 171,
"z": 0
},
"config": {
"protocol_type": ["AddProtocol", "PumpTransferProtocol", "CleanProtocol"]
"protocol_type": ["AddProtocol", "TransferProtocol", "StartStirProtocol", "StopStirProtocol"]
},
"data": {}
},
{
"id": "pump_add",
"name": "pump_add",
"id": "transfer_pump",
"name": "注射器泵",
"children": [],
"parent": "AddTestStation",
"type": "device",
"class": "virtual_pump",
"class": "virtual_transfer_pump",
"position": {
"x": 520.6111111111111,
"x": 520,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL",
"max_volume": 25.0
"max_volume": 50.0,
"transfer_rate": 5.0
},
"data": {
"status": "Idle"
}
},
{
"id": "multiway_valve",
"name": "八通阀门",
"children": [],
"parent": "AddTestStation",
"type": "device",
"class": "virtual_multiway_valve",
"position": {
"x": 420,
"y": 300,
"z": 0
},
"config": {
"port": "VIRTUAL",
"positions": 8
},
"data": {
"status": "Idle",
"current_position": 1
}
},
{
"id": "stirrer",
"name": "stirrer",
"name": "搅拌器",
"children": [],
"parent": "AddTestStation",
"type": "device",
"class": "virtual_stirrer",
"position": {
"x": 698.1111111111111,
"y": 478,
"x": 720,
"y": 450,
"z": 0
},
"config": {
@@ -68,110 +93,115 @@
}
},
{
"id": "flask_1",
"name": "通用试剂瓶1",
"id": "flask_reagent1",
"name": "试剂瓶1 (甲醇)",
"children": [],
"parent": "AddTestStation",
"type": "container",
"class": null,
"position": {
"x": 100,
"y": 428,
"y": 400,
"z": 0
},
"config": {
"max_volume": 2000.0
"max_volume": 1000.0
},
"data": {
"liquid": []
"liquid": [
{
"name": "甲醇",
"volume": 800.0,
"concentration": "99.9%"
}
]
}
},
{
"id": "flask_2",
"name": "通用试剂瓶2",
"id": "flask_reagent2",
"name": "试剂瓶2 (乙醇)",
"children": [],
"parent": "AddTestStation",
"type": "container",
"class": null,
"position": {
"x": 250,
"y": 428,
"x": 180,
"y": 400,
"z": 0
},
"config": {
"max_volume": 2000.0
"max_volume": 1000.0
},
"data": {
"liquid": []
"liquid": [
{
"name": "乙醇",
"volume": 750.0,
"concentration": "95%"
}
]
}
},
{
"id": "flask_3",
"name": "通用试剂瓶3",
"id": "flask_reagent3",
"name": "试剂瓶3 (丙酮)",
"children": [],
"parent": "AddTestStation",
"type": "container",
"class": null,
"position": {
"x": 400,
"y": 428,
"x": 260,
"y": 400,
"z": 0
},
"config": {
"max_volume": 2000.0
"max_volume": 1000.0
},
"data": {
"liquid": []
"liquid": [
{
"name": "丙酮",
"volume": 900.0,
"concentration": "99.5%"
}
]
}
},
{
"id": "flask_4",
"name": "通用试剂瓶4",
"id": "flask_reagent4",
"name": "试剂瓶4 (二氯甲烷)",
"children": [],
"parent": "AddTestStation",
"type": "container",
"class": null,
"position": {
"x": 550,
"y": 428,
"x": 340,
"y": 400,
"z": 0
},
"config": {
"max_volume": 2000.0
"max_volume": 1000.0
},
"data": {
"liquid": []
"liquid": [
{
"name": "二氯甲烷",
"volume": 850.0,
"concentration": "99.8%"
}
]
}
},
{
"id": "reactor",
"name": "reactor",
"name": "反应器",
"children": [],
"parent": "AddTestStation",
"type": "container",
"class": null,
"position": {
"x": 698.1111111111111,
"y": 428,
"z": 0
},
"config": {
"max_volume": 5000.0
},
"data": {
"liquid": []
}
},
{
"id": "flask_air",
"name": "flask_air",
"children": [],
"parent": "AddTestStation",
"type": "container",
"class": null,
"position": {
"x": 800,
"y": 300,
"x": 720,
"y": 400,
"z": 0
},
"config": {
@@ -180,70 +210,166 @@
"data": {
"liquid": []
}
},
{
"id": "flask_waste",
"name": "废液瓶",
"children": [],
"parent": "AddTestStation",
"type": "container",
"class": null,
"position": {
"x": 850,
"y": 400,
"z": 0
},
"config": {
"max_volume": 3000.0
},
"data": {
"liquid": []
}
},
{
"id": "flask_rinsing",
"name": "冲洗液瓶",
"children": [],
"parent": "AddTestStation",
"type": "container",
"class": null,
"position": {
"x": 950,
"y": 300,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"name": "去离子水",
"volume": 800.0,
"concentration": "纯净"
}
]
}
},
{
"id": "flask_buffer",
"name": "缓冲液瓶",
"children": [],
"parent": "AddTestStation",
"type": "container",
"class": null,
"position": {
"x": 950,
"y": 400,
"z": 0
},
"config": {
"max_volume": 1000.0
},
"data": {
"liquid": [
{
"name": "磷酸盐缓冲液",
"volume": 700.0,
"concentration": "0.1M, pH 7.4"
}
]
}
}
],
"links": [
{
"source": "stirrer",
"source": "transfer_pump",
"target": "multiway_valve",
"type": "physical",
"port": {
"transfer_pump": "syringe-port",
"multiway_valve": "multiway-valve-inlet"
}
},
{
"source": "multiway_valve",
"target": "flask_reagent1",
"type": "physical",
"port": {
"multiway_valve": "multiway-valve-port-1",
"flask_reagent1": "top"
}
},
{
"source": "multiway_valve",
"target": "flask_reagent2",
"type": "physical",
"port": {
"multiway_valve": "multiway-valve-port-2",
"flask_reagent2": "top"
}
},
{
"source": "multiway_valve",
"target": "flask_reagent3",
"type": "physical",
"port": {
"multiway_valve": "multiway-valve-port-3",
"flask_reagent3": "top"
}
},
{
"source": "multiway_valve",
"target": "flask_reagent4",
"type": "physical",
"port": {
"multiway_valve": "multiway-valve-port-4",
"flask_reagent4": "top"
}
},
{
"source": "multiway_valve",
"target": "reactor",
"type": "physical",
"port": {
"stirrer": "top",
"reactor": "bottom"
}
},
{
"source": "pump_add",
"target": "flask_1",
"type": "physical",
"port": {
"pump_add": "outlet",
"flask_1": "top"
}
},
{
"source": "pump_add",
"target": "flask_2",
"type": "physical",
"port": {
"pump_add": "inlet",
"flask_2": "top"
}
},
{
"source": "pump_add",
"target": "flask_3",
"type": "physical",
"port": {
"pump_add": "inlet",
"flask_3": "top"
}
},
{
"source": "pump_add",
"target": "flask_4",
"type": "physical",
"port": {
"pump_add": "inlet",
"flask_4": "top"
}
},
{
"source": "pump_add",
"target": "reactor",
"type": "physical",
"port": {
"pump_add": "outlet",
"multiway_valve": "multiway-valve-port-5",
"reactor": "top"
}
},
{
"source": "pump_add",
"target": "flask_air",
"source": "multiway_valve",
"target": "flask_waste",
"type": "physical",
"port": {
"pump_add": "inlet",
"flask_air": "top"
"multiway_valve": "multiway-valve-port-6",
"flask_waste": "top"
}
},
{
"source": "multiway_valve",
"target": "flask_rinsing",
"type": "physical",
"port": {
"multiway_valve": "multiway-valve-port-7",
"flask_rinsing": "top"
}
},
{
"source": "multiway_valve",
"target": "flask_buffer",
"type": "physical",
"port": {
"multiway_valve": "multiway-valve-port-8",
"flask_buffer": "top"
}
},
{
"source": "stirrer",
"target": "reactor",
"type": "physical",
"port": {
"stirrer": "stirrer-vessel",
"reactor": "bottom"
}
}
]

View File

@@ -30,14 +30,17 @@
"children": [],
"parent": "ReactorX",
"type": "container",
"class": null,
"class": "container",
"position": {
"x": 698.1111111111111,
"y": 428,
"z": 0
},
"config": {
"max_volume": 5000.0
"max_volume": 5000.0,
"size_x": 200.0,
"size_y": 200.0,
"size_z": 200.0
},
"data": {
"liquid": [
@@ -71,7 +74,7 @@
"type": "device",
"class": "solenoid_valve.mock",
"position": {
"x": 620.6111111111111,
"x": 780,
"y": 171,
"z": 0
},
@@ -89,7 +92,7 @@
"type": "device",
"class": "vacuum_pump.mock",
"position": {
"x": 620.6111111111111,
"x": 500,
"y": 171,
"z": 0
},
@@ -107,7 +110,7 @@
"type": "device",
"class": "gas_source.mock",
"position": {
"x": 620.6111111111111,
"x": 900,
"y": 171,
"z": 0
},
@@ -119,39 +122,39 @@
],
"links": [
{
"source": "reactor",
"target": "vacuum_valve",
"type": "physical",
"source": "vacuum_valve",
"target": "reactor",
"type": "fluid",
"port": {
"reactor": "top",
"vacuum_valve": "1"
"vacuum_valve": "out"
}
},
{
"source": "reactor",
"target": "gas_valve",
"type": "physical",
"source": "gas_valve",
"target": "reactor",
"type": "fluid",
"port": {
"reactor": "top",
"gas_valve": "1"
"gas_valve": "out"
}
},
{
"source": "vacuum_pump",
"target": "vacuum_valve",
"type": "physical",
"type": "fluid",
"port": {
"vacuum_pump": "out",
"vacuum_valve": "0"
"vacuum_valve": "in"
}
},
{
"source": "gas_source",
"target": "gas_valve",
"type": "physical",
"type": "fluid",
"port": {
"gas_source": "out",
"gas_valve": "0"
"gas_valve": "in"
}
}
]

217
test/experiments/prcxi.json Normal file
View File

@@ -0,0 +1,217 @@
{
"nodes": [
{
"id": "PRCXI",
"name": "PRCXI",
"parent": null,
"type": "device",
"class": "liquid_handler.prcxi",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"deck": {
"_resource_child_name": "deck",
"_resource_type": "unilabos.devices.liquid_handling.prcxi.prcxi:PRCXI9300Deck"
},
"host": "192.168.3.9",
"port": 9999,
"timeout": 10.0,
"setup": false,
"debug": true
},
"data": {},
"children": [
"deck"
]
},
{
"id": "deck",
"name": "deck",
"sample_id": null,
"children": [
"rackT1",
"plateT2",
"plateT3",
"rackT4",
"plateT5",
"plateT6"
],
"parent": "PRCXI",
"type": "device",
"class": "",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"type": "PRCXI9300Deck"
},
"data": {}
},
{
"id": "rackT1",
"name": "rackT1",
"sample_id": null,
"children": [],
"parent": "deck",
"type": "device",
"class": "",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"type": "PRCXI9300Container",
"size_x": 120.98,
"size_y": 82.12,
"size_z": 50.3
},
"data": {
"Material": {
"uuid": "80652665f6a54402b2408d50b40398df",
"Code": "ZX-001-1000",
"Name": "1000μL Tip头",
"SummaryName": "1000μL Tip头",
"PipetteHeight": 100,
"materialEnum": 1
}
}
},
{
"id": "plateT2",
"name": "plateT2",
"sample_id": null,
"children": [],
"parent": "deck",
"type": "device",
"class": "",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"type": "PRCXI9300Container",
"size_x": 120.98,
"size_y": 82.12,
"size_z": 50.3
},
"data": {
"Material": {
"uuid": "57b1e4711e9e4a32b529f3132fc5931f"
}
}
},
{
"id": "plateT3",
"name": "plateT3",
"sample_id": null,
"children": [],
"parent": "deck",
"type": "device",
"class": "",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"type": "PRCXI9300Container",
"size_x": 120.98,
"size_y": 82.12,
"size_z": 50.3
},
"data": {
"Material": {
"uuid": "57b1e4711e9e4a32b529f3132fc5931f"
}
}
},
{
"id": "rackT4",
"name": "rackT4",
"sample_id": null,
"children": [],
"parent": "deck",
"type": "device",
"class": "",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"type": "PRCXI9300Container",
"size_x": 120.98,
"size_y": 82.12,
"size_z": 50.3
},
"data": {
"Material": {
"uuid": "80652665f6a54402b2408d50b40398df",
"Code": "ZX-001-1000",
"Name": "1000μL Tip头",
"SummaryName": "1000μL Tip头",
"PipetteHeight": 100,
"materialEnum": 1
}
}
},
{
"id": "plateT5",
"name": "plateT5",
"sample_id": null,
"children": [],
"parent": "deck",
"type": "device",
"class": "",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"type": "PRCXI9300Container",
"size_x": 120.98,
"size_y": 82.12,
"size_z": 50.3
},
"data": {
"Material": {
"uuid": "57b1e4711e9e4a32b529f3132fc5931f"
}
}
},
{
"id": "plateT6",
"name": "plateT6",
"sample_id": null,
"children": [],
"parent": "deck",
"type": "device",
"class": "",
"position": {
"x": 0,
"y": 0,
"z": 0
},
"config": {
"type": "PRCXI9300Container",
"size_x": 120.98,
"size_y": 82.12,
"size_z": 50.3
},
"data": {
"Material": {
"uuid": "57b1e4711e9e4a32b529f3132fc5931f"
}
}
}
],
"links": []
}

View File

@@ -48,8 +48,9 @@ dependencies:
- ros-humble-ros2-control
- ros-humble-robot-state-publisher
- ros-humble-joint-state-publisher
# web
# web and visualization
- ros-humble-rosbridge-server
- ros-humble-cv-bridge
# geometry & motion planning
- ros-humble-tf2
- ros-humble-moveit

View File

@@ -50,8 +50,9 @@ dependencies:
- ros-humble-ros2-control
- ros-humble-robot-state-publisher
- ros-humble-joint-state-publisher
# web
# web and visualization
- ros-humble-rosbridge-server
- ros-humble-cv-bridge
# geometry & motion planning
- ros-humble-tf2
- ros-humble-moveit

View File

@@ -6,12 +6,12 @@ channels:
dependencies:
# Basics
- python=3.11.11
- compilers
- cmake
- make
- ninja
- sphinx
- sphinx_rtd_theme
# - compilers
# - cmake
# - make
# - ninja
# - sphinx
# - sphinx_rtd_theme
# Data Visualization
- numpy
- scipy
@@ -23,7 +23,7 @@ dependencies:
- pyserial
- pyusb
- pylibftdi
- pymodbus
- pymodbus==3.6.9
- python-can
- pyvisa
- opencv
@@ -48,8 +48,9 @@ dependencies:
- ros-humble-ros2-control
- ros-humble-robot-state-publisher
- ros-humble-joint-state-publisher
# web
# web and visualization
- ros-humble-rosbridge-server
- ros-humble-cv-bridge
# geometry & motion planning
- ros-humble-tf2
- ros-humble-moveit
@@ -61,5 +62,12 @@ dependencies:
# ros-humble-gazebo-ros // ignored because of the conflict with ign-gazebo
# ilab equipments
# ros-humble-unilabos-msgs
# driver
#- crcmod
- pip:
- paho-mqtt
- paho-mqtt
# driver
#- ur-rtde # set PYTHONUTF8=1
#- pyautogui
#- pywinauto
#- pywinauto_recorder

View File

@@ -8,6 +8,7 @@ def start_backend(
backend: str,
devices_config: dict = {},
resources_config: list = [],
resources_edge_config: list = [],
graph=None,
controllers_config: dict = {},
bridges=[],
@@ -31,7 +32,7 @@ def start_backend(
backend_thread = threading.Thread(
target=main if not without_host else slave,
args=(devices_config, resources_config, graph, controllers_config, bridges, visual, resources_mesh_config),
args=(devices_config, resources_config, resources_edge_config, graph, controllers_config, bridges, visual, resources_mesh_config),
name="backend_thread",
daemon=True,
)

View File

@@ -1,8 +1,10 @@
import json
import traceback
import uuid
from unilabos.app.model import JobAddReq, JobData
from unilabos.ros.nodes.presets.host_node import HostNode
from unilabos.utils.type_check import serialize_result_info
def get_resources() -> tuple:
@@ -25,12 +27,18 @@ def job_add(req: JobAddReq) -> JobData:
if req.job_id is None:
req.job_id = str(uuid.uuid4())
action_name = req.data["action"]
action_kwargs = req.data["action_kwargs"]
req.data['action'] = action_name
if action_name == "execute_command_from_outer":
action_kwargs = {"command": json.dumps(action_kwargs)}
elif "command" in action_kwargs:
action_kwargs = action_kwargs["command"]
action_type = req.data.get("action_type", "LocalUnknown")
action_args = req.data.get("action_kwargs", None) # 兼容老版本,后续删除
if action_args is None:
action_args = req.data.get("action_args")
else:
if "command" in action_args:
action_args = action_args["command"]
# print(f"job_add:{req.device_id} {action_name} {action_kwargs}")
HostNode.get_instance().send_goal(req.device_id, action_name=action_name, action_kwargs=action_kwargs, goal_uuid=req.job_id, server_info=req.server_info)
try:
HostNode.get_instance().send_goal(req.device_id, action_type=action_type, action_name=action_name, action_kwargs=action_args, goal_uuid=req.job_id, server_info=req.server_info)
except Exception as e:
for bridge in HostNode.get_instance().bridges:
if hasattr(bridge, "publish_job_status"):
bridge.publish_job_status({}, req.job_id, "failed", serialize_result_info(traceback.format_exc(), False, {}))
return JobData(jobId=req.job_id)

View File

@@ -10,7 +10,7 @@ from copy import deepcopy
import yaml
from unilabos.resources.graphio import tree_to_list
from unilabos.resources.graphio import tree_to_list, modify_to_backend_format
# 首先添加项目根目录到路径
current_dir = os.path.dirname(os.path.abspath(__file__))
@@ -22,6 +22,21 @@ from unilabos.config.config import load_config, BasicConfig, _update_config_from
from unilabos.utils.banner_print import print_status, print_unilab_banner
def load_config_from_file(config_path):
if config_path is None:
config_path = os.environ.get("UNILABOS.BASICCONFIG.CONFIG_PATH", None)
if config_path:
if not os.path.exists(config_path):
print_status(f"配置文件 {config_path} 不存在", "error")
elif not config_path.endswith(".py"):
print_status(f"配置文件 {config_path} 不是Python文件必须以.py结尾", "error")
else:
load_config(config_path)
else:
print_status(f"启动 UniLab-OS时配置文件参数未正确传入 --config '{config_path}' 尝试本地配置...", "warning")
load_config(config_path)
def parse_args():
"""解析命令行参数"""
parser = argparse.ArgumentParser(description="Start Uni-Lab Edge server.")
@@ -58,6 +73,11 @@ def parse_args():
action="store_true",
help="Slave模式下跳过等待host服务",
)
parser.add_argument(
"--upload_registry",
action="store_true",
help="启动unilab时同时报送注册表信息",
)
parser.add_argument(
"--config",
type=str,
@@ -97,22 +117,12 @@ def main():
# 加载配置文件优先加载config然后从env读取
config_path = args_dict.get("config")
if config_path is None:
config_path = os.environ.get("UNILABOS.BASICCONFIG.CONFIG_PATH", None)
if config_path:
if not os.path.exists(config_path):
print_status(f"配置文件 {config_path} 不存在", "error")
elif not config_path.endswith(".py"):
print_status(f"配置文件 {config_path} 不是Python文件必须以.py结尾", "error")
else:
load_config(config_path)
else:
print_status(f"启动 UniLab-OS时配置文件参数未正确传入 --config '{config_path}' 尝试本地配置...", "warning")
load_config(config_path)
load_config_from_file(config_path)
# 设置BasicConfig参数
BasicConfig.is_host_mode = not args_dict.get("without_host", False)
BasicConfig.slave_no_host = args_dict.get("slave_no_host", False)
BasicConfig.upload_registry = args_dict.get("upload_registry", False)
machine_name = os.popen("hostname").read().strip()
machine_name = "".join([c if c.isalnum() or c == "_" else "_" for c in machine_name])
BasicConfig.machine_name = machine_name
@@ -136,15 +146,16 @@ def main():
# 注册表
build_registry(args_dict["registry_path"])
resource_edge_info = []
devices_and_resources = None
if args_dict["graph"] is not None:
import unilabos.resources.graphio as graph_res
graph_res.physical_setup_graph = (
read_node_link_json(args_dict["graph"])
if args_dict["graph"].endswith(".json")
else read_graphml(args_dict["graph"])
)
if args_dict["graph"].endswith(".json"):
graph, data = read_node_link_json(args_dict["graph"])
else:
graph, data = read_graphml(args_dict["graph"])
graph_res.physical_setup_graph = graph
resource_edge_info = modify_to_backend_format(data["links"])
devices_and_resources = dict_from_graph(graph_res.physical_setup_graph)
# args_dict["resources_config"] = initialize_resources(list(deepcopy(devices_and_resources).values()))
args_dict["resources_config"] = list(devices_and_resources.values())
@@ -185,6 +196,7 @@ def main():
signal.signal(signal.SIGTERM, _exit)
mqtt_client.start()
args_dict["resources_mesh_config"] = {}
args_dict["resources_edge_config"] = resource_edge_info
# web visiualize 2D
if args_dict["visual"] != "disable":
enable_rviz = args_dict["visual"] == "rviz"

View File

@@ -56,6 +56,10 @@ class MQTTClient:
payload_json["data"] = {}
if "action" in payload_json:
payload_json["data"]["action"] = payload_json.pop("action")
if "action_type" in payload_json:
payload_json["data"]["action_type"] = payload_json.pop("action_type")
if "action_args" in payload_json:
payload_json["data"]["action_args"] = payload_json.pop("action_args")
if "action_kwargs" in payload_json:
payload_json["data"]["action_kwargs"] = payload_json.pop("action_kwargs")
job_req = JobAddReq.model_validate(payload_json)
@@ -159,7 +163,7 @@ class MQTTClient:
# status = device_status.get(device_id, {})
if self.mqtt_disable:
return
status = {"data": device_status.get(device_id, {}), "device_id": device_id}
status = {"data": device_status.get(device_id, {}), "device_id": device_id, "timestamp": time.time()}
address = f"labs/{MQConfig.lab_id}/devices/"
self.client.publish(address, json.dumps(status), qos=2)
logger.debug(f"Device status published: address: {address}, {status}")
@@ -172,13 +176,14 @@ class MQTTClient:
jobdata = {"job_id": job_id, "data": feedback_data, "status": status, "return_info": return_info}
self.client.publish(f"labs/{MQConfig.lab_id}/job/list/", json.dumps(jobdata), qos=2)
def publish_registry(self, device_id: str, device_info: dict):
def publish_registry(self, device_id: str, device_info: dict, print_debug: bool = True):
if self.mqtt_disable:
return
address = f"labs/{MQConfig.lab_id}/registry/"
registry_data = json.dumps({device_id: device_info}, ensure_ascii=False, cls=TypeEncoder)
self.client.publish(address, registry_data, qos=2)
logger.debug(f"Registry data published: address: {address}, {registry_data}")
if print_debug:
logger.debug(f"Registry data published: address: {address}, {registry_data}")
def publish_actions(self, action_id: str, action_info: dict):
if self.mqtt_disable:

73
unilabos/app/register.py Normal file
View File

@@ -0,0 +1,73 @@
import argparse
import time
from unilabos.registry.registry import build_registry
from unilabos.app.main import load_config_from_file
from unilabos.utils.log import logger
def register_devices_and_resources(mqtt_client, lab_registry):
"""
注册设备和资源到 MQTT
"""
logger.info("[UniLab Register] 开始注册设备和资源...")
# 注册设备信息
for device_info in lab_registry.obtain_registry_device_info():
mqtt_client.publish_registry(device_info["id"], device_info, False)
logger.debug(f"[UniLab Register] 注册设备: {device_info['id']}")
# 注册资源信息
for resource_info in lab_registry.obtain_registry_resource_info():
mqtt_client.publish_registry(resource_info["id"], resource_info, False)
logger.debug(f"[UniLab Register] 注册资源: {resource_info['id']}")
time.sleep(10)
logger.info("[UniLab Register] 设备和资源注册完成.")
def main():
"""
命令行入口函数
"""
parser = argparse.ArgumentParser(description="注册设备和资源到 MQTT")
parser.add_argument(
"--registry",
type=str,
default=None,
action="append",
help="注册表路径",
)
parser.add_argument(
"--config",
type=str,
default=None,
help="配置文件路径,支持.py格式的Python配置文件",
)
parser.add_argument(
"--complete_registry",
action="store_true",
default=False,
help="是否补全注册表",
)
args = parser.parse_args()
# 构建注册表
build_registry(args.registry, args.complete_registry)
load_config_from_file(args.config)
from unilabos.app.mq import mqtt_client
# 连接mqtt
mqtt_client.start()
from unilabos.registry.registry import lab_registry
# 注册设备和资源
register_devices_and_resources(mqtt_client, lab_registry)
if __name__ == "__main__":
main()

View File

@@ -30,7 +30,27 @@ class HTTPClient:
self.auth = MQConfig.lab_id
info(f"HTTPClient 初始化完成: remote_addr={self.remote_addr}")
def resource_add(self, resources: List[Dict[str, Any]], database_process_later:bool) -> requests.Response:
def resource_edge_add(self, resources: List[Dict[str, Any]], database_process_later: bool) -> requests.Response:
"""
添加资源
Args:
resources: 要添加的资源列表
database_process_later: 后台处理资源
Returns:
Response: API响应对象
"""
response = requests.post(
f"{self.remote_addr}/lab/resource/edge/batch_create/?database_process_later={1 if database_process_later else 0}",
json=resources,
headers={"Authorization": f"lab {self.auth}"},
timeout=100,
)
if response.status_code != 200 and response.status_code != 201:
logger.error(f"添加物料关系失败: {response.status_code}, {response.text}")
return response
def resource_add(self, resources: List[Dict[str, Any]], database_process_later: bool) -> requests.Response:
"""
添加资源
@@ -44,8 +64,10 @@ class HTTPClient:
f"{self.remote_addr}/lab/resource/?database_process_later={1 if database_process_later else 0}",
json=resources,
headers={"Authorization": f"lab {self.auth}"},
timeout=5,
timeout=100,
)
if response.status_code != 200:
logger.error(f"添加物料失败: {response.text}")
return response
def resource_get(self, id: str, with_children: bool = False) -> Dict[str, Any]:
@@ -63,7 +85,7 @@ class HTTPClient:
f"{self.remote_addr}/lab/resource/?edge_format=1",
params={"id": id, "with_children": with_children},
headers={"Authorization": f"lab {self.auth}"},
timeout=5,
timeout=20,
)
return response.json()
@@ -81,7 +103,7 @@ class HTTPClient:
f"{self.remote_addr}/lab/resource/batch_delete/",
params={"id": id},
headers={"Authorization": f"lab {self.auth}"},
timeout=5,
timeout=20,
)
return response
@@ -99,7 +121,7 @@ class HTTPClient:
f"{self.remote_addr}/lab/resource/batch_update/?edge_format=1",
json=resources,
headers={"Authorization": f"lab {self.auth}"},
timeout=5,
timeout=100,
)
return response

View File

@@ -7,6 +7,7 @@ Web页面模块
import json
import os
import sys
import traceback
from pathlib import Path
from typing import Dict
@@ -16,9 +17,8 @@ from jinja2 import Environment, FileSystemLoader
from unilabos.config.config import BasicConfig
from unilabos.registry.registry import lab_registry
from unilabos.app.mq import mqtt_client
from unilabos.ros.msgs.message_converter import msg_converter_manager
from unilabos.utils.log import error
from unilabos.utils.log import error, debug
from unilabos.utils.type_check import TypeEncoder
from unilabos.app.web.utils.device_utils import get_registry_info
from unilabos.app.web.utils.host_utils import get_host_node_info
@@ -124,6 +124,7 @@ def setup_web_pages(router: APIRouter) -> None:
return html
except Exception as e:
debug(traceback.format_exc())
error(f"生成状态页面时出错: {str(e)}")
raise HTTPException(status_code=500, detail=f"Error generating status page: {str(e)}")

View File

@@ -65,6 +65,8 @@ def get_yaml_from_goal_type(goal_type) -> str:
Returns:
str: 默认Goal参数的YAML格式字符串
"""
if isinstance(goal_type, str):
return "{}"
if not goal_type:
return "{}"

View File

@@ -8,7 +8,12 @@ from .agv_transfer_protocol import generate_agv_transfer_protocol
from .add_protocol import generate_add_protocol
from .centrifuge_protocol import generate_centrifuge_protocol
from .filter_protocol import generate_filter_protocol
from .heatchill_protocol import generate_heat_chill_protocol, generate_heat_chill_start_protocol, generate_heat_chill_stop_protocol
from .heatchill_protocol import (
generate_heat_chill_protocol,
generate_heat_chill_start_protocol,
generate_heat_chill_stop_protocol,
generate_heat_chill_to_temp_protocol # 保留导入,但不注册为协议
)
from .stir_protocol import generate_stir_protocol, generate_start_stir_protocol, generate_stop_stir_protocol
from .transfer_protocol import generate_transfer_protocol
from .clean_vessel_protocol import generate_clean_vessel_protocol
@@ -16,29 +21,39 @@ from .dissolve_protocol import generate_dissolve_protocol
from .filter_through_protocol import generate_filter_through_protocol
from .run_column_protocol import generate_run_column_protocol
from .wash_solid_protocol import generate_wash_solid_protocol
from .adjustph_protocol import generate_adjust_ph_protocol
from .reset_handling_protocol import generate_reset_handling_protocol
from .dry_protocol import generate_dry_protocol
from .recrystallize_protocol import generate_recrystallize_protocol
from .hydrogenate_protocol import generate_hydrogenate_protocol
# Define a dictionary of protocol generators.
action_protocol_generators = {
PumpTransferProtocol: generate_pump_protocol_with_rinsing,
CleanProtocol: generate_clean_protocol,
SeparateProtocol: generate_separate_protocol,
EvaporateProtocol: generate_evaporate_protocol,
EvacuateAndRefillProtocol: generate_evacuateandrefill_protocol,
AGVTransferProtocol: generate_agv_transfer_protocol,
CentrifugeProtocol: generate_centrifuge_protocol,
AddProtocol: generate_add_protocol,
AGVTransferProtocol: generate_agv_transfer_protocol,
AdjustPHProtocol: generate_adjust_ph_protocol,
CentrifugeProtocol: generate_centrifuge_protocol,
CleanProtocol: generate_clean_protocol,
CleanVesselProtocol: generate_clean_vessel_protocol,
DissolveProtocol: generate_dissolve_protocol,
DryProtocol: generate_dry_protocol,
EvacuateAndRefillProtocol: generate_evacuateandrefill_protocol,
EvaporateProtocol: generate_evaporate_protocol,
FilterProtocol: generate_filter_protocol,
FilterThroughProtocol: generate_filter_through_protocol,
HeatChillProtocol: generate_heat_chill_protocol,
HeatChillStartProtocol: generate_heat_chill_start_protocol,
HeatChillStopProtocol: generate_heat_chill_stop_protocol,
StirProtocol: generate_stir_protocol,
HydrogenateProtocol: generate_hydrogenate_protocol,
PumpTransferProtocol: generate_pump_protocol_with_rinsing,
RecrystallizeProtocol: generate_recrystallize_protocol,
ResetHandlingProtocol: generate_reset_handling_protocol,
RunColumnProtocol: generate_run_column_protocol,
SeparateProtocol: generate_separate_protocol,
StartStirProtocol: generate_start_stir_protocol,
StirProtocol: generate_stir_protocol,
StopStirProtocol: generate_stop_stir_protocol,
TransferProtocol: generate_transfer_protocol,
CleanVesselProtocol: generate_clean_vessel_protocol,
DissolveProtocol: generate_dissolve_protocol,
FilterThroughProtocol: generate_filter_through_protocol,
RunColumnProtocol: generate_run_column_protocol,
WashSolidProtocol: generate_wash_solid_protocol,
}
}

View File

@@ -1,74 +1,702 @@
import networkx as nx
from typing import List, Dict, Any
def generate_add_protocol(
G: nx.DiGraph,
vessel: str,
reagent: str,
volume: float,
mass: float,
amount: str,
time: float,
stir: bool,
stir_speed: float,
viscous: bool,
purpose: str
) -> List[Dict[str, Any]]:
"""
生成添加试剂的协议序列 - 严格按照 Add.action
"""
action_sequence = []
# 如果指定了体积,执行液体转移
if volume > 0:
# 查找可用的试剂瓶
available_flasks = [node for node in G.nodes()
if node.startswith('flask_')
and G.nodes[node].get('type') == 'container']
import networkx as nx
import re
import logging
from typing import List, Dict, Any, Union
from .pump_protocol import generate_pump_protocol_with_rinsing
logger = logging.getLogger(__name__)
def debug_print(message):
"""调试输出"""
print(f"[ADD] {message}", flush=True)
logger.info(f"[ADD] {message}")
def parse_volume_input(volume_input: Union[str, float]) -> float:
"""
解析体积输入,支持带单位的字符串
Args:
volume_input: 体积输入(如 "2.7 mL", "2.67 mL", "?", 10.0
Returns:
float: 体积(毫升)
"""
if isinstance(volume_input, (int, float)):
debug_print(f"📏 体积输入为数值: {volume_input}")
return float(volume_input)
if not volume_input or not str(volume_input).strip():
debug_print(f"⚠️ 体积输入为空返回0.0mL")
return 0.0
volume_str = str(volume_input).lower().strip()
debug_print(f"🔍 解析体积输入: '{volume_str}'")
# 处理未知体积
if volume_str in ['?', 'unknown', 'tbd', 'to be determined']:
default_volume = 10.0 # 默认10mL
debug_print(f"❓ 检测到未知体积,使用默认值: {default_volume}mL 🎯")
return default_volume
# 移除空格并提取数字和单位
volume_clean = re.sub(r'\s+', '', volume_str)
# 匹配数字和单位的正则表达式
match = re.match(r'([0-9]*\.?[0-9]+)\s*(ml|l|μl|ul|microliter|milliliter|liter)?', volume_clean)
if not match:
debug_print(f"❌ 无法解析体积: '{volume_str}'使用默认值10mL")
return 10.0
value = float(match.group(1))
unit = match.group(2) or 'ml' # 默认单位为毫升
# 转换为毫升
if unit in ['l', 'liter']:
volume = value * 1000.0 # L -> mL
debug_print(f"🔄 体积转换: {value}L → {volume}mL")
elif unit in ['μl', 'ul', 'microliter']:
volume = value / 1000.0 # μL -> mL
debug_print(f"🔄 体积转换: {value}μL → {volume}mL")
else: # ml, milliliter 或默认
volume = value # 已经是mL
debug_print(f"✅ 体积已为mL: {volume}mL")
return volume
def parse_mass_input(mass_input: Union[str, float]) -> float:
"""
解析质量输入,支持带单位的字符串
Args:
mass_input: 质量输入(如 "19.3 g", "4.5 g", 2.5
Returns:
float: 质量(克)
"""
if isinstance(mass_input, (int, float)):
debug_print(f"⚖️ 质量输入为数值: {mass_input}g")
return float(mass_input)
if not mass_input or not str(mass_input).strip():
debug_print(f"⚠️ 质量输入为空返回0.0g")
return 0.0
mass_str = str(mass_input).lower().strip()
debug_print(f"🔍 解析质量输入: '{mass_str}'")
# 移除空格并提取数字和单位
mass_clean = re.sub(r'\s+', '', mass_str)
# 匹配数字和单位的正则表达式
match = re.match(r'([0-9]*\.?[0-9]+)\s*(g|mg|kg|gram|milligram|kilogram)?', mass_clean)
if not match:
debug_print(f"❌ 无法解析质量: '{mass_str}'返回0.0g")
return 0.0
value = float(match.group(1))
unit = match.group(2) or 'g' # 默认单位为克
# 转换为克
if unit in ['mg', 'milligram']:
mass = value / 1000.0 # mg -> g
debug_print(f"🔄 质量转换: {value}mg → {mass}g")
elif unit in ['kg', 'kilogram']:
mass = value * 1000.0 # kg -> g
debug_print(f"🔄 质量转换: {value}kg → {mass}g")
else: # g, gram 或默认
mass = value # 已经是g
debug_print(f"✅ 质量已为g: {mass}g")
return mass
def parse_time_input(time_input: Union[str, float]) -> float:
"""
解析时间输入,支持带单位的字符串
Args:
time_input: 时间输入(如 "1 h", "20 min", "30 s", 60.0
Returns:
float: 时间(秒)
"""
if isinstance(time_input, (int, float)):
debug_print(f"⏱️ 时间输入为数值: {time_input}")
return float(time_input)
if not time_input or not str(time_input).strip():
debug_print(f"⚠️ 时间输入为空返回0秒")
return 0.0
time_str = str(time_input).lower().strip()
debug_print(f"🔍 解析时间输入: '{time_str}'")
# 处理未知时间
if time_str in ['?', 'unknown', 'tbd']:
default_time = 60.0 # 默认1分钟
debug_print(f"❓ 检测到未知时间,使用默认值: {default_time}s (1分钟) ⏰")
return default_time
# 移除空格并提取数字和单位
time_clean = re.sub(r'\s+', '', time_str)
# 匹配数字和单位的正则表达式
match = re.match(r'([0-9]*\.?[0-9]+)\s*(s|sec|second|min|minute|h|hr|hour|d|day)?', time_clean)
if not match:
debug_print(f"❌ 无法解析时间: '{time_str}'返回0s")
return 0.0
value = float(match.group(1))
unit = match.group(2) or 's' # 默认单位为秒
# 转换为秒
if unit in ['min', 'minute']:
time_sec = value * 60.0 # min -> s
debug_print(f"🔄 时间转换: {value}分钟 → {time_sec}")
elif unit in ['h', 'hr', 'hour']:
time_sec = value * 3600.0 # h -> s
debug_print(f"🔄 时间转换: {value}小时 → {time_sec}")
elif unit in ['d', 'day']:
time_sec = value * 86400.0 # d -> s
debug_print(f"🔄 时间转换: {value}天 → {time_sec}")
else: # s, sec, second 或默认
time_sec = value # 已经是s
debug_print(f"✅ 时间已为秒: {time_sec}")
return time_sec
def find_reagent_vessel(G: nx.DiGraph, reagent: str) -> str:
"""增强版试剂容器查找,支持固体和液体"""
debug_print(f"🔍 开始查找试剂 '{reagent}' 的容器...")
# 🔧 方法1直接搜索 data.reagent_name 和 config.reagent
debug_print(f"📋 方法1: 搜索reagent字段...")
for node in G.nodes():
node_data = G.nodes[node].get('data', {})
node_type = G.nodes[node].get('type', '')
config_data = G.nodes[node].get('config', {})
if not available_flasks:
raise ValueError("没有找到可用的试剂容器")
# 只搜索容器类型的节点
if node_type == 'container':
reagent_name = node_data.get('reagent_name', '').lower()
config_reagent = config_data.get('reagent', '').lower()
reagent_vessel = available_flasks[0]
# 查找泵设备
pump_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_pump']
if pump_nodes:
pump_id = pump_nodes[0]
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": reagent_vessel,
"to_vessel": vessel,
"volume": volume,
"amount": amount,
"time": time,
"viscous": viscous,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
}
})
# 如果需要搅拌,使用 StartStir 而不是 Stir
if stir:
stirrer_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_stirrer']
if stirrer_nodes:
stirrer_id = stirrer_nodes[0]
action_sequence.append({
"device_id": stirrer_id,
"action_name": "start_stir", # 使用 start_stir 而不是 stir
"action_kwargs": {
# 精确匹配
if reagent_name == reagent.lower() or config_reagent == reagent.lower():
debug_print(f"✅ 通过reagent字段精确匹配到容器: {node} 🎯")
return node
# 模糊匹配
if (reagent.lower() in reagent_name and reagent_name) or \
(reagent.lower() in config_reagent and config_reagent):
debug_print(f"✅ 通过reagent字段模糊匹配到容器: {node} 🔍")
return node
# 🔧 方法2常见的容器命名规则
debug_print(f"📋 方法2: 使用命名规则查找...")
reagent_clean = reagent.lower().replace(' ', '_').replace('-', '_')
possible_names = [
reagent_clean,
f"flask_{reagent_clean}",
f"bottle_{reagent_clean}",
f"vessel_{reagent_clean}",
f"{reagent_clean}_flask",
f"{reagent_clean}_bottle",
f"reagent_{reagent_clean}",
f"reagent_bottle_{reagent_clean}",
f"solid_reagent_bottle_{reagent_clean}",
f"reagent_bottle_1", # 通用试剂瓶
f"reagent_bottle_2",
f"reagent_bottle_3"
]
debug_print(f"🔍 尝试的容器名称: {possible_names[:5]}... (共{len(possible_names)}个)")
for name in possible_names:
if name in G.nodes():
node_type = G.nodes[name].get('type', '')
if node_type == 'container':
debug_print(f"✅ 通过命名规则找到容器: {name} 📝")
return name
# 🔧 方法3节点名称模糊匹配
debug_print(f"📋 方法3: 节点名称模糊匹配...")
for node_id in G.nodes():
node_data = G.nodes[node_id]
if node_data.get('type') == 'container':
# 检查节点名称是否包含试剂名称
if reagent_clean in node_id.lower():
debug_print(f"✅ 通过节点名称模糊匹配到容器: {node_id} 🔍")
return node_id
# 检查液体类型匹配
vessel_data = node_data.get('data', {})
liquids = vessel_data.get('liquid', [])
for liquid in liquids:
if isinstance(liquid, dict):
liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
if liquid_type.lower() == reagent.lower():
debug_print(f"✅ 通过液体类型匹配到容器: {node_id} 💧")
return node_id
# 🔧 方法4使用第一个试剂瓶作为备选
debug_print(f"📋 方法4: 查找备选试剂瓶...")
for node_id in G.nodes():
node_data = G.nodes[node_id]
if (node_data.get('type') == 'container' and
('reagent' in node_id.lower() or 'bottle' in node_id.lower())):
debug_print(f"⚠️ 未找到专用容器,使用备选试剂瓶: {node_id} 🔄")
return node_id
debug_print(f"❌ 所有方法都失败了,无法找到容器!")
raise ValueError(f"找不到试剂 '{reagent}' 对应的容器")
def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
"""查找连接到指定容器的搅拌器"""
debug_print(f"🔍 查找连接到容器 '{vessel}' 的搅拌器...")
stirrer_nodes = []
for node in G.nodes():
node_class = G.nodes[node].get('class', '').lower()
if 'stirrer' in node_class:
stirrer_nodes.append(node)
debug_print(f"📋 发现搅拌器: {node}")
debug_print(f"📊 共找到 {len(stirrer_nodes)} 个搅拌器")
# 查找连接到容器的搅拌器
for stirrer in stirrer_nodes:
if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
debug_print(f"✅ 找到连接的搅拌器: {stirrer} 🔗")
return stirrer
# 返回第一个搅拌器
if stirrer_nodes:
debug_print(f"⚠️ 未找到直接连接的搅拌器,使用第一个: {stirrer_nodes[0]} 🔄")
return stirrer_nodes[0]
debug_print(f"❌ 未找到任何搅拌器")
return ""
def find_solid_dispenser(G: nx.DiGraph) -> str:
"""查找固体加样器"""
debug_print(f"🔍 查找固体加样器...")
for node in G.nodes():
node_class = G.nodes[node].get('class', '').lower()
if 'solid_dispenser' in node_class or 'dispenser' in node_class:
debug_print(f"✅ 找到固体加样器: {node} 🥄")
return node
debug_print(f"❌ 未找到固体加样器")
return ""
# 🆕 创建进度日志动作
def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
"""创建一个动作日志"""
full_message = f"{emoji} {message}"
debug_print(full_message)
logger.info(full_message)
print(f"[ACTION] {full_message}", flush=True)
return {
"action_name": "wait",
"action_kwargs": {
"time": 0.1,
"log_message": full_message
}
}
def generate_add_protocol(
G: nx.DiGraph,
vessel: str,
reagent: str,
# 🔧 修复:所有参数都用 Union 类型,支持字符串和数值
volume: Union[str, float] = 0.0,
mass: Union[str, float] = 0.0,
amount: str = "",
time: Union[str, float] = 0.0,
stir: bool = False,
stir_speed: float = 300.0,
viscous: bool = False,
purpose: str = "添加试剂",
# XDL扩展参数
mol: str = "",
event: str = "",
rate_spec: str = "",
equiv: str = "",
ratio: str = "",
**kwargs
) -> List[Dict[str, Any]]:
"""
生成添加试剂协议 - 修复版
支持所有XDL参数和单位
- volume: "2.7 mL", "2.67 mL", "?" 或数值
- mass: "19.3 g", "4.5 g" 或数值
- time: "1 h", "20 min" 或数值(秒)
- mol: "0.28 mol", "16.2 mmol", "25.2 mmol"
- rate_spec: "portionwise", "dropwise"
- event: "A", "B"
- equiv: "1.1"
- ratio: "?", "1:1"
"""
debug_print("=" * 60)
debug_print("🚀 开始生成添加试剂协议")
debug_print(f"📋 原始参数:")
debug_print(f" 🥼 vessel: '{vessel}'")
debug_print(f" 🧪 reagent: '{reagent}'")
debug_print(f" 📏 volume: {volume} (类型: {type(volume)})")
debug_print(f" ⚖️ mass: {mass} (类型: {type(mass)})")
debug_print(f" ⏱️ time: {time} (类型: {type(time)})")
debug_print(f" 🧬 mol: '{mol}'")
debug_print(f" 🎯 event: '{event}'")
debug_print(f" ⚡ rate_spec: '{rate_spec}'")
debug_print(f" 🌪️ stir: {stir}")
debug_print(f" 🔄 stir_speed: {stir_speed} rpm")
debug_print("=" * 60)
action_sequence = []
# === 参数验证 ===
debug_print("🔍 步骤1: 参数验证...")
action_sequence.append(create_action_log(f"开始添加试剂 '{reagent}' 到容器 '{vessel}'", "🎬"))
if not vessel:
debug_print("❌ vessel 参数不能为空")
raise ValueError("vessel 参数不能为空")
if not reagent:
debug_print("❌ reagent 参数不能为空")
raise ValueError("reagent 参数不能为空")
if vessel not in G.nodes():
debug_print(f"❌ 容器 '{vessel}' 不存在于系统中")
raise ValueError(f"容器 '{vessel}' 不存在于系统中")
debug_print("✅ 基本参数验证通过")
# === 🔧 关键修复:参数解析 ===
debug_print("🔍 步骤2: 参数解析...")
action_sequence.append(create_action_log("正在解析添加参数...", "🔍"))
# 解析各种参数为数值
final_volume = parse_volume_input(volume)
final_mass = parse_mass_input(mass)
final_time = parse_time_input(time)
debug_print(f"📊 解析结果:")
debug_print(f" 📏 体积: {final_volume}mL")
debug_print(f" ⚖️ 质量: {final_mass}g")
debug_print(f" ⏱️ 时间: {final_time}s")
debug_print(f" 🧬 摩尔: '{mol}'")
debug_print(f" 🎯 事件: '{event}'")
debug_print(f" ⚡ 速率: '{rate_spec}'")
# === 判断添加类型 ===
debug_print("🔍 步骤3: 判断添加类型...")
# 🔧 修复:现在使用解析后的数值进行比较
is_solid = (final_mass > 0 or (mol and mol.strip() != ""))
is_liquid = (final_volume > 0)
if not is_solid and not is_liquid:
# 默认为液体10mL
is_liquid = True
final_volume = 10.0
debug_print("⚠️ 未指定体积或质量默认为10mL液体")
add_type = "固体" if is_solid else "液体"
add_emoji = "🧂" if is_solid else "💧"
debug_print(f"📋 添加类型: {add_type} {add_emoji}")
action_sequence.append(create_action_log(f"确定添加类型: {add_type} {add_emoji}", "📋"))
# === 执行添加流程 ===
debug_print("🔍 步骤4: 执行添加流程...")
try:
if is_solid:
# === 固体添加路径 ===
debug_print(f"🧂 使用固体添加路径")
action_sequence.append(create_action_log("开始固体试剂添加流程", "🧂"))
solid_dispenser = find_solid_dispenser(G)
if solid_dispenser:
action_sequence.append(create_action_log(f"找到固体加样器: {solid_dispenser}", "🥄"))
# 启动搅拌
if stir:
debug_print("🌪️ 准备启动搅拌...")
action_sequence.append(create_action_log("准备启动搅拌器", "🌪️"))
stirrer_id = find_connected_stirrer(G, vessel)
if stirrer_id:
action_sequence.append(create_action_log(f"启动搅拌器 {stirrer_id} (速度: {stir_speed} rpm)", "🔄"))
action_sequence.append({
"device_id": stirrer_id,
"action_name": "start_stir",
"action_kwargs": {
"vessel": vessel,
"stir_speed": stir_speed,
"purpose": f"准备添加固体 {reagent}"
}
})
# 等待搅拌稳定
action_sequence.append(create_action_log("等待搅拌稳定...", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 3}
})
# 固体加样
add_kwargs = {
"vessel": vessel,
"stir_speed": stir_speed,
"purpose": f"添加 {reagent} 后搅拌"
}
})
return action_sequence
"reagent": reagent,
"purpose": purpose,
"event": event,
"rate_spec": rate_spec
}
if final_mass > 0:
add_kwargs["mass"] = str(final_mass)
action_sequence.append(create_action_log(f"准备添加固体: {final_mass}g", "⚖️"))
if mol and mol.strip():
add_kwargs["mol"] = mol
action_sequence.append(create_action_log(f"按摩尔数添加: {mol}", "🧬"))
if equiv and equiv.strip():
add_kwargs["equiv"] = equiv
action_sequence.append(create_action_log(f"当量: {equiv}", "🔢"))
action_sequence.append(create_action_log("开始固体加样操作", "🥄"))
action_sequence.append({
"device_id": solid_dispenser,
"action_name": "add_solid",
"action_kwargs": add_kwargs
})
action_sequence.append(create_action_log("固体加样完成", ""))
# 添加后等待
if final_time > 0:
wait_minutes = final_time / 60
action_sequence.append(create_action_log(f"等待反应进行 ({wait_minutes:.1f}分钟)", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": final_time}
})
debug_print(f"✅ 固体添加完成")
else:
debug_print("❌ 未找到固体加样器,跳过固体添加")
action_sequence.append(create_action_log("未找到固体加样器,无法添加固体", ""))
else:
# === 液体添加路径 ===
debug_print(f"💧 使用液体添加路径")
action_sequence.append(create_action_log("开始液体试剂添加流程", "💧"))
# 查找试剂容器
action_sequence.append(create_action_log("正在查找试剂容器...", "🔍"))
reagent_vessel = find_reagent_vessel(G, reagent)
action_sequence.append(create_action_log(f"找到试剂容器: {reagent_vessel}", "🧪"))
# 启动搅拌
if stir:
debug_print("🌪️ 准备启动搅拌...")
action_sequence.append(create_action_log("准备启动搅拌器", "🌪️"))
stirrer_id = find_connected_stirrer(G, vessel)
if stirrer_id:
action_sequence.append(create_action_log(f"启动搅拌器 {stirrer_id} (速度: {stir_speed} rpm)", "🔄"))
action_sequence.append({
"device_id": stirrer_id,
"action_name": "start_stir",
"action_kwargs": {
"vessel": vessel,
"stir_speed": stir_speed,
"purpose": f"准备添加液体 {reagent}"
}
})
# 等待搅拌稳定
action_sequence.append(create_action_log("等待搅拌稳定...", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 5}
})
# 计算流速
if final_time > 0:
flowrate = final_volume / final_time * 60 # mL/min
transfer_flowrate = flowrate
debug_print(f"⚡ 根据时间计算流速: {flowrate:.2f} mL/min")
else:
if rate_spec == "dropwise":
flowrate = 0.5 # 滴加,很慢
transfer_flowrate = 0.2
debug_print(f"💧 滴加模式,流速: {flowrate} mL/min")
elif viscous:
flowrate = 1.0 # 粘性液体
transfer_flowrate = 0.3
debug_print(f"🍯 粘性液体,流速: {flowrate} mL/min")
else:
flowrate = 2.5 # 正常流速
transfer_flowrate = 0.5
debug_print(f"⚡ 正常流速: {flowrate} mL/min")
action_sequence.append(create_action_log(f"设置流速: {flowrate:.2f} mL/min", ""))
action_sequence.append(create_action_log(f"开始转移 {final_volume}mL 液体", "🚰"))
# 调用pump protocol
pump_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=reagent_vessel,
to_vessel=vessel,
volume=final_volume,
amount=amount,
time=final_time,
viscous=viscous,
rinsing_solvent="",
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=flowrate,
transfer_flowrate=transfer_flowrate,
rate_spec=rate_spec,
event=event,
through="",
**kwargs
)
action_sequence.extend(pump_actions)
debug_print(f"✅ 液体转移完成,添加了 {len(pump_actions)} 个动作")
action_sequence.append(create_action_log(f"液体转移完成 ({len(pump_actions)} 个操作)", ""))
except Exception as e:
debug_print(f"❌ 试剂添加失败: {str(e)}")
action_sequence.append(create_action_log(f"试剂添加失败: {str(e)}", ""))
# 添加错误日志
action_sequence.append({
"device_id": "system",
"action_name": "log_message",
"action_kwargs": {
"message": f"试剂 '{reagent}' 添加失败: {str(e)}"
}
})
# === 最终结果 ===
debug_print("=" * 60)
debug_print(f"🎉 添加试剂协议生成完成")
debug_print(f"📊 总动作数: {len(action_sequence)}")
debug_print(f"📋 处理总结:")
debug_print(f" 🧪 试剂: {reagent}")
debug_print(f" {add_emoji} 添加类型: {add_type}")
debug_print(f" 🥼 目标容器: {vessel}")
if is_liquid:
debug_print(f" 📏 体积: {final_volume}mL")
if is_solid:
debug_print(f" ⚖️ 质量: {final_mass}g")
debug_print(f" 🧬 摩尔: {mol}")
debug_print("=" * 60)
# 添加完成日志
summary_msg = f"试剂添加协议完成: {reagent}{vessel}"
if is_liquid:
summary_msg += f" ({final_volume}mL)"
if is_solid:
summary_msg += f" ({final_mass}g)"
action_sequence.append(create_action_log(summary_msg, "🎉"))
return action_sequence
# === 便捷函数 ===
def add_liquid_volume(G: nx.DiGraph, vessel: str, reagent: str, volume: Union[str, float],
time: Union[str, float] = 0.0, rate_spec: str = "") -> List[Dict[str, Any]]:
"""添加指定体积的液体试剂"""
debug_print(f"💧 快速添加液体: {reagent} ({volume}) → {vessel}")
return generate_add_protocol(
G, vessel, reagent,
volume=volume,
time=time,
rate_spec=rate_spec
)
def add_solid_mass(G: nx.DiGraph, vessel: str, reagent: str, mass: Union[str, float],
event: str = "") -> List[Dict[str, Any]]:
"""添加指定质量的固体试剂"""
debug_print(f"🧂 快速添加固体: {reagent} ({mass}) → {vessel}")
return generate_add_protocol(
G, vessel, reagent,
mass=mass,
event=event
)
def add_solid_moles(G: nx.DiGraph, vessel: str, reagent: str, mol: str,
event: str = "") -> List[Dict[str, Any]]:
"""按摩尔数添加固体试剂"""
debug_print(f"🧬 按摩尔数添加固体: {reagent} ({mol}) → {vessel}")
return generate_add_protocol(
G, vessel, reagent,
mol=mol,
event=event
)
def add_dropwise_liquid(G: nx.DiGraph, vessel: str, reagent: str, volume: Union[str, float],
time: Union[str, float] = "20 min", event: str = "") -> List[Dict[str, Any]]:
"""滴加液体试剂"""
debug_print(f"💧 滴加液体: {reagent} ({volume}) → {vessel} (用时: {time})")
return generate_add_protocol(
G, vessel, reagent,
volume=volume,
time=time,
rate_spec="dropwise",
event=event
)
def add_portionwise_solid(G: nx.DiGraph, vessel: str, reagent: str, mass: Union[str, float],
time: Union[str, float] = "1 h", event: str = "") -> List[Dict[str, Any]]:
"""分批添加固体试剂"""
debug_print(f"🧂 分批添加固体: {reagent} ({mass}) → {vessel} (用时: {time})")
return generate_add_protocol(
G, vessel, reagent,
mass=mass,
time=time,
rate_spec="portionwise",
event=event
)
# 测试函数
def test_add_protocol():
"""测试添加协议的各种参数解析"""
print("=== ADD PROTOCOL 增强版测试 ===")
# 测试体积解析
debug_print("🧪 测试体积解析...")
volumes = ["2.7 mL", "2.67 mL", "?", 10.0, "1 L", "500 μL"]
for vol in volumes:
result = parse_volume_input(vol)
print(f"📏 体积解析: {vol}{result}mL")
# 测试质量解析
debug_print("⚖️ 测试质量解析...")
masses = ["19.3 g", "4.5 g", 2.5, "500 mg", "1 kg"]
for mass in masses:
result = parse_mass_input(mass)
print(f"⚖️ 质量解析: {mass}{result}g")
# 测试时间解析
debug_print("⏱️ 测试时间解析...")
times = ["1 h", "20 min", "30 s", 60.0, "?"]
for time in times:
result = parse_time_input(time)
print(f"⏱️ 时间解析: {time}{result}s")
print("✅ 测试完成")
if __name__ == "__main__":
test_add_protocol()

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import networkx as nx
import logging
from typing import List, Dict, Any
from .pump_protocol import generate_pump_protocol_with_rinsing
logger = logging.getLogger(__name__)
def debug_print(message):
"""调试输出"""
print(f"[ADJUST_PH] {message}", flush=True)
logger.info(f"[ADJUST_PH] {message}")
# 🆕 创建进度日志动作
def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
"""创建一个动作日志"""
full_message = f"{emoji} {message}"
debug_print(full_message)
logger.info(full_message)
print(f"[ACTION] {full_message}", flush=True)
return {
"action_name": "wait",
"action_kwargs": {
"time": 0.1,
"log_message": full_message
}
}
def find_acid_base_vessel(G: nx.DiGraph, reagent: str) -> str:
"""
查找酸碱试剂容器,支持多种匹配模式
Args:
G: 网络图
reagent: 试剂名称(如 "hydrochloric acid", "sodium hydroxide"
Returns:
str: 试剂容器ID
"""
debug_print(f"🔍 正在查找试剂 '{reagent}' 的容器...")
# 常见酸碱试剂的别名映射
reagent_aliases = {
"hydrochloric acid": ["HCl", "hydrochloric_acid", "hcl", "muriatic_acid"],
"sodium hydroxide": ["NaOH", "sodium_hydroxide", "naoh", "caustic_soda"],
"sulfuric acid": ["H2SO4", "sulfuric_acid", "h2so4"],
"nitric acid": ["HNO3", "nitric_acid", "hno3"],
"acetic acid": ["CH3COOH", "acetic_acid", "glacial_acetic_acid"],
"ammonia": ["NH3", "ammonium_hydroxide", "nh3"],
"potassium hydroxide": ["KOH", "potassium_hydroxide", "koh"]
}
# 构建搜索名称列表
search_names = [reagent.lower()]
debug_print(f"📋 基础搜索名称: {reagent.lower()}")
# 添加别名
for base_name, aliases in reagent_aliases.items():
if reagent.lower() in base_name.lower() or base_name.lower() in reagent.lower():
search_names.extend([alias.lower() for alias in aliases])
debug_print(f"🔗 添加别名: {aliases}")
break
debug_print(f"📝 完整搜索列表: {search_names}")
# 构建可能的容器名称
possible_names = []
for name in search_names:
name_clean = name.replace(" ", "_").replace("-", "_")
possible_names.extend([
f"flask_{name_clean}",
f"bottle_{name_clean}",
f"reagent_{name_clean}",
f"acid_{name_clean}" if "acid" in name else f"base_{name_clean}",
f"{name_clean}_bottle",
f"{name_clean}_flask",
name_clean
])
debug_print(f"🎯 可能的容器名称 (前5个): {possible_names[:5]}... (共{len(possible_names)}个)")
# 第一步:通过容器名称匹配
debug_print(f"📋 方法1: 精确名称匹配...")
for vessel_name in possible_names:
if vessel_name in G.nodes():
debug_print(f"✅ 通过名称匹配找到容器: {vessel_name} 🎯")
return vessel_name
# 第二步:通过模糊匹配
debug_print(f"📋 方法2: 模糊名称匹配...")
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
node_name = G.nodes[node_id].get('name', '').lower()
# 检查是否包含任何搜索名称
for search_name in search_names:
if search_name in node_id.lower() or search_name in node_name:
debug_print(f"✅ 通过模糊匹配找到容器: {node_id} 🔍")
return node_id
# 第三步:通过液体类型匹配
debug_print(f"📋 方法3: 液体类型匹配...")
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
vessel_data = G.nodes[node_id].get('data', {})
liquids = vessel_data.get('liquid', [])
for liquid in liquids:
if isinstance(liquid, dict):
liquid_type = (liquid.get('liquid_type') or liquid.get('name', '')).lower()
reagent_name = vessel_data.get('reagent_name', '').lower()
for search_name in search_names:
if search_name in liquid_type or search_name in reagent_name:
debug_print(f"✅ 通过液体类型匹配找到容器: {node_id} 💧")
return node_id
# 列出可用容器帮助调试
debug_print(f"📊 列出可用容器帮助调试...")
available_containers = []
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
vessel_data = G.nodes[node_id].get('data', {})
liquids = vessel_data.get('liquid', [])
liquid_types = [liquid.get('liquid_type', '') or liquid.get('name', '')
for liquid in liquids if isinstance(liquid, dict)]
available_containers.append({
'id': node_id,
'name': G.nodes[node_id].get('name', ''),
'liquids': liquid_types,
'reagent_name': vessel_data.get('reagent_name', '')
})
debug_print(f"📋 可用容器列表:")
for container in available_containers:
debug_print(f" - 🧪 {container['id']}: {container['name']}")
debug_print(f" 💧 液体: {container['liquids']}")
debug_print(f" 🏷️ 试剂: {container['reagent_name']}")
debug_print(f"❌ 所有匹配方法都失败了")
raise ValueError(f"找不到试剂 '{reagent}' 对应的容器。尝试了: {possible_names[:10]}...")
def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
"""查找与容器相连的搅拌器"""
debug_print(f"🔍 查找连接到容器 '{vessel}' 的搅拌器...")
stirrer_nodes = [node for node in G.nodes()
if (G.nodes[node].get('class') or '') == 'virtual_stirrer']
debug_print(f"📊 发现 {len(stirrer_nodes)} 个搅拌器: {stirrer_nodes}")
for stirrer in stirrer_nodes:
if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
debug_print(f"✅ 找到连接的搅拌器: {stirrer} 🔗")
return stirrer
if stirrer_nodes:
debug_print(f"⚠️ 未找到直接连接的搅拌器,使用第一个: {stirrer_nodes[0]} 🔄")
return stirrer_nodes[0]
debug_print(f"❌ 未找到任何搅拌器")
return None
def calculate_reagent_volume(target_ph_value: float, reagent: str, vessel_volume: float = 100.0) -> float:
"""
估算需要的试剂体积来调节pH
Args:
target_ph_value: 目标pH值
reagent: 试剂名称
vessel_volume: 容器体积 (mL)
Returns:
float: 估算的试剂体积 (mL)
"""
debug_print(f"🧮 计算试剂体积...")
debug_print(f" 📍 目标pH: {target_ph_value}")
debug_print(f" 🧪 试剂: {reagent}")
debug_print(f" 📏 容器体积: {vessel_volume}mL")
# 简化的pH调节体积估算实际应用中需要更精确的计算
if "acid" in reagent.lower() or "hcl" in reagent.lower():
debug_print(f"🍋 检测到酸性试剂")
# 酸性试剂pH越低需要的体积越大
if target_ph_value < 3:
volume = vessel_volume * 0.05 # 5%
debug_print(f" 💪 强酸性 (pH<3): 使用 5% 体积")
elif target_ph_value < 5:
volume = vessel_volume * 0.02 # 2%
debug_print(f" 🔸 中酸性 (pH<5): 使用 2% 体积")
else:
volume = vessel_volume * 0.01 # 1%
debug_print(f" 🔹 弱酸性 (pH≥5): 使用 1% 体积")
elif "hydroxide" in reagent.lower() or "naoh" in reagent.lower():
debug_print(f"🧂 检测到碱性试剂")
# 碱性试剂pH越高需要的体积越大
if target_ph_value > 11:
volume = vessel_volume * 0.05 # 5%
debug_print(f" 💪 强碱性 (pH>11): 使用 5% 体积")
elif target_ph_value > 9:
volume = vessel_volume * 0.02 # 2%
debug_print(f" 🔸 中碱性 (pH>9): 使用 2% 体积")
else:
volume = vessel_volume * 0.01 # 1%
debug_print(f" 🔹 弱碱性 (pH≤9): 使用 1% 体积")
else:
# 未知试剂,使用默认值
volume = vessel_volume * 0.01
debug_print(f"❓ 未知试剂类型,使用默认 1% 体积")
debug_print(f"📊 计算结果: {volume:.2f}mL")
return volume
def generate_adjust_ph_protocol(
G: nx.DiGraph,
vessel: str,
ph_value: float,
reagent: str,
**kwargs
) -> List[Dict[str, Any]]:
"""
生成调节pH的协议序列
Args:
G: 有向图,节点为容器和设备
vessel: 目标容器需要调节pH的容器
ph_value: 目标pH值从XDL传入
reagent: 酸碱试剂名称从XDL传入
**kwargs: 其他可选参数,使用默认值
Returns:
List[Dict[str, Any]]: 动作序列
"""
debug_print("=" * 60)
debug_print("🧪 开始生成pH调节协议")
debug_print(f"📋 原始参数:")
debug_print(f" 🥼 vessel: '{vessel}'")
debug_print(f" 📊 ph_value: {ph_value}")
debug_print(f" 🧪 reagent: '{reagent}'")
debug_print(f" 📦 kwargs: {kwargs}")
debug_print("=" * 60)
action_sequence = []
# 从kwargs中获取可选参数如果没有则使用默认值
volume = kwargs.get('volume', 0.0) # 自动估算体积
stir = kwargs.get('stir', True) # 默认搅拌
stir_speed = kwargs.get('stir_speed', 300.0) # 默认搅拌速度
stir_time = kwargs.get('stir_time', 60.0) # 默认搅拌时间
settling_time = kwargs.get('settling_time', 30.0) # 默认平衡时间
debug_print(f"🔧 处理后的参数:")
debug_print(f" 📏 volume: {volume}mL (0.0表示自动估算)")
debug_print(f" 🌪️ stir: {stir}")
debug_print(f" 🔄 stir_speed: {stir_speed}rpm")
debug_print(f" ⏱️ stir_time: {stir_time}s")
debug_print(f" ⏳ settling_time: {settling_time}s")
# 开始处理
action_sequence.append(create_action_log(f"开始调节pH至 {ph_value}", "🧪"))
action_sequence.append(create_action_log(f"目标容器: {vessel}", "🥼"))
action_sequence.append(create_action_log(f"使用试剂: {reagent}", "⚗️"))
# 1. 验证目标容器存在
debug_print(f"🔍 步骤1: 验证目标容器...")
if vessel not in G.nodes():
debug_print(f"❌ 目标容器 '{vessel}' 不存在于系统中")
raise ValueError(f"目标容器 '{vessel}' 不存在于系统中")
debug_print(f"✅ 目标容器验证通过")
action_sequence.append(create_action_log("目标容器验证通过", ""))
# 2. 查找酸碱试剂容器
debug_print(f"🔍 步骤2: 查找试剂容器...")
action_sequence.append(create_action_log("正在查找试剂容器...", "🔍"))
try:
reagent_vessel = find_acid_base_vessel(G, reagent)
debug_print(f"✅ 找到试剂容器: {reagent_vessel}")
action_sequence.append(create_action_log(f"找到试剂容器: {reagent_vessel}", "🧪"))
except ValueError as e:
debug_print(f"❌ 无法找到试剂容器: {str(e)}")
action_sequence.append(create_action_log(f"试剂容器查找失败: {str(e)}", ""))
raise ValueError(f"无法找到试剂 '{reagent}': {str(e)}")
# 3. 体积估算
debug_print(f"🔍 步骤3: 体积处理...")
if volume <= 0:
action_sequence.append(create_action_log("开始自动估算试剂体积", "🧮"))
# 获取目标容器的体积信息
vessel_data = G.nodes[vessel].get('data', {})
vessel_volume = vessel_data.get('max_volume', 100.0) # 默认100mL
debug_print(f"📏 容器最大体积: {vessel_volume}mL")
estimated_volume = calculate_reagent_volume(ph_value, reagent, vessel_volume)
volume = estimated_volume
debug_print(f"✅ 自动估算试剂体积: {volume:.2f} mL")
action_sequence.append(create_action_log(f"估算试剂体积: {volume:.2f}mL", "📊"))
else:
debug_print(f"📏 使用指定体积: {volume}mL")
action_sequence.append(create_action_log(f"使用指定体积: {volume}mL", "📏"))
# 4. 验证路径存在
debug_print(f"🔍 步骤4: 路径验证...")
action_sequence.append(create_action_log("验证转移路径...", "🛤️"))
try:
path = nx.shortest_path(G, source=reagent_vessel, target=vessel)
debug_print(f"✅ 找到路径: {''.join(path)}")
action_sequence.append(create_action_log(f"找到转移路径: {''.join(path)}", "🛤️"))
except nx.NetworkXNoPath:
debug_print(f"❌ 无法找到转移路径")
action_sequence.append(create_action_log("转移路径不存在", ""))
raise ValueError(f"从试剂容器 '{reagent_vessel}' 到目标容器 '{vessel}' 没有可用路径")
# 5. 搅拌器设置
debug_print(f"🔍 步骤5: 搅拌器设置...")
stirrer_id = None
if stir:
action_sequence.append(create_action_log("准备启动搅拌器", "🌪️"))
try:
stirrer_id = find_connected_stirrer(G, vessel)
if stirrer_id:
debug_print(f"✅ 找到搅拌器 {stirrer_id},启动搅拌")
action_sequence.append(create_action_log(f"启动搅拌器 {stirrer_id} (速度: {stir_speed}rpm)", "🔄"))
action_sequence.append({
"device_id": stirrer_id,
"action_name": "start_stir",
"action_kwargs": {
"vessel": vessel,
"stir_speed": stir_speed,
"purpose": f"pH调节: 启动搅拌,准备添加 {reagent}"
}
})
# 等待搅拌稳定
action_sequence.append(create_action_log("等待搅拌稳定...", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 5}
})
else:
debug_print(f"⚠️ 未找到搅拌器,继续执行")
action_sequence.append(create_action_log("未找到搅拌器,跳过搅拌", "⚠️"))
except Exception as e:
debug_print(f"❌ 搅拌器配置出错: {str(e)}")
action_sequence.append(create_action_log(f"搅拌器配置失败: {str(e)}", ""))
else:
debug_print(f"📋 跳过搅拌设置")
action_sequence.append(create_action_log("跳过搅拌设置", "⏭️"))
# 6. 试剂添加
debug_print(f"🔍 步骤6: 试剂添加...")
action_sequence.append(create_action_log(f"开始添加试剂 {volume:.2f}mL", "🚰"))
# 计算添加时间pH调节需要缓慢添加
addition_time = max(30.0, volume * 2.0) # 至少30秒每mL需要2秒
debug_print(f"⏱️ 计算添加时间: {addition_time}s (缓慢注入)")
action_sequence.append(create_action_log(f"设置添加时间: {addition_time:.0f}s (缓慢注入)", "⏱️"))
try:
action_sequence.append(create_action_log("调用泵协议进行试剂转移", "🔄"))
pump_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=reagent_vessel,
to_vessel=vessel,
volume=volume,
amount="",
time=addition_time,
viscous=False,
rinsing_solvent="", # pH调节不需要清洗
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=0.5, # 缓慢注入
transfer_flowrate=0.3
)
action_sequence.extend(pump_actions)
debug_print(f"✅ 泵协议生成完成,添加了 {len(pump_actions)} 个动作")
action_sequence.append(create_action_log(f"试剂转移完成 ({len(pump_actions)} 个操作)", ""))
except Exception as e:
debug_print(f"❌ 生成泵协议时出错: {str(e)}")
action_sequence.append(create_action_log(f"泵协议生成失败: {str(e)}", ""))
raise ValueError(f"生成泵协议时出错: {str(e)}")
# 7. 混合搅拌
if stir and stirrer_id:
debug_print(f"🔍 步骤7: 混合搅拌...")
action_sequence.append(create_action_log(f"开始混合搅拌 {stir_time:.0f}s", "🌀"))
action_sequence.append({
"device_id": stirrer_id,
"action_name": "stir",
"action_kwargs": {
"stir_time": stir_time,
"stir_speed": stir_speed,
"settling_time": settling_time,
"purpose": f"pH调节: 混合试剂目标pH={ph_value}"
}
})
debug_print(f"✅ 混合搅拌设置完成")
else:
debug_print(f"⏭️ 跳过混合搅拌")
action_sequence.append(create_action_log("跳过混合搅拌", "⏭️"))
# 8. 等待平衡
debug_print(f"🔍 步骤8: 反应平衡...")
action_sequence.append(create_action_log(f"等待pH平衡 {settling_time:.0f}s", "⚖️"))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": settling_time,
"description": f"等待pH平衡到目标值 {ph_value}"
}
})
# 9. 完成总结
total_time = addition_time + stir_time + settling_time
debug_print("=" * 60)
debug_print(f"🎉 pH调节协议生成完成")
debug_print(f"📊 协议统计:")
debug_print(f" 📋 总动作数: {len(action_sequence)}")
debug_print(f" ⏱️ 预计总时间: {total_time:.0f}s ({total_time/60:.1f}分钟)")
debug_print(f" 🧪 试剂: {reagent}")
debug_print(f" 📏 体积: {volume:.2f}mL")
debug_print(f" 📊 目标pH: {ph_value}")
debug_print(f" 🥼 目标容器: {vessel}")
debug_print("=" * 60)
# 添加完成日志
summary_msg = f"pH调节协议完成: {vessel} → pH {ph_value} (使用 {volume:.2f}mL {reagent})"
action_sequence.append(create_action_log(summary_msg, "🎉"))
return action_sequence
def generate_adjust_ph_protocol_stepwise(
G: nx.DiGraph,
vessel: str,
ph_value: float,
reagent: str,
max_volume: float = 10.0,
steps: int = 3
) -> List[Dict[str, Any]]:
"""
分步调节pH的协议更安全避免过度调节
Args:
G: 网络图
vessel: 目标容器
ph_value: 目标pH值
reagent: 酸碱试剂
max_volume: 最大试剂体积
steps: 分步数量
Returns:
List[Dict[str, Any]]: 动作序列
"""
debug_print("=" * 60)
debug_print(f"🔄 开始分步pH调节")
debug_print(f"📋 分步参数:")
debug_print(f" 🥼 vessel: {vessel}")
debug_print(f" 📊 ph_value: {ph_value}")
debug_print(f" 🧪 reagent: {reagent}")
debug_print(f" 📏 max_volume: {max_volume}mL")
debug_print(f" 🔢 steps: {steps}")
debug_print("=" * 60)
action_sequence = []
# 每步添加的体积
step_volume = max_volume / steps
debug_print(f"📊 每步体积: {step_volume:.2f}mL")
action_sequence.append(create_action_log(f"开始分步pH调节 ({steps}步)", "🔄"))
action_sequence.append(create_action_log(f"每步添加: {step_volume:.2f}mL", "📏"))
for i in range(steps):
debug_print(f"🔄 执行第 {i+1}/{steps} 步,添加 {step_volume:.2f}mL")
action_sequence.append(create_action_log(f"{i+1}/{steps} 步开始", "🚀"))
# 生成单步协议
step_actions = generate_adjust_ph_protocol(
G=G,
vessel=vessel,
ph_value=ph_value,
reagent=reagent,
volume=step_volume,
stir=True,
stir_speed=300.0,
stir_time=30.0,
settling_time=20.0
)
action_sequence.extend(step_actions)
debug_print(f"✅ 第 {i+1}/{steps} 步完成,添加了 {len(step_actions)} 个动作")
action_sequence.append(create_action_log(f"{i+1}/{steps} 步完成", ""))
# 步骤间等待
if i < steps - 1:
debug_print(f"⏳ 步骤间等待30s")
action_sequence.append(create_action_log("步骤间等待...", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 30,
"description": f"pH调节第{i+1}步完成,等待下一步"
}
})
debug_print(f"🎉 分步pH调节完成{len(action_sequence)} 个动作")
action_sequence.append(create_action_log("分步pH调节全部完成", "🎉"))
return action_sequence
# 便捷函数常用pH调节
def generate_acidify_protocol(
G: nx.DiGraph,
vessel: str,
target_ph: float = 2.0,
acid: str = "hydrochloric acid"
) -> List[Dict[str, Any]]:
"""酸化协议"""
debug_print(f"🍋 生成酸化协议: {vessel} → pH {target_ph} (使用 {acid})")
return generate_adjust_ph_protocol(
G, vessel, target_ph, acid
)
def generate_basify_protocol(
G: nx.DiGraph,
vessel: str,
target_ph: float = 12.0,
base: str = "sodium hydroxide"
) -> List[Dict[str, Any]]:
"""碱化协议"""
debug_print(f"🧂 生成碱化协议: {vessel} → pH {target_ph} (使用 {base})")
return generate_adjust_ph_protocol(
G, vessel, target_ph, base
)
def generate_neutralize_protocol(
G: nx.DiGraph,
vessel: str,
reagent: str = "sodium hydroxide"
) -> List[Dict[str, Any]]:
"""中和协议pH=7"""
debug_print(f"⚖️ 生成中和协议: {vessel} → pH 7.0 (使用 {reagent})")
return generate_adjust_ph_protocol(
G, vessel, 7.0, reagent
)
# 测试函数
def test_adjust_ph_protocol():
"""测试pH调节协议"""
debug_print("=== ADJUST PH PROTOCOL 增强版测试 ===")
# 测试体积计算
debug_print("🧮 测试体积计算...")
test_cases = [
(2.0, "hydrochloric acid", 100.0),
(4.0, "hydrochloric acid", 100.0),
(12.0, "sodium hydroxide", 100.0),
(10.0, "sodium hydroxide", 100.0),
(7.0, "unknown reagent", 100.0)
]
for ph, reagent, volume in test_cases:
result = calculate_reagent_volume(ph, reagent, volume)
debug_print(f"📊 {reagent} → pH {ph}: {result:.2f}mL")
debug_print("✅ 测试完成")
if __name__ == "__main__":
test_adjust_ph_protocol()

View File

@@ -1,5 +1,59 @@
from typing import List, Dict, Any
import networkx as nx
from .pump_protocol import generate_pump_protocol
def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
"""
获取容器中的液体体积
"""
if vessel not in G.nodes():
return 0.0
vessel_data = G.nodes[vessel].get('data', {})
liquids = vessel_data.get('liquid', [])
total_volume = 0.0
for liquid in liquids:
if isinstance(liquid, dict) and 'liquid_volume' in liquid:
total_volume += liquid['liquid_volume']
return total_volume
def find_centrifuge_device(G: nx.DiGraph) -> str:
"""
查找离心机设备
"""
centrifuge_nodes = [node for node in G.nodes()
if (G.nodes[node].get('class') or '') == 'virtual_centrifuge']
if centrifuge_nodes:
return centrifuge_nodes[0]
raise ValueError("系统中未找到离心机设备")
def find_centrifuge_vessel(G: nx.DiGraph) -> str:
"""
查找离心机专用容器
"""
possible_names = [
"centrifuge_tube",
"centrifuge_vessel",
"tube_centrifuge",
"vessel_centrifuge",
"centrifuge",
"tube_15ml",
"tube_50ml"
]
for vessel_name in possible_names:
if vessel_name in G.nodes():
return vessel_name
raise ValueError(f"未找到离心机容器。尝试了以下名称: {possible_names}")
def generate_centrifuge_protocol(
G: nx.DiGraph,
@@ -9,115 +63,223 @@ def generate_centrifuge_protocol(
temp: float = 25.0
) -> List[Dict[str, Any]]:
"""
生成离心操作的协议序列
生成离心操作的协议序列,复用 pump_protocol 的成熟算法
离心流程:
1. 液体转移:将待离心溶液从源容器转移到离心机容器
2. 离心操作:执行离心分离
3. 上清液转移:将离心后的上清液转移回原容器或新容器
4. 沉淀处理:处理离心沉淀(可选)
Args:
G: 有向图,节点为设备和容器
vessel: 离心容器名称
G: 有向图,节点为设备和容器,边为流体管道
vessel: 包含待离心溶液的容器名称
speed: 离心速度 (rpm)
time: 离心时间 (秒)
temp: 温度 (摄氏度,可选)
temp: 离心温度 (°C)默认25°C
Returns:
List[Dict[str, Any]]: 离心操作的动作序列
Raises:
ValueError: 当找不到离心机设备时抛出异常
ValueError: 当找不到必要的设备时抛出异常
Examples:
centrifuge_protocol = generate_centrifuge_protocol(G, "reactor", 5000, 300, 4.0)
centrifuge_actions = generate_centrifuge_protocol(G, "reaction_mixture", 5000, 600, 4.0)
"""
action_sequence = []
# 查找离心机设备
centrifuge_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_centrifuge']
print(f"CENTRIFUGE: 开始生成离心协议")
print(f" - 源容器: {vessel}")
print(f" - 离心速度: {speed} rpm")
print(f" - 离心时间: {time}s ({time/60:.1f}分钟)")
print(f" - 离心温度: {temp}°C")
if not centrifuge_nodes:
raise ValueError("没有找到可用的离心机设备")
# 使用第一个可用的离心机
centrifuge_id = centrifuge_nodes[0]
# 验证容器是否存在
# 验证源容器存在
if vessel not in G.nodes():
raise ValueError(f"容器 {vessel} 不存在于")
raise ValueError(f"容器 '{vessel}' 不存在于系统")
# 执行离心操作
action_sequence.append({
# 获取源容器中的液体体积
source_volume = get_vessel_liquid_volume(G, vessel)
print(f"CENTRIFUGE: 源容器 {vessel} 中有 {source_volume} mL 液体")
# 查找离心机设备
try:
centrifuge_id = find_centrifuge_device(G)
print(f"CENTRIFUGE: 找到离心机: {centrifuge_id}")
except ValueError as e:
raise ValueError(f"无法找到离心机: {str(e)}")
# 查找离心机容器
try:
centrifuge_vessel = find_centrifuge_vessel(G)
print(f"CENTRIFUGE: 找到离心机容器: {centrifuge_vessel}")
except ValueError as e:
raise ValueError(f"无法找到离心机容器: {str(e)}")
# === 简化的体积计算策略 ===
if source_volume > 0:
# 如果能检测到液体体积,使用实际体积的大部分
transfer_volume = min(source_volume * 0.9, 15.0) # 90%或最多15mL离心管通常较小
print(f"CENTRIFUGE: 检测到液体体积,将转移 {transfer_volume} mL")
else:
# 如果检测不到液体体积,默认转移标准量
transfer_volume = 10.0 # 标准离心管体积
print(f"CENTRIFUGE: 未检测到液体体积,默认转移 {transfer_volume} mL")
# === 第一步:将待离心溶液转移到离心机容器 ===
print(f"CENTRIFUGE: 将 {transfer_volume} mL 溶液从 {vessel} 转移到 {centrifuge_vessel}")
try:
# 使用成熟的 pump_protocol 算法进行液体转移
transfer_to_centrifuge_actions = generate_pump_protocol(
G=G,
from_vessel=vessel,
to_vessel=centrifuge_vessel,
volume=transfer_volume,
flowrate=1.0, # 离心转移用慢速,避免气泡
transfer_flowrate=1.0
)
action_sequence.extend(transfer_to_centrifuge_actions)
except Exception as e:
raise ValueError(f"无法将溶液转移到离心机: {str(e)}")
# 转移后等待
wait_action = {
"action_name": "wait",
"action_kwargs": {"time": 5}
}
action_sequence.append(wait_action)
# === 第二步:执行离心操作 ===
print(f"CENTRIFUGE: 执行离心操作")
centrifuge_action = {
"device_id": centrifuge_id,
"action_name": "centrifuge",
"action_kwargs": {
"vessel": vessel,
"vessel": centrifuge_vessel,
"speed": speed,
"time": time,
"temp": temp
}
})
}
action_sequence.append(centrifuge_action)
# 离心后等待系统稳定
wait_action = {
"action_name": "wait",
"action_kwargs": {"time": 10} # 离心后等待稍长,让沉淀稳定
}
action_sequence.append(wait_action)
# === 第三步:将上清液转移回原容器 ===
print(f"CENTRIFUGE: 将上清液从离心机转移回 {vessel}")
try:
# 估算上清液体积约为转移体积的80% - 假设20%成为沉淀)
supernatant_volume = transfer_volume * 0.8
print(f"CENTRIFUGE: 预计上清液体积 {supernatant_volume} mL")
transfer_back_actions = generate_pump_protocol(
G=G,
from_vessel=centrifuge_vessel,
to_vessel=vessel,
volume=supernatant_volume,
flowrate=0.5, # 上清液转移更慢,避免扰动沉淀
transfer_flowrate=0.5
)
action_sequence.extend(transfer_back_actions)
except Exception as e:
print(f"CENTRIFUGE: 将上清液转移回容器失败: {str(e)}")
# === 第四步:清洗离心机容器 ===
print(f"CENTRIFUGE: 清洗离心机容器")
try:
# 查找清洗溶剂
cleaning_solvent = None
for solvent in ["flask_water", "flask_ethanol", "flask_acetone"]:
if solvent in G.nodes():
cleaning_solvent = solvent
break
if cleaning_solvent:
# 用少量溶剂清洗离心管
cleaning_volume = 5.0 # 5mL清洗
print(f"CENTRIFUGE: 用 {cleaning_volume} mL {cleaning_solvent} 清洗")
# 清洗溶剂加入
cleaning_actions = generate_pump_protocol(
G=G,
from_vessel=cleaning_solvent,
to_vessel=centrifuge_vessel,
volume=cleaning_volume,
flowrate=2.0,
transfer_flowrate=2.0
)
action_sequence.extend(cleaning_actions)
# 将清洗液转移到废液
if "waste_workup" in G.nodes():
waste_actions = generate_pump_protocol(
G=G,
from_vessel=centrifuge_vessel,
to_vessel="waste_workup",
volume=cleaning_volume,
flowrate=2.0,
transfer_flowrate=2.0
)
action_sequence.extend(waste_actions)
except Exception as e:
print(f"CENTRIFUGE: 清洗步骤失败: {str(e)}")
print(f"CENTRIFUGE: 生成了 {len(action_sequence)} 个动作")
print(f"CENTRIFUGE: 离心协议生成完成")
print(f"CENTRIFUGE: 总处理体积: {transfer_volume} mL")
return action_sequence
def generate_multi_step_centrifuge_protocol(
# 便捷函数:常用离心方案
def generate_low_speed_centrifuge_protocol(
G: nx.DiGraph,
vessel: str,
steps: List[Dict[str, Any]]
time: float = 300.0 # 5分钟
) -> List[Dict[str, Any]]:
"""
生成多步骤离心操作的协议序列
Args:
G: 有向图,节点为设备和容器
vessel: 离心容器名称
steps: 离心步骤列表,每个步骤包含 speed, time, temp 参数
Returns:
List[Dict[str, Any]]: 多步骤离心操作的动作序列
Examples:
steps = [
{"speed": 1000, "time": 60, "temp": 4.0}, # 低速预离心
{"speed": 12000, "time": 600, "temp": 4.0} # 高速离心
]
protocol = generate_multi_step_centrifuge_protocol(G, "reactor", steps)
"""
action_sequence = []
# 查找离心机设备
centrifuge_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_centrifuge']
if not centrifuge_nodes:
raise ValueError("没有找到可用的离心机设备")
centrifuge_id = centrifuge_nodes[0]
# 验证容器是否存在
if vessel not in G.nodes():
raise ValueError(f"容器 {vessel} 不存在于图中")
# 执行每个离心步骤
for i, step in enumerate(steps):
speed = step.get('speed', 5000)
time = step.get('time', 300)
temp = step.get('temp', 25.0)
action_sequence.append({
"device_id": centrifuge_id,
"action_name": "centrifuge",
"action_kwargs": {
"vessel": vessel,
"speed": speed,
"time": time,
"temp": temp
}
})
# 步骤间等待时间(除了最后一步)
if i < len(steps) - 1:
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 3}
})
return action_sequence
"""低速离心:细胞分离或大颗粒沉淀"""
return generate_centrifuge_protocol(G, vessel, 1000.0, time, 4.0)
def generate_high_speed_centrifuge_protocol(
G: nx.DiGraph,
vessel: str,
time: float = 600.0 # 10分钟
) -> List[Dict[str, Any]]:
"""高速离心:蛋白质沉淀或小颗粒分离"""
return generate_centrifuge_protocol(G, vessel, 12000.0, time, 4.0)
def generate_standard_centrifuge_protocol(
G: nx.DiGraph,
vessel: str,
time: float = 600.0 # 10分钟
) -> List[Dict[str, Any]]:
"""标准离心:常规样品处理"""
return generate_centrifuge_protocol(G, vessel, 5000.0, time, 25.0)
def generate_cold_centrifuge_protocol(
G: nx.DiGraph,
vessel: str,
speed: float = 5000.0,
time: float = 600.0
) -> List[Dict[str, Any]]:
"""冷冻离心:热敏感样品处理"""
return generate_centrifuge_protocol(G, vessel, speed, time, 4.0)
def generate_ultra_centrifuge_protocol(
G: nx.DiGraph,
vessel: str,
time: float = 1800.0 # 30分钟
) -> List[Dict[str, Any]]:
"""超高速离心:超细颗粒分离"""
return generate_centrifuge_protocol(G, vessel, 15000.0, time, 4.0)

View File

@@ -1,5 +1,147 @@
from typing import List, Dict, Any
import networkx as nx
from .pump_protocol import generate_pump_protocol
def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
"""
查找溶剂容器,支持多种匹配模式:
1. 容器名称匹配(如 flask_water, reagent_bottle_1-DMF
2. 容器内液体类型匹配(如 liquid_type: "DMF", "ethanol"
"""
print(f"CLEAN_VESSEL: 正在查找溶剂 '{solvent}' 的容器...")
# 第一步:通过容器名称匹配
possible_names = [
f"flask_{solvent}", # flask_water, flask_ethanol
f"bottle_{solvent}", # bottle_water, bottle_ethanol
f"vessel_{solvent}", # vessel_water, vessel_ethanol
f"{solvent}_flask", # water_flask, ethanol_flask
f"{solvent}_bottle", # water_bottle, ethanol_bottle
f"{solvent}", # 直接用溶剂名
f"solvent_{solvent}", # solvent_water, solvent_ethanol
f"reagent_bottle_{solvent}", # reagent_bottle_DMF
]
# 尝试名称匹配
for vessel_name in possible_names:
if vessel_name in G.nodes():
print(f"CLEAN_VESSEL: 通过名称匹配找到容器: {vessel_name}")
return vessel_name
# 第二步:通过模糊名称匹配(名称中包含溶剂名)
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
# 检查节点ID或名称中是否包含溶剂名
node_name = G.nodes[node_id].get('name', '').lower()
if (solvent.lower() in node_id.lower() or
solvent.lower() in node_name):
print(f"CLEAN_VESSEL: 通过模糊名称匹配找到容器: {node_id} (名称: {node_name})")
return node_id
# 第三步:通过液体类型匹配
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
vessel_data = G.nodes[node_id].get('data', {})
liquids = vessel_data.get('liquid', [])
for liquid in liquids:
if isinstance(liquid, dict):
# 支持两种格式的液体类型字段
liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
reagent_name = vessel_data.get('reagent_name', '')
config_reagent = G.nodes[node_id].get('config', {}).get('reagent', '')
# 检查多个可能的字段
if (liquid_type.lower() == solvent.lower() or
reagent_name.lower() == solvent.lower() or
config_reagent.lower() == solvent.lower()):
print(f"CLEAN_VESSEL: 通过液体类型匹配找到容器: {node_id}")
print(f" - liquid_type: {liquid_type}")
print(f" - reagent_name: {reagent_name}")
print(f" - config.reagent: {config_reagent}")
return node_id
# 第四步:列出所有可用的容器信息帮助调试
available_containers = []
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
vessel_data = G.nodes[node_id].get('data', {})
config_data = G.nodes[node_id].get('config', {})
liquids = vessel_data.get('liquid', [])
container_info = {
'id': node_id,
'name': G.nodes[node_id].get('name', ''),
'liquid_types': [],
'reagent_name': vessel_data.get('reagent_name', ''),
'config_reagent': config_data.get('reagent', '')
}
for liquid in liquids:
if isinstance(liquid, dict):
liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
if liquid_type:
container_info['liquid_types'].append(liquid_type)
available_containers.append(container_info)
print(f"CLEAN_VESSEL: 可用容器列表:")
for container in available_containers:
print(f" - {container['id']}: {container['name']}")
print(f" 液体类型: {container['liquid_types']}")
print(f" 试剂名称: {container['reagent_name']}")
print(f" 配置试剂: {container['config_reagent']}")
raise ValueError(f"未找到溶剂 '{solvent}' 的容器。尝试了名称匹配: {possible_names}")
def find_solvent_vessel_by_any_match(G: nx.DiGraph, solvent: str) -> str:
"""
增强版溶剂容器查找,支持各种匹配方式的别名函数
"""
return find_solvent_vessel(G, solvent)
def find_waste_vessel(G: nx.DiGraph) -> str:
"""
查找废液容器
"""
possible_waste_names = [
"waste_workup",
"flask_waste",
"bottle_waste",
"waste",
"waste_vessel",
"waste_container"
]
for waste_name in possible_waste_names:
if waste_name in G.nodes():
return waste_name
raise ValueError(f"未找到废液容器。尝试了以下名称: {possible_waste_names}")
def find_connected_heatchill(G: nx.DiGraph, vessel: str) -> str:
"""
查找与指定容器相连的加热冷却设备
"""
# 查找所有加热冷却设备节点
heatchill_nodes = [node for node in G.nodes()
if (G.nodes[node].get('class') or '') == 'virtual_heatchill']
# 检查哪个加热设备与目标容器相连(机械连接)
for heatchill in heatchill_nodes:
if G.has_edge(heatchill, vessel) or G.has_edge(vessel, heatchill):
return heatchill
# 如果没有直接连接,返回第一个可用的加热设备
if heatchill_nodes:
return heatchill_nodes[0]
return None # 没有加热设备也可以工作,只是不能加热
def generate_clean_vessel_protocol(
G: nx.DiGraph,
@@ -10,13 +152,22 @@ def generate_clean_vessel_protocol(
repeats: int = 1
) -> List[Dict[str, Any]]:
"""
生成容器清洗操作的协议序列,使用transfer操作实现清洗
生成容器清洗操作的协议序列,复用 pump_protocol 的成熟算法
清洗流程:
1. 查找溶剂容器和废液容器
2. 如果需要加热,启动加热设备
3. 重复以下操作 repeats 次:
a. 使用 pump_protocol 将溶剂从溶剂容器转移到目标容器
b. (可选) 等待清洗作用时间
c. 使用 pump_protocol 将清洗液从目标容器转移到废液容器
4. 如果加热了,停止加热
Args:
G: 有向图,节点为设备和容器
G: 有向图,节点为设备和容器,边为流体管道
vessel: 要清洗的容器名称
solvent: 用于清洗容器的溶剂名称
volume: 清洗溶剂体积
solvent: 用于清洗的溶剂名称
volume: 每次清洗使用的溶剂体积
temp: 清洗时的温度
repeats: 清洗操作的重复次数,默认为 1
@@ -24,103 +175,265 @@ def generate_clean_vessel_protocol(
List[Dict[str, Any]]: 容器清洗操作的动作序列
Raises:
ValueError: 当找不到必要的设备时抛出异常
ValueError: 当找不到必要的容器或设备时抛出异常
Examples:
clean_vessel_protocol = generate_clean_vessel_protocol(G, "reactor", "water", 50.0, 25.0, 2)
clean_protocol = generate_clean_vessel_protocol(G, "main_reactor", "water", 100.0, 60.0, 2)
"""
action_sequence = []
# 查找虚拟转移泵设备进行清洗操作
pump_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_transfer_pump']
print(f"CLEAN_VESSEL: 开始生成容器清洗协议")
print(f" - 目标容器: {vessel}")
print(f" - 清洗溶剂: {solvent}")
print(f" - 清洗体积: {volume} mL")
print(f" - 清洗温度: {temp}°C")
print(f" - 重复次数: {repeats}")
if not pump_nodes:
raise ValueError("没有找到可用的转移泵设备进行容器清洗")
pump_id = pump_nodes[0]
# 验证容器是否存在
# 验证目标容器存在
if vessel not in G.nodes():
raise ValueError(f"容器 {vessel} 不存在于")
raise ValueError(f"目标容器 '{vessel}' 不存在于系统")
# 查找溶剂容器
solvent_vessel = f"flask_{solvent}"
if solvent_vessel not in G.nodes():
raise ValueError(f"溶剂容器 {solvent_vessel} 不存在于图中")
try:
solvent_vessel = find_solvent_vessel(G, solvent)
print(f"CLEAN_VESSEL: 找到溶剂容器: {solvent_vessel}")
except ValueError as e:
raise ValueError(f"无法找到溶剂容器: {str(e)}")
# 查找废液容器
waste_vessel = "flask_waste"
if waste_vessel not in G.nodes():
raise ValueError(f"废液容器 {waste_vessel} 不存在于图中")
try:
waste_vessel = find_waste_vessel(G)
print(f"CLEAN_VESSEL: 找到废液容器: {waste_vessel}")
except ValueError as e:
raise ValueError(f"无法找到废液容器: {str(e)}")
# 查找加热设备(如果需要加热
heatchill_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_heatchill']
# 查找加热设备(可选
heatchill_id = find_connected_heatchill(G, vessel)
if heatchill_id:
print(f"CLEAN_VESSEL: 找到加热设备: {heatchill_id}")
else:
print(f"CLEAN_VESSEL: 未找到加热设备,将在室温下清洗")
heatchill_id = heatchill_nodes[0] if heatchill_nodes else None
# 第一步:如果需要加热且有加热设备,启动加热
if temp > 25.0 and heatchill_id:
print(f"CLEAN_VESSEL: 启动加热至 {temp}°C")
heatchill_start_action = {
"device_id": heatchill_id,
"action_name": "heat_chill_start",
"action_kwargs": {
"vessel": vessel,
"temp": temp,
"purpose": f"cleaning with {solvent}"
}
}
action_sequence.append(heatchill_start_action)
# 等待温度稳定
wait_action = {
"action_name": "wait",
"action_kwargs": {"time": 30} # 等待30秒让温度稳定
}
action_sequence.append(wait_action)
# 执行清洗操作序列
# 第二步:重复清洗操作
for repeat in range(repeats):
# 1. 如果需要加热,先设置温度
if temp > 25.0 and heatchill_id:
action_sequence.append({
"device_id": heatchill_id,
"action_name": "heat_chill_start",
"action_kwargs": {
"vessel": vessel,
"temp": temp,
"purpose": "cleaning"
}
})
print(f"CLEAN_VESSEL: 执行第 {repeat + 1} 次清洗")
# 2. 使用transfer操作从溶剂容器转移清洗溶剂到目标容器
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": solvent_vessel,
"to_vessel": vessel,
"volume": volume,
"amount": f"cleaning with {solvent} - cycle {repeat + 1}",
"time": 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
# 2a. 使用 pump_protocol 将溶剂转移到目标容器
print(f"CLEAN_VESSEL: 将 {volume} mL {solvent} 转移到 {vessel}")
try:
# 调用成熟的 pump_protocol 算法
add_solvent_actions = generate_pump_protocol(
G=G,
from_vessel=solvent_vessel,
to_vessel=vessel,
volume=volume,
flowrate=2.5, # 适中的流速,避免飞溅
transfer_flowrate=2.5
)
action_sequence.extend(add_solvent_actions)
except Exception as e:
raise ValueError(f"无法将溶剂转移到容器: {str(e)}")
# 2b. 等待清洗作用时间(让溶剂充分清洗容器)
cleaning_wait_time = 60 if temp > 50.0 else 30 # 高温下等待更久
print(f"CLEAN_VESSEL: 等待清洗作用 {cleaning_wait_time}")
wait_action = {
"action_name": "wait",
"action_kwargs": {"time": cleaning_wait_time}
}
action_sequence.append(wait_action)
# 2c. 使用 pump_protocol 将清洗液转移到废液容器
print(f"CLEAN_VESSEL: 将清洗液从 {vessel} 转移到废液容器")
try:
# 调用成熟的 pump_protocol 算法
remove_waste_actions = generate_pump_protocol(
G=G,
from_vessel=vessel,
to_vessel=waste_vessel,
volume=volume,
flowrate=2.5, # 适中的流速
transfer_flowrate=2.5
)
action_sequence.extend(remove_waste_actions)
except Exception as e:
raise ValueError(f"无法将清洗液转移到废液容器: {str(e)}")
# 2d. 清洗循环间的短暂等待
if repeat < repeats - 1: # 不是最后一次清洗
print(f"CLEAN_VESSEL: 清洗循环间等待")
wait_action = {
"action_name": "wait",
"action_kwargs": {"time": 10}
}
})
# 3. 等待清洗作用时间可选可以添加wait操作
# 这里省略wait操作直接进行下一步
# 4. 将清洗后的溶剂转移到废液容器
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": vessel,
"to_vessel": waste_vessel,
"volume": volume,
"amount": f"waste from cleaning {vessel} - cycle {repeat + 1}",
"time": 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
}
})
# 5. 如果加热了,停止加热
if temp > 25.0 and heatchill_id:
action_sequence.append({
"device_id": heatchill_id,
"action_name": "heat_chill_stop",
"action_kwargs": {
"vessel": vessel
}
})
action_sequence.append(wait_action)
return action_sequence
# 第三步:如果加热了,停止加热
if temp > 25.0 and heatchill_id:
print(f"CLEAN_VESSEL: 停止加热")
heatchill_stop_action = {
"device_id": heatchill_id,
"action_name": "heat_chill_stop",
"action_kwargs": {
"vessel": vessel
}
}
action_sequence.append(heatchill_stop_action)
print(f"CLEAN_VESSEL: 生成了 {len(action_sequence)} 个动作")
print(f"CLEAN_VESSEL: 清洗协议生成完成")
return action_sequence
# 便捷函数:常用清洗方案
def generate_quick_clean_protocol(
G: nx.DiGraph,
vessel: str,
solvent: str = "water",
volume: float = 100.0
) -> List[Dict[str, Any]]:
"""快速清洗:室温,单次清洗"""
return generate_clean_vessel_protocol(G, vessel, solvent, volume, 25.0, 1)
def generate_thorough_clean_protocol(
G: nx.DiGraph,
vessel: str,
solvent: str = "water",
volume: float = 150.0,
temp: float = 60.0
) -> List[Dict[str, Any]]:
"""深度清洗:加热,多次清洗"""
return generate_clean_vessel_protocol(G, vessel, solvent, volume, temp, 3)
def generate_organic_clean_protocol(
G: nx.DiGraph,
vessel: str,
volume: float = 100.0
) -> List[Dict[str, Any]]:
"""有机清洗:先用有机溶剂,再用水清洗"""
action_sequence = []
# 第一步:有机溶剂清洗
try:
organic_actions = generate_clean_vessel_protocol(
G, vessel, "acetone", volume, 25.0, 2
)
action_sequence.extend(organic_actions)
except ValueError:
# 如果没有丙酮,尝试乙醇
try:
organic_actions = generate_clean_vessel_protocol(
G, vessel, "ethanol", volume, 25.0, 2
)
action_sequence.extend(organic_actions)
except ValueError:
print("警告:未找到有机溶剂,跳过有机清洗步骤")
# 第二步:水清洗
water_actions = generate_clean_vessel_protocol(
G, vessel, "water", volume, 25.0, 2
)
action_sequence.extend(water_actions)
return action_sequence
def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
"""获取容器中的液体体积(修复版)"""
if vessel not in G.nodes():
return 0.0
vessel_data = G.nodes[vessel].get('data', {})
liquids = vessel_data.get('liquid', [])
total_volume = 0.0
for liquid in liquids:
if isinstance(liquid, dict):
# 支持两种格式:新格式 (name, volume) 和旧格式 (liquid_type, liquid_volume)
volume = liquid.get('volume') or liquid.get('liquid_volume', 0.0)
total_volume += volume
return total_volume
def get_vessel_liquid_types(G: nx.DiGraph, vessel: str) -> List[str]:
"""获取容器中所有液体的类型"""
if vessel not in G.nodes():
return []
vessel_data = G.nodes[vessel].get('data', {})
liquids = vessel_data.get('liquid', [])
liquid_types = []
for liquid in liquids:
if isinstance(liquid, dict):
# 支持两种格式的液体类型字段
liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
if liquid_type:
liquid_types.append(liquid_type)
return liquid_types
def find_vessel_by_content(G: nx.DiGraph, content: str) -> List[str]:
"""
根据内容物查找所有匹配的容器
返回匹配容器的ID列表
"""
matching_vessels = []
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
# 检查容器名称匹配
node_name = G.nodes[node_id].get('name', '').lower()
if content.lower() in node_id.lower() or content.lower() in node_name:
matching_vessels.append(node_id)
continue
# 检查液体类型匹配
vessel_data = G.nodes[node_id].get('data', {})
liquids = vessel_data.get('liquid', [])
config_data = G.nodes[node_id].get('config', {})
# 检查 reagent_name 和 config.reagent
reagent_name = vessel_data.get('reagent_name', '').lower()
config_reagent = config_data.get('reagent', '').lower()
if (content.lower() == reagent_name or
content.lower() == config_reagent):
matching_vessels.append(node_id)
continue
# 检查液体列表
for liquid in liquids:
if isinstance(liquid, dict):
liquid_type = liquid.get('liquid_type') or liquid.get('name', '')
if liquid_type.lower() == content.lower():
matching_vessels.append(node_id)
break
return matching_vessels

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@@ -0,0 +1,185 @@
import networkx as nx
from typing import List, Dict, Any
def find_connected_heater(G: nx.DiGraph, vessel: str) -> str:
"""
查找与容器相连的加热器
Args:
G: 网络图
vessel: 容器名称
Returns:
str: 加热器ID如果没有则返回None
"""
print(f"DRY: 正在查找与容器 '{vessel}' 相连的加热器...")
# 查找所有加热器节点
heater_nodes = [node for node in G.nodes()
if ('heater' in node.lower() or
'heat' in node.lower() or
G.nodes[node].get('class') == 'virtual_heatchill' or
G.nodes[node].get('type') == 'heater')]
print(f"DRY: 找到的加热器节点: {heater_nodes}")
# 检查是否有加热器与目标容器相连
for heater in heater_nodes:
if G.has_edge(heater, vessel) or G.has_edge(vessel, heater):
print(f"DRY: 找到与容器 '{vessel}' 相连的加热器: {heater}")
return heater
# 如果没有直接连接,查找距离最近的加热器
for heater in heater_nodes:
try:
path = nx.shortest_path(G, source=heater, target=vessel)
if len(path) <= 3: # 最多2个中间节点
print(f"DRY: 找到距离较近的加热器: {heater}, 路径: {''.join(path)}")
return heater
except nx.NetworkXNoPath:
continue
print(f"DRY: 未找到与容器 '{vessel}' 相连的加热器")
return None
def generate_dry_protocol(
G: nx.DiGraph,
compound: str,
vessel: str,
**kwargs # 接收其他可能的参数但不使用
) -> List[Dict[str, Any]]:
"""
生成干燥协议序列
Args:
G: 有向图,节点为容器和设备
compound: 化合物名称从XDL传入
vessel: 目标容器从XDL传入
**kwargs: 其他可选参数,但不使用
Returns:
List[Dict[str, Any]]: 动作序列
"""
action_sequence = []
# 默认参数
dry_temp = 60.0 # 默认干燥温度 60°C
dry_time = 3600.0 # 默认干燥时间 1小时3600秒
simulation_time = 60.0 # 模拟时间 1分钟
print(f"🌡️ DRY: 开始生成干燥协议 ✨")
print(f" 🧪 化合物: {compound}")
print(f" 🥽 容器: {vessel}")
print(f" 🔥 干燥温度: {dry_temp}°C")
print(f" ⏰ 干燥时间: {dry_time/60:.0f} 分钟")
# 1. 验证目标容器存在
print(f"\n📋 步骤1: 验证目标容器 '{vessel}' 是否存在...")
if vessel not in G.nodes():
print(f"⚠️ DRY: 警告 - 容器 '{vessel}' 不存在于系统中,跳过干燥 😢")
return action_sequence
print(f"✅ 容器 '{vessel}' 验证通过!")
# 2. 查找相连的加热器
print(f"\n🔍 步骤2: 查找与容器相连的加热器...")
heater_id = find_connected_heater(G, vessel)
if heater_id is None:
print(f"😭 DRY: 警告 - 未找到与容器 '{vessel}' 相连的加热器,跳过干燥")
print(f"🎭 添加模拟干燥动作...")
# 添加一个等待动作,表示干燥过程(模拟)
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 10.0, # 模拟等待时间
"description": f"模拟干燥 {compound} (无加热器可用)"
}
})
print(f"📄 DRY: 协议生成完成,共 {len(action_sequence)} 个动作 🎯")
return action_sequence
print(f"🎉 找到加热器: {heater_id}!")
# 3. 启动加热器进行干燥
print(f"\n🚀 步骤3: 开始执行干燥流程...")
print(f"🔥 启动加热器 {heater_id} 进行干燥")
# 3.1 启动加热
print(f" ⚡ 动作1: 启动加热到 {dry_temp}°C...")
action_sequence.append({
"device_id": heater_id,
"action_name": "heat_chill_start",
"action_kwargs": {
"vessel": vessel,
"temp": dry_temp,
"purpose": f"干燥 {compound}"
}
})
print(f" ✅ 加热器启动命令已添加 🔥")
# 3.2 等待温度稳定
print(f" ⏳ 动作2: 等待温度稳定...")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 10.0,
"description": f"等待温度稳定到 {dry_temp}°C"
}
})
print(f" ✅ 温度稳定等待命令已添加 🌡️")
# 3.3 保持干燥温度
print(f" 🔄 动作3: 保持干燥温度 {simulation_time/60:.0f} 分钟...")
action_sequence.append({
"device_id": heater_id,
"action_name": "heat_chill",
"action_kwargs": {
"vessel": vessel,
"temp": dry_temp,
"time": simulation_time,
"purpose": f"干燥 {compound},保持温度 {dry_temp}°C"
}
})
print(f" ✅ 温度保持命令已添加 🌡️⏰")
# 3.4 停止加热
print(f" ⏹️ 动作4: 停止加热...")
action_sequence.append({
"device_id": heater_id,
"action_name": "heat_chill_stop",
"action_kwargs": {
"vessel": vessel,
"purpose": f"干燥完成,停止加热"
}
})
print(f" ✅ 停止加热命令已添加 🛑")
# 3.5 等待冷却
print(f" ❄️ 动作5: 等待冷却...")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 10.0, # 等待10秒冷却
"description": f"等待 {compound} 冷却"
}
})
print(f" ✅ 冷却等待命令已添加 🧊")
print(f"\n🎊 DRY: 协议生成完成,共 {len(action_sequence)} 个动作 🎯")
print(f"⏱️ DRY: 预计总时间: {(dry_time + 360)/60:.0f} 分钟 ⌛")
print(f"🏁 所有动作序列准备就绪! ✨")
return action_sequence
# 测试函数
def test_dry_protocol():
"""测试干燥协议"""
print("=== DRY PROTOCOL 测试 ===")
print("测试完成")
if __name__ == "__main__":
test_dry_protocol()

View File

@@ -1,143 +1,772 @@
import numpy as np
import networkx as nx
import logging
import uuid
import sys
from typing import List, Dict, Any, Optional
from .pump_protocol import generate_pump_protocol_with_rinsing, generate_pump_protocol
# 设置日志
logger = logging.getLogger(__name__)
# 确保输出编码为UTF-8
if hasattr(sys.stdout, 'reconfigure'):
try:
sys.stdout.reconfigure(encoding='utf-8')
sys.stderr.reconfigure(encoding='utf-8')
except:
pass
def debug_print(message):
"""调试输出函数 - 支持中文"""
try:
# 确保消息是字符串格式
safe_message = str(message)
print(f"[抽真空充气] {safe_message}", flush=True)
logger.info(f"[抽真空充气] {safe_message}")
except UnicodeEncodeError:
# 如果编码失败,尝试替换不支持的字符
safe_message = str(message).encode('utf-8', errors='replace').decode('utf-8')
print(f"[抽真空充气] {safe_message}", flush=True)
logger.info(f"[抽真空充气] {safe_message}")
except Exception as e:
# 最后的安全措施
fallback_message = f"日志输出错误: {repr(message)}"
print(f"[抽真空充气] {fallback_message}", flush=True)
logger.info(f"[抽真空充气] {fallback_message}")
def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
"""创建一个动作日志 - 支持中文和emoji"""
try:
full_message = f"{emoji} {message}"
debug_print(full_message)
logger.info(full_message)
return {
"action_name": "wait",
"action_kwargs": {
"time": 0.1,
"log_message": full_message,
"progress_message": full_message
}
}
except Exception as e:
# 如果emoji有问题使用纯文本
safe_message = f"[日志] {message}"
debug_print(safe_message)
logger.info(safe_message)
return {
"action_name": "wait",
"action_kwargs": {
"time": 0.1,
"log_message": safe_message,
"progress_message": safe_message
}
}
def find_gas_source(G: nx.DiGraph, gas: str) -> str:
"""
根据气体名称查找对应的气源,支持多种匹配模式:
1. 容器名称匹配
2. 气体类型匹配data.gas_type
3. 默认气源
"""
debug_print(f"🔍 正在查找气体 '{gas}' 的气源...")
# 第一步:通过容器名称匹配
debug_print(f"📋 方法1: 容器名称匹配...")
gas_source_patterns = [
f"gas_source_{gas}",
f"gas_{gas}",
f"flask_{gas}",
f"{gas}_source",
f"source_{gas}",
f"reagent_bottle_{gas}",
f"bottle_{gas}"
]
debug_print(f"🎯 尝试的容器名称: {gas_source_patterns}")
for pattern in gas_source_patterns:
if pattern in G.nodes():
debug_print(f"✅ 通过名称找到气源: {pattern}")
return pattern
# 第二步:通过气体类型匹配 (data.gas_type)
debug_print(f"📋 方法2: 气体类型匹配...")
for node_id in G.nodes():
node_data = G.nodes[node_id]
node_class = node_data.get('class', '') or ''
# 检查是否是气源设备
if ('gas_source' in node_class or
'gas' in node_id.lower() or
node_id.startswith('flask_')):
# 检查 data.gas_type
data = node_data.get('data', {})
gas_type = data.get('gas_type', '')
if gas_type.lower() == gas.lower():
debug_print(f"✅ 通过气体类型找到气源: {node_id} (气体类型: {gas_type})")
return node_id
# 检查 config.gas_type
config = node_data.get('config', {})
config_gas_type = config.get('gas_type', '')
if config_gas_type.lower() == gas.lower():
debug_print(f"✅ 通过配置气体类型找到气源: {node_id} (配置气体类型: {config_gas_type})")
return node_id
# 第三步:查找所有可用的气源设备
debug_print(f"📋 方法3: 查找可用气源...")
available_gas_sources = []
for node_id in G.nodes():
node_data = G.nodes[node_id]
node_class = node_data.get('class', '') or ''
if ('gas_source' in node_class or
'gas' in node_id.lower() or
(node_id.startswith('flask_') and any(g in node_id.lower() for g in ['air', 'nitrogen', 'argon']))):
data = node_data.get('data', {})
gas_type = data.get('gas_type', '未知')
available_gas_sources.append(f"{node_id} (气体类型: {gas_type})")
debug_print(f"📊 可用气源: {available_gas_sources}")
# 第四步:如果找不到特定气体,使用默认的第一个气源
debug_print(f"📋 方法4: 查找默认气源...")
default_gas_sources = [
node for node in G.nodes()
if ((G.nodes[node].get('class') or '').find('virtual_gas_source') != -1
or 'gas_source' in node)
]
if default_gas_sources:
default_source = default_gas_sources[0]
debug_print(f"⚠️ 未找到特定气体 '{gas}',使用默认气源: {default_source}")
return default_source
debug_print(f"❌ 所有方法都失败了!")
raise ValueError(f"无法找到气体 '{gas}' 的气源。可用气源: {available_gas_sources}")
def find_vacuum_pump(G: nx.DiGraph) -> str:
"""查找真空泵设备"""
debug_print("🔍 正在查找真空泵...")
vacuum_pumps = []
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if ('virtual_vacuum_pump' in node_class or
'vacuum_pump' in node.lower() or
'vacuum' in node_class.lower()):
vacuum_pumps.append(node)
debug_print(f"📋 发现真空泵: {node}")
if not vacuum_pumps:
debug_print(f"❌ 系统中未找到真空泵")
raise ValueError("系统中未找到真空泵")
debug_print(f"✅ 使用真空泵: {vacuum_pumps[0]}")
return vacuum_pumps[0]
def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> Optional[str]:
"""查找与指定容器相连的搅拌器"""
debug_print(f"🔍 正在查找与容器 {vessel} 连接的搅拌器...")
stirrer_nodes = []
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if 'virtual_stirrer' in node_class or 'stirrer' in node.lower():
stirrer_nodes.append(node)
debug_print(f"📋 发现搅拌器: {node}")
debug_print(f"📊 找到的搅拌器总数: {len(stirrer_nodes)}")
# 检查哪个搅拌器与目标容器相连
for stirrer in stirrer_nodes:
if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
debug_print(f"✅ 找到连接的搅拌器: {stirrer}")
return stirrer
# 如果没有连接的搅拌器,返回第一个可用的
if stirrer_nodes:
debug_print(f"⚠️ 未找到直接连接的搅拌器,使用第一个可用的: {stirrer_nodes[0]}")
return stirrer_nodes[0]
debug_print("❌ 未找到搅拌器")
return None
def find_vacuum_solenoid_valve(G: nx.DiGraph, vacuum_pump: str) -> Optional[str]:
"""查找真空泵相关的电磁阀"""
debug_print(f"🔍 正在查找真空泵 {vacuum_pump} 的电磁阀...")
# 查找所有电磁阀
solenoid_valves = []
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if ('solenoid' in node_class.lower() or 'solenoid_valve' in node.lower()):
solenoid_valves.append(node)
debug_print(f"📋 发现电磁阀: {node}")
debug_print(f"📊 找到的电磁阀: {solenoid_valves}")
# 检查连接关系
debug_print(f"📋 方法1: 检查连接关系...")
for solenoid in solenoid_valves:
if G.has_edge(solenoid, vacuum_pump) or G.has_edge(vacuum_pump, solenoid):
debug_print(f"✅ 找到连接的真空电磁阀: {solenoid}")
return solenoid
# 通过命名规则查找
debug_print(f"📋 方法2: 检查命名规则...")
for solenoid in solenoid_valves:
if 'vacuum' in solenoid.lower() or solenoid == 'solenoid_valve_1':
debug_print(f"✅ 通过命名找到真空电磁阀: {solenoid}")
return solenoid
debug_print("⚠️ 未找到真空电磁阀")
return None
def find_gas_solenoid_valve(G: nx.DiGraph, gas_source: str) -> Optional[str]:
"""查找气源相关的电磁阀"""
debug_print(f"🔍 正在查找气源 {gas_source} 的电磁阀...")
# 查找所有电磁阀
solenoid_valves = []
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if ('solenoid' in node_class.lower() or 'solenoid_valve' in node.lower()):
solenoid_valves.append(node)
debug_print(f"📊 找到的电磁阀: {solenoid_valves}")
# 检查连接关系
debug_print(f"📋 方法1: 检查连接关系...")
for solenoid in solenoid_valves:
if G.has_edge(gas_source, solenoid) or G.has_edge(solenoid, gas_source):
debug_print(f"✅ 找到连接的气源电磁阀: {solenoid}")
return solenoid
# 通过命名规则查找
debug_print(f"📋 方法2: 检查命名规则...")
for solenoid in solenoid_valves:
if 'gas' in solenoid.lower() or solenoid == 'solenoid_valve_2':
debug_print(f"✅ 通过命名找到气源电磁阀: {solenoid}")
return solenoid
debug_print("⚠️ 未找到气源电磁阀")
return None
def generate_evacuateandrefill_protocol(
G: nx.DiGraph,
vessel: str,
gas: str,
repeats: int = 1
) -> list[dict]:
G: nx.DiGraph,
vessel: str,
gas: str,
**kwargs
) -> List[Dict[str, Any]]:
"""
生成操作的动作序列
生成抽真空和充气操作的动作序列 - 中文版
:param G: 有向图, 节点为容器和注射泵, 边为流体管道, A→B边的属性为管道接A端的阀门位置
:param from_vessel: 容器A
:param to_vessel: 容器B
:param volume: 转移的体积
:param flowrate: 最终注入容器B时的流速
:param transfer_flowrate: 泵骨架中转移流速(若不指定,默认与注入流速相同)
:return: 泵操作的动作序列
Args:
G: 设备图
vessel: 目标容器名称(必需)
gas: 气体名称(必需)
**kwargs: 其他参数(兼容性)
Returns:
List[Dict[str, Any]]: 动作序列
"""
# 生成电磁阀、真空泵、气源操作的动作序列
vacuum_action_sequence = []
nodes = G.nodes(data=True)
# 硬编码重复次数为 3
repeats = 3
# 找到和 vessel 相连的电磁阀和真空泵、气源
vacuum_backbone = {"vessel": vessel}
# 生成协议ID
protocol_id = str(uuid.uuid4())
debug_print(f"🆔 生成协议ID: {protocol_id}")
for neighbor in G.neighbors(vessel):
if nodes[neighbor]["class"].startswith("solenoid_valve"):
for neighbor2 in G.neighbors(neighbor):
if neighbor2 == vessel:
continue
if nodes[neighbor2]["class"].startswith("vacuum_pump"):
vacuum_backbone.update({"vacuum_valve": neighbor, "pump": neighbor2})
break
elif nodes[neighbor2]["class"].startswith("gas_source"):
vacuum_backbone.update({"gas_valve": neighbor, "gas": neighbor2})
break
# 判断是否设备齐全
if len(vacuum_backbone) < 5:
print(f"\n\n\n{vacuum_backbone}\n\n\n")
raise ValueError("Not all devices are connected to the vessel.")
debug_print("=" * 60)
debug_print("🧪 开始生成抽真空充气协议")
debug_print(f"📋 原始参数:")
debug_print(f" 🥼 容器: '{vessel}'")
debug_print(f" 💨 气体: '{gas}'")
debug_print(f" 🔄 循环次数: {repeats} (硬编码)")
debug_print(f" 📦 其他参数: {kwargs}")
debug_print("=" * 60)
# 生成操作的动作序列
for i in range(repeats):
# 打开真空泵阀门、关闭气源阀门
vacuum_action_sequence.append([
{
"device_id": vacuum_backbone["vacuum_valve"],
"action_name": "set_valve_position",
"action_kwargs": {
"command": "OPEN"
}
},
{
"device_id": vacuum_backbone["gas_valve"],
"action_name": "set_valve_position",
"action_kwargs": {
"command": "CLOSED"
}
}
])
action_sequence = []
# === 参数验证和修正 ===
debug_print("🔍 步骤1: 参数验证和修正...")
action_sequence.append(create_action_log(f"开始抽真空充气操作 - 容器: {vessel}", "🎬"))
action_sequence.append(create_action_log(f"目标气体: {gas}", "💨"))
action_sequence.append(create_action_log(f"循环次数: {repeats}", "🔄"))
# 验证必需参数
if not vessel:
debug_print("❌ 容器参数不能为空")
raise ValueError("容器参数不能为空")
if not gas:
debug_print("❌ 气体参数不能为空")
raise ValueError("气体参数不能为空")
if vessel not in G.nodes():
debug_print(f"❌ 容器 '{vessel}' 在系统中不存在")
raise ValueError(f"容器 '{vessel}' 在系统中不存在")
debug_print("✅ 基本参数验证通过")
action_sequence.append(create_action_log("参数验证通过", ""))
# 标准化气体名称
debug_print("🔧 标准化气体名称...")
gas_aliases = {
'n2': 'nitrogen',
'ar': 'argon',
'air': 'air',
'o2': 'oxygen',
'co2': 'carbon_dioxide',
'h2': 'hydrogen',
'氮气': 'nitrogen',
'氩气': 'argon',
'空气': 'air',
'氧气': 'oxygen',
'二氧化碳': 'carbon_dioxide',
'氢气': 'hydrogen'
}
original_gas = gas
gas_lower = gas.lower().strip()
if gas_lower in gas_aliases:
gas = gas_aliases[gas_lower]
debug_print(f"🔄 标准化气体名称: {original_gas} -> {gas}")
action_sequence.append(create_action_log(f"气体名称标准化: {original_gas} -> {gas}", "🔄"))
debug_print(f"📋 最终参数: 容器={vessel}, 气体={gas}, 重复={repeats}")
# === 查找设备 ===
debug_print("🔍 步骤2: 查找设备...")
action_sequence.append(create_action_log("正在查找相关设备...", "🔍"))
try:
vacuum_pump = find_vacuum_pump(G)
action_sequence.append(create_action_log(f"找到真空泵: {vacuum_pump}", "🌪️"))
# 打开真空泵、关闭气源
vacuum_action_sequence.append([
{
"device_id": vacuum_backbone["pump"],
"action_name": "set_status",
"action_kwargs": {
"string": "ON"
}
},
{
"device_id": vacuum_backbone["gas"],
"action_name": "set_status",
"action_kwargs": {
"string": "OFF"
}
}
])
vacuum_action_sequence.append({"action_name": "wait", "action_kwargs": {"time": 60}})
gas_source = find_gas_source(G, gas)
action_sequence.append(create_action_log(f"找到气源: {gas_source}", "💨"))
# 关闭真空泵阀门、打开气源阀门
vacuum_action_sequence.append([
{
"device_id": vacuum_backbone["vacuum_valve"],
"action_name": "set_valve_position",
"action_kwargs": {
"command": "CLOSED"
}
},
{
"device_id": vacuum_backbone["gas_valve"],
"action_name": "set_valve_position",
"action_kwargs": {
"command": "OPEN"
}
}
])
vacuum_solenoid = find_vacuum_solenoid_valve(G, vacuum_pump)
if vacuum_solenoid:
action_sequence.append(create_action_log(f"找到真空电磁阀: {vacuum_solenoid}", "🚪"))
else:
action_sequence.append(create_action_log("未找到真空电磁阀", "⚠️"))
# 关闭真空泵、打开气源
vacuum_action_sequence.append([
{
"device_id": vacuum_backbone["pump"],
"action_name": "set_status",
"action_kwargs": {
"string": "OFF"
}
},
{
"device_id": vacuum_backbone["gas"],
"action_name": "set_status",
"action_kwargs": {
"string": "ON"
}
gas_solenoid = find_gas_solenoid_valve(G, gas_source)
if gas_solenoid:
action_sequence.append(create_action_log(f"找到气源电磁阀: {gas_solenoid}", "🚪"))
else:
action_sequence.append(create_action_log("未找到气源电磁阀", "⚠️"))
stirrer_id = find_connected_stirrer(G, vessel)
if stirrer_id:
action_sequence.append(create_action_log(f"找到搅拌器: {stirrer_id}", "🌪️"))
else:
action_sequence.append(create_action_log("未找到搅拌器", "⚠️"))
debug_print(f"📊 设备配置:")
debug_print(f" 🌪️ 真空泵: {vacuum_pump}")
debug_print(f" 💨 气源: {gas_source}")
debug_print(f" 🚪 真空电磁阀: {vacuum_solenoid}")
debug_print(f" 🚪 气源电磁阀: {gas_solenoid}")
debug_print(f" 🌪️ 搅拌器: {stirrer_id}")
except Exception as e:
debug_print(f"❌ 设备查找失败: {str(e)}")
action_sequence.append(create_action_log(f"设备查找失败: {str(e)}", ""))
raise ValueError(f"设备查找失败: {str(e)}")
# === 参数设置 ===
debug_print("🔍 步骤3: 参数设置...")
action_sequence.append(create_action_log("设置操作参数...", "⚙️"))
# 根据气体类型调整参数
if gas.lower() in ['nitrogen', 'argon']:
VACUUM_VOLUME = 25.0
REFILL_VOLUME = 25.0
PUMP_FLOW_RATE = 2.0
VACUUM_TIME = 30.0
REFILL_TIME = 20.0
debug_print("💨 惰性气体: 使用标准参数")
action_sequence.append(create_action_log("检测到惰性气体,使用标准参数", "💨"))
elif gas.lower() in ['air', 'oxygen']:
VACUUM_VOLUME = 20.0
REFILL_VOLUME = 20.0
PUMP_FLOW_RATE = 1.5
VACUUM_TIME = 45.0
REFILL_TIME = 25.0
debug_print("🔥 活性气体: 使用保守参数")
action_sequence.append(create_action_log("检测到活性气体,使用保守参数", "🔥"))
else:
VACUUM_VOLUME = 15.0
REFILL_VOLUME = 15.0
PUMP_FLOW_RATE = 1.0
VACUUM_TIME = 60.0
REFILL_TIME = 30.0
debug_print("❓ 未知气体: 使用安全参数")
action_sequence.append(create_action_log("未知气体类型,使用安全参数", ""))
STIR_SPEED = 200.0
debug_print(f"⚙️ 操作参数:")
debug_print(f" 📏 真空体积: {VACUUM_VOLUME}mL")
debug_print(f" 📏 充气体积: {REFILL_VOLUME}mL")
debug_print(f" ⚡ 泵流速: {PUMP_FLOW_RATE}mL/s")
debug_print(f" ⏱️ 真空时间: {VACUUM_TIME}s")
debug_print(f" ⏱️ 充气时间: {REFILL_TIME}s")
debug_print(f" 🌪️ 搅拌速度: {STIR_SPEED}RPM")
action_sequence.append(create_action_log(f"真空体积: {VACUUM_VOLUME}mL", "📏"))
action_sequence.append(create_action_log(f"充气体积: {REFILL_VOLUME}mL", "📏"))
action_sequence.append(create_action_log(f"泵流速: {PUMP_FLOW_RATE}mL/s", ""))
# === 路径验证 ===
debug_print("🔍 步骤4: 路径验证...")
action_sequence.append(create_action_log("验证传输路径...", "🛤️"))
try:
# 验证抽真空路径
if nx.has_path(G, vessel, vacuum_pump):
vacuum_path = nx.shortest_path(G, source=vessel, target=vacuum_pump)
debug_print(f"✅ 真空路径: {' -> '.join(vacuum_path)}")
action_sequence.append(create_action_log(f"真空路径: {' -> '.join(vacuum_path)}", "🛤️"))
else:
debug_print(f"⚠️ 真空路径不存在,继续执行但可能有问题")
action_sequence.append(create_action_log("真空路径检查: 路径不存在", "⚠️"))
# 验证充气路径
if nx.has_path(G, gas_source, vessel):
gas_path = nx.shortest_path(G, source=gas_source, target=vessel)
debug_print(f"✅ 气体路径: {' -> '.join(gas_path)}")
action_sequence.append(create_action_log(f"气体路径: {' -> '.join(gas_path)}", "🛤️"))
else:
debug_print(f"⚠️ 气体路径不存在,继续执行但可能有问题")
action_sequence.append(create_action_log("气体路径检查: 路径不存在", "⚠️"))
except Exception as e:
debug_print(f"⚠️ 路径验证失败: {str(e)},继续执行")
action_sequence.append(create_action_log(f"路径验证失败: {str(e)}", "⚠️"))
# === 启动搅拌器 ===
debug_print("🔍 步骤5: 启动搅拌器...")
if stirrer_id:
debug_print(f"🌪️ 启动搅拌器: {stirrer_id}")
action_sequence.append(create_action_log(f"启动搅拌器 {stirrer_id} (速度: {STIR_SPEED}rpm)", "🌪️"))
action_sequence.append({
"device_id": stirrer_id,
"action_name": "start_stir",
"action_kwargs": {
"vessel": vessel,
"stir_speed": STIR_SPEED,
"purpose": "抽真空充气前预搅拌"
}
])
vacuum_action_sequence.append({"action_name": "wait", "action_kwargs": {"time": 60}})
})
# 等待搅拌稳定
action_sequence.append(create_action_log("等待搅拌稳定...", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 5.0}
})
else:
debug_print("⚠️ 未找到搅拌器,跳过搅拌器启动")
action_sequence.append(create_action_log("跳过搅拌器启动", "⏭️"))
# === 执行循环 ===
debug_print("🔍 步骤6: 执行抽真空-充气循环...")
action_sequence.append(create_action_log(f"开始 {repeats} 次抽真空-充气循环", "🔄"))
for cycle in range(repeats):
debug_print(f"=== 第 {cycle+1}/{repeats} 轮循环 ===")
action_sequence.append(create_action_log(f"{cycle+1}/{repeats} 轮循环开始", "🚀"))
# ============ 抽真空阶段 ============
debug_print(f"🌪️ 抽真空阶段开始")
action_sequence.append(create_action_log("开始抽真空阶段", "🌪️"))
# 启动真空泵
debug_print(f"🔛 启动真空泵: {vacuum_pump}")
action_sequence.append(create_action_log(f"启动真空泵: {vacuum_pump}", "🔛"))
action_sequence.append({
"device_id": vacuum_pump,
"action_name": "set_status",
"action_kwargs": {"string": "ON"}
})
# 开启真空电磁阀
if vacuum_solenoid:
debug_print(f"🚪 打开真空电磁阀: {vacuum_solenoid}")
action_sequence.append(create_action_log(f"打开真空电磁阀: {vacuum_solenoid}", "🚪"))
action_sequence.append({
"device_id": vacuum_solenoid,
"action_name": "set_valve_position",
"action_kwargs": {"command": "OPEN"}
})
# 抽真空操作
debug_print(f"🌪️ 抽真空操作: {vessel} -> {vacuum_pump}")
action_sequence.append(create_action_log(f"开始抽真空: {vessel} -> {vacuum_pump}", "🌪️"))
try:
vacuum_transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=vessel,
to_vessel=vacuum_pump,
volume=VACUUM_VOLUME,
amount="",
time=0.0,
viscous=False,
rinsing_solvent="",
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=PUMP_FLOW_RATE,
transfer_flowrate=PUMP_FLOW_RATE
)
if vacuum_transfer_actions:
action_sequence.extend(vacuum_transfer_actions)
debug_print(f"✅ 添加了 {len(vacuum_transfer_actions)} 个抽真空动作")
action_sequence.append(create_action_log(f"抽真空协议完成 ({len(vacuum_transfer_actions)} 个操作)", ""))
else:
debug_print("⚠️ 抽真空协议返回空序列,添加手动动作")
action_sequence.append(create_action_log("抽真空协议为空,使用手动等待", "⚠️"))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": VACUUM_TIME}
})
except Exception as e:
debug_print(f"❌ 抽真空失败: {str(e)}")
action_sequence.append(create_action_log(f"抽真空失败: {str(e)}", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": VACUUM_TIME}
})
# 抽真空后等待
wait_minutes = VACUUM_TIME / 60
action_sequence.append(create_action_log(f"抽真空后等待 ({wait_minutes:.1f} 分钟)", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": VACUUM_TIME}
})
# 关闭真空电磁阀
if vacuum_solenoid:
debug_print(f"🚪 关闭真空电磁阀: {vacuum_solenoid}")
action_sequence.append(create_action_log(f"关闭真空电磁阀: {vacuum_solenoid}", "🚪"))
action_sequence.append({
"device_id": vacuum_solenoid,
"action_name": "set_valve_position",
"action_kwargs": {"command": "CLOSED"}
})
# 关闭真空泵
debug_print(f"🔴 停止真空泵: {vacuum_pump}")
action_sequence.append(create_action_log(f"停止真空泵: {vacuum_pump}", "🔴"))
action_sequence.append({
"device_id": vacuum_pump,
"action_name": "set_status",
"action_kwargs": {"string": "OFF"}
})
# 阶段间等待
action_sequence.append(create_action_log("抽真空阶段完成,短暂等待", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 5.0}
})
# ============ 充气阶段 ============
debug_print(f"💨 充气阶段开始")
action_sequence.append(create_action_log("开始气体充气阶段", "💨"))
# 启动气源
debug_print(f"🔛 启动气源: {gas_source}")
action_sequence.append(create_action_log(f"启动气源: {gas_source}", "🔛"))
action_sequence.append({
"device_id": gas_source,
"action_name": "set_status",
"action_kwargs": {"string": "ON"}
})
# 开启气源电磁阀
if gas_solenoid:
debug_print(f"🚪 打开气源电磁阀: {gas_solenoid}")
action_sequence.append(create_action_log(f"打开气源电磁阀: {gas_solenoid}", "🚪"))
action_sequence.append({
"device_id": gas_solenoid,
"action_name": "set_valve_position",
"action_kwargs": {"command": "OPEN"}
})
# 充气操作
debug_print(f"💨 充气操作: {gas_source} -> {vessel}")
action_sequence.append(create_action_log(f"开始气体充气: {gas_source} -> {vessel}", "💨"))
try:
gas_transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=gas_source,
to_vessel=vessel,
volume=REFILL_VOLUME,
amount="",
time=0.0,
viscous=False,
rinsing_solvent="",
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=PUMP_FLOW_RATE,
transfer_flowrate=PUMP_FLOW_RATE
)
if gas_transfer_actions:
action_sequence.extend(gas_transfer_actions)
debug_print(f"✅ 添加了 {len(gas_transfer_actions)} 个充气动作")
action_sequence.append(create_action_log(f"气体充气协议完成 ({len(gas_transfer_actions)} 个操作)", ""))
else:
debug_print("⚠️ 充气协议返回空序列,添加手动动作")
action_sequence.append(create_action_log("充气协议为空,使用手动等待", "⚠️"))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": REFILL_TIME}
})
except Exception as e:
debug_print(f"❌ 气体充气失败: {str(e)}")
action_sequence.append(create_action_log(f"气体充气失败: {str(e)}", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": REFILL_TIME}
})
# 充气后等待
refill_wait_minutes = REFILL_TIME / 60
action_sequence.append(create_action_log(f"充气后等待 ({refill_wait_minutes:.1f} 分钟)", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": REFILL_TIME}
})
# 关闭气源电磁阀
if gas_solenoid:
debug_print(f"🚪 关闭气源电磁阀: {gas_solenoid}")
action_sequence.append(create_action_log(f"关闭气源电磁阀: {gas_solenoid}", "🚪"))
action_sequence.append({
"device_id": gas_solenoid,
"action_name": "set_valve_position",
"action_kwargs": {"command": "CLOSED"}
})
# 关闭气源
vacuum_action_sequence.append(
{
"device_id": vacuum_backbone["gas"],
"action_name": "set_status",
"action_kwargs": {
"string": "OFF"
}
}
)
debug_print(f"🔴 停止气源: {gas_source}")
action_sequence.append(create_action_log(f"停止气源: {gas_source}", "🔴"))
action_sequence.append({
"device_id": gas_source,
"action_name": "set_status",
"action_kwargs": {"string": "OFF"}
})
# 关闭阀门
vacuum_action_sequence.append(
{
"device_id": vacuum_backbone["gas_valve"],
"action_name": "set_valve_position",
"action_kwargs": {
"command": "CLOSED"
}
}
)
return vacuum_action_sequence
# 循环间等待
if cycle < repeats - 1:
debug_print(f"⏳ 等待下一个循环...")
action_sequence.append(create_action_log("等待下一个循环...", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 10.0}
})
else:
action_sequence.append(create_action_log(f"{cycle+1}/{repeats} 轮循环完成", ""))
# === 停止搅拌器 ===
debug_print("🔍 步骤7: 停止搅拌器...")
if stirrer_id:
debug_print(f"🛑 停止搅拌器: {stirrer_id}")
action_sequence.append(create_action_log(f"停止搅拌器: {stirrer_id}", "🛑"))
action_sequence.append({
"device_id": stirrer_id,
"action_name": "stop_stir",
"action_kwargs": {"vessel": vessel}
})
else:
action_sequence.append(create_action_log("跳过搅拌器停止", "⏭️"))
# === 最终等待 ===
action_sequence.append(create_action_log("最终稳定等待...", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 10.0}
})
# === 总结 ===
total_time = (VACUUM_TIME + REFILL_TIME + 25) * repeats + 20
debug_print("=" * 60)
debug_print(f"🎉 抽真空充气协议生成完成")
debug_print(f"📊 协议统计:")
debug_print(f" 📋 总动作数: {len(action_sequence)}")
debug_print(f" ⏱️ 预计总时间: {total_time:.0f}s ({total_time/60:.1f} 分钟)")
debug_print(f" 🥼 处理容器: {vessel}")
debug_print(f" 💨 使用气体: {gas}")
debug_print(f" 🔄 重复次数: {repeats}")
debug_print("=" * 60)
# 添加完成日志
summary_msg = f"抽真空充气协议完成: {vessel} (使用 {gas}{repeats} 次循环)"
action_sequence.append(create_action_log(summary_msg, "🎉"))
return action_sequence
# === 便捷函数 ===
def generate_nitrogen_purge_protocol(G: nx.DiGraph, vessel: str, **kwargs) -> List[Dict[str, Any]]:
"""生成氮气置换协议"""
debug_print(f"💨 生成氮气置换协议: {vessel}")
return generate_evacuateandrefill_protocol(G, vessel, "nitrogen", **kwargs)
def generate_argon_purge_protocol(G: nx.DiGraph, vessel: str, **kwargs) -> List[Dict[str, Any]]:
"""生成氩气置换协议"""
debug_print(f"💨 生成氩气置换协议: {vessel}")
return generate_evacuateandrefill_protocol(G, vessel, "argon", **kwargs)
def generate_air_purge_protocol(G: nx.DiGraph, vessel: str, **kwargs) -> List[Dict[str, Any]]:
"""生成空气置换协议"""
debug_print(f"💨 生成空气置换协议: {vessel}")
return generate_evacuateandrefill_protocol(G, vessel, "air", **kwargs)
def generate_inert_atmosphere_protocol(G: nx.DiGraph, vessel: str, gas: str = "nitrogen", **kwargs) -> List[Dict[str, Any]]:
"""生成惰性气氛协议"""
debug_print(f"🛡️ 生成惰性气氛协议: {vessel} (使用 {gas})")
return generate_evacuateandrefill_protocol(G, vessel, gas, **kwargs)
# 测试函数
def test_evacuateandrefill_protocol():
"""测试抽真空充气协议"""
debug_print("=== 抽真空充气协议增强中文版测试 ===")
debug_print("✅ 测试完成")
if __name__ == "__main__":
test_evacuateandrefill_protocol()

View File

@@ -0,0 +1,143 @@
# import numpy as np
# import networkx as nx
# def generate_evacuateandrefill_protocol(
# G: nx.DiGraph,
# vessel: str,
# gas: str,
# repeats: int = 1
# ) -> list[dict]:
# """
# 生成泵操作的动作序列。
# :param G: 有向图, 节点为容器和注射泵, 边为流体管道, A→B边的属性为管道接A端的阀门位置
# :param from_vessel: 容器A
# :param to_vessel: 容器B
# :param volume: 转移的体积
# :param flowrate: 最终注入容器B时的流速
# :param transfer_flowrate: 泵骨架中转移流速(若不指定,默认与注入流速相同)
# :return: 泵操作的动作序列
# """
# # 生成电磁阀、真空泵、气源操作的动作序列
# vacuum_action_sequence = []
# nodes = G.nodes(data=True)
# # 找到和 vessel 相连的电磁阀和真空泵、气源
# vacuum_backbone = {"vessel": vessel}
# for neighbor in G.neighbors(vessel):
# if nodes[neighbor]["class"].startswith("solenoid_valve"):
# for neighbor2 in G.neighbors(neighbor):
# if neighbor2 == vessel:
# continue
# if nodes[neighbor2]["class"].startswith("vacuum_pump"):
# vacuum_backbone.update({"vacuum_valve": neighbor, "pump": neighbor2})
# break
# elif nodes[neighbor2]["class"].startswith("gas_source"):
# vacuum_backbone.update({"gas_valve": neighbor, "gas": neighbor2})
# break
# # 判断是否设备齐全
# if len(vacuum_backbone) < 5:
# print(f"\n\n\n{vacuum_backbone}\n\n\n")
# raise ValueError("Not all devices are connected to the vessel.")
# # 生成操作的动作序列
# for i in range(repeats):
# # 打开真空泵阀门、关闭气源阀门
# vacuum_action_sequence.append([
# {
# "device_id": vacuum_backbone["vacuum_valve"],
# "action_name": "set_valve_position",
# "action_kwargs": {
# "command": "OPEN"
# }
# },
# {
# "device_id": vacuum_backbone["gas_valve"],
# "action_name": "set_valve_position",
# "action_kwargs": {
# "command": "CLOSED"
# }
# }
# ])
# # 打开真空泵、关闭气源
# vacuum_action_sequence.append([
# {
# "device_id": vacuum_backbone["pump"],
# "action_name": "set_status",
# "action_kwargs": {
# "string": "ON"
# }
# },
# {
# "device_id": vacuum_backbone["gas"],
# "action_name": "set_status",
# "action_kwargs": {
# "string": "OFF"
# }
# }
# ])
# vacuum_action_sequence.append({"action_name": "wait", "action_kwargs": {"time": 60}})
# # 关闭真空泵阀门、打开气源阀门
# vacuum_action_sequence.append([
# {
# "device_id": vacuum_backbone["vacuum_valve"],
# "action_name": "set_valve_position",
# "action_kwargs": {
# "command": "CLOSED"
# }
# },
# {
# "device_id": vacuum_backbone["gas_valve"],
# "action_name": "set_valve_position",
# "action_kwargs": {
# "command": "OPEN"
# }
# }
# ])
# # 关闭真空泵、打开气源
# vacuum_action_sequence.append([
# {
# "device_id": vacuum_backbone["pump"],
# "action_name": "set_status",
# "action_kwargs": {
# "string": "OFF"
# }
# },
# {
# "device_id": vacuum_backbone["gas"],
# "action_name": "set_status",
# "action_kwargs": {
# "string": "ON"
# }
# }
# ])
# vacuum_action_sequence.append({"action_name": "wait", "action_kwargs": {"time": 60}})
# # 关闭气源
# vacuum_action_sequence.append(
# {
# "device_id": vacuum_backbone["gas"],
# "action_name": "set_status",
# "action_kwargs": {
# "string": "OFF"
# }
# }
# )
# # 关闭阀门
# vacuum_action_sequence.append(
# {
# "device_id": vacuum_backbone["gas_valve"],
# "action_name": "set_valve_position",
# "action_kwargs": {
# "command": "CLOSED"
# }
# }
# )
# return vacuum_action_sequence

View File

@@ -1,81 +1,366 @@
import numpy as np
from typing import List, Dict, Any, Optional, Union
import networkx as nx
import logging
import re
logger = logging.getLogger(__name__)
def debug_print(message):
"""调试输出"""
print(f"🧪 [EVAPORATE] {message}", flush=True)
logger.info(f"[EVAPORATE] {message}")
def parse_time_input(time_input: Union[str, float]) -> float:
"""
解析时间输入,支持带单位的字符串
Args:
time_input: 时间输入(如 "3 min", "180", "0.5 h" 等)
Returns:
float: 时间(秒)
"""
if isinstance(time_input, (int, float)):
debug_print(f"⏱️ 时间输入为数字: {time_input}s ✨")
return float(time_input)
if not time_input or not str(time_input).strip():
debug_print(f"⚠️ 时间输入为空,使用默认值: 180s (3分钟) 🕐")
return 180.0 # 默认3分钟
time_str = str(time_input).lower().strip()
debug_print(f"🔍 解析时间输入: '{time_str}' 📝")
# 处理未知时间
if time_str in ['?', 'unknown', 'tbd']:
default_time = 180.0 # 默认3分钟
debug_print(f"❓ 检测到未知时间,使用默认值: {default_time}s (3分钟) 🤷‍♀️")
return default_time
# 移除空格并提取数字和单位
time_clean = re.sub(r'\s+', '', time_str)
# 匹配数字和单位的正则表达式
match = re.match(r'([0-9]*\.?[0-9]+)\s*(s|sec|second|min|minute|h|hr|hour|d|day)?', time_clean)
if not match:
# 如果无法解析,尝试直接转换为数字(默认秒)
try:
value = float(time_str)
debug_print(f"✅ 时间解析成功: {time_str}{value}s无单位默认秒")
return value
except ValueError:
debug_print(f"❌ 无法解析时间: '{time_str}'使用默认值180s (3分钟) 😅")
return 180.0
value = float(match.group(1))
unit = match.group(2) or 's' # 默认单位为秒
# 转换为秒
if unit in ['min', 'minute']:
time_sec = value * 60.0 # min -> s
debug_print(f"🕐 时间转换: {value} 分钟 → {time_sec}s ⏰")
elif unit in ['h', 'hr', 'hour']:
time_sec = value * 3600.0 # h -> s
debug_print(f"🕐 时间转换: {value} 小时 → {time_sec}s ({time_sec/60:.1f}分钟) ⏰")
elif unit in ['d', 'day']:
time_sec = value * 86400.0 # d -> s
debug_print(f"🕐 时间转换: {value} 天 → {time_sec}s ({time_sec/3600:.1f}小时) ⏰")
else: # s, sec, second 或默认
time_sec = value # 已经是s
debug_print(f"🕐 时间转换: {value}s → {time_sec}s (已是秒) ⏰")
return time_sec
def find_rotavap_device(G: nx.DiGraph, vessel: str = None) -> Optional[str]:
"""
在组态图中查找旋转蒸发仪设备
Args:
G: 设备图
vessel: 指定的设备名称(可选)
Returns:
str: 找到的旋转蒸发仪设备ID如果没找到返回None
"""
debug_print("🔍 开始查找旋转蒸发仪设备... 🌪️")
# 如果指定了vessel先检查是否存在且是旋转蒸发仪
if vessel:
debug_print(f"🎯 检查指定设备: {vessel} 🔧")
if vessel in G.nodes():
node_data = G.nodes[vessel]
node_class = node_data.get('class', '')
node_type = node_data.get('type', '')
debug_print(f"📋 设备信息 {vessel}: class={node_class}, type={node_type}")
# 检查是否为旋转蒸发仪
if any(keyword in str(node_class).lower() for keyword in ['rotavap', 'rotary', 'evaporat']):
debug_print(f"🎉 找到指定的旋转蒸发仪: {vessel}")
return vessel
elif node_type == 'device':
debug_print(f"✅ 指定设备存在,尝试直接使用: {vessel} 🔧")
return vessel
else:
debug_print(f"❌ 指定的设备 {vessel} 不存在 😞")
# 在所有设备中查找旋转蒸发仪
debug_print("🔎 在所有设备中搜索旋转蒸发仪... 🕵️‍♀️")
rotavap_candidates = []
for node_id, node_data in G.nodes(data=True):
node_class = node_data.get('class', '')
node_type = node_data.get('type', '')
# 跳过非设备节点
if node_type != 'device':
continue
# 检查设备类型
if any(keyword in str(node_class).lower() for keyword in ['rotavap', 'rotary', 'evaporat']):
rotavap_candidates.append(node_id)
debug_print(f"🌟 找到旋转蒸发仪候选: {node_id} (class: {node_class}) 🌪️")
elif any(keyword in str(node_id).lower() for keyword in ['rotavap', 'rotary', 'evaporat']):
rotavap_candidates.append(node_id)
debug_print(f"🌟 找到旋转蒸发仪候选 (按名称): {node_id} 🌪️")
if rotavap_candidates:
selected = rotavap_candidates[0] # 选择第一个找到的
debug_print(f"🎯 选择旋转蒸发仪: {selected} 🏆")
return selected
debug_print("😭 未找到旋转蒸发仪设备 💔")
return None
def find_connected_vessel(G: nx.DiGraph, rotavap_device: str) -> Optional[str]:
"""
查找与旋转蒸发仪连接的容器
Args:
G: 设备图
rotavap_device: 旋转蒸发仪设备ID
Returns:
str: 连接的容器ID如果没找到返回None
"""
debug_print(f"🔗 查找与 {rotavap_device} 连接的容器... 🥽")
# 查看旋转蒸发仪的子设备
rotavap_data = G.nodes[rotavap_device]
children = rotavap_data.get('children', [])
debug_print(f"👶 检查子设备: {children}")
for child_id in children:
if child_id in G.nodes():
child_data = G.nodes[child_id]
child_type = child_data.get('type', '')
if child_type == 'container':
debug_print(f"🎉 找到连接的容器: {child_id} 🥽✨")
return child_id
# 查看邻接的容器
debug_print("🤝 检查邻接设备...")
for neighbor in G.neighbors(rotavap_device):
neighbor_data = G.nodes[neighbor]
neighbor_type = neighbor_data.get('type', '')
if neighbor_type == 'container':
debug_print(f"🎉 找到邻接的容器: {neighbor} 🥽✨")
return neighbor
debug_print("😞 未找到连接的容器 💔")
return None
def generate_evaporate_protocol(
G: nx.DiGraph,
G: nx.DiGraph,
vessel: str,
pressure: float,
temp: float,
time: float,
stir_speed: float
) -> list[dict]:
pressure: float = 0.1,
temp: float = 60.0,
time: Union[str, float] = "180", # 🔧 修改:支持字符串时间
stir_speed: float = 100.0,
solvent: str = "",
**kwargs
) -> List[Dict[str, Any]]:
"""
Generate a protocol to evaporate a solution from a vessel.
生成蒸发操作的协议序列 - 支持单位
:param G: Directed graph. Nodes are containers and pumps, edges are fluidic connections.
:param vessel: Vessel to clean.
:param solvent: Solvent to clean vessel with.
:param volume: Volume of solvent to clean vessel with.
:param temp: Temperature to heat vessel to while cleaning.
:param repeats: Number of cleaning cycles to perform.
:return: List of actions to clean vessel.
Args:
G: 设备图
vessel: 容器名称或旋转蒸发仪名称
pressure: 真空度 (bar)默认0.1
temp: 加热温度 (°C)默认60
time: 蒸发时间(支持 "3 min", "180", "0.5 h" 等)
stir_speed: 旋转速度 (RPM)默认100
solvent: 溶剂名称(用于参数优化)
**kwargs: 其他参数(兼容性)
Returns:
List[Dict[str, Any]]: 动作序列
"""
# 生成泵操作的动作序列
pump_action_sequence = []
reactor_volume = 500.0
transfer_flowrate = flowrate = 2.5
debug_print("🌟" * 20)
debug_print("🌪️ 开始生成蒸发协议(支持单位)✨")
debug_print(f"📝 输入参数:")
debug_print(f" 🥽 vessel: {vessel}")
debug_print(f" 💨 pressure: {pressure} bar")
debug_print(f" 🌡️ temp: {temp}°C")
debug_print(f" ⏰ time: {time} (类型: {type(time)})")
debug_print(f" 🌪️ stir_speed: {stir_speed} RPM")
debug_print(f" 🧪 solvent: '{solvent}'")
debug_print("🌟" * 20)
# 开启冷凝器
pump_action_sequence.append({
"device_id": "rotavap_chiller",
"action_name": "set_temperature",
"action_kwargs": {
"command": "-40"
}
})
# TODO: 通过温度反馈改为 HeatChillToTemp而非等待固定时间
pump_action_sequence.append({
# === 步骤1: 查找旋转蒸发仪设备 ===
debug_print("📍 步骤1: 查找旋转蒸发仪设备... 🔍")
# 验证vessel参数
if not vessel:
debug_print("❌ vessel 参数不能为空! 😱")
raise ValueError("vessel 参数不能为空")
# 查找旋转蒸发仪设备
rotavap_device = find_rotavap_device(G, vessel)
if not rotavap_device:
debug_print("💥 未找到旋转蒸发仪设备! 😭")
raise ValueError(f"未找到旋转蒸发仪设备。请检查组态图中是否包含 class 包含 'rotavap''rotary''evaporat' 的设备")
debug_print(f"🎉 成功找到旋转蒸发仪: {rotavap_device}")
# === 步骤2: 确定目标容器 ===
debug_print("📍 步骤2: 确定目标容器... 🥽")
target_vessel = vessel
# 如果vessel就是旋转蒸发仪设备查找连接的容器
if vessel == rotavap_device:
debug_print("🔄 vessel就是旋转蒸发仪查找连接的容器...")
connected_vessel = find_connected_vessel(G, rotavap_device)
if connected_vessel:
target_vessel = connected_vessel
debug_print(f"✅ 使用连接的容器: {target_vessel} 🥽✨")
else:
debug_print(f"⚠️ 未找到连接的容器,使用设备本身: {rotavap_device} 🔧")
target_vessel = rotavap_device
elif vessel in G.nodes() and G.nodes[vessel].get('type') == 'container':
debug_print(f"✅ 使用指定的容器: {vessel} 🥽✨")
target_vessel = vessel
else:
debug_print(f"⚠️ 容器 '{vessel}' 不存在或类型不正确,使用旋转蒸发仪设备: {rotavap_device} 🔧")
target_vessel = rotavap_device
# === 🔧 新增步骤3单位解析处理 ===
debug_print("📍 步骤3: 单位解析处理... ⚡")
# 解析时间
final_time = parse_time_input(time)
debug_print(f"🎯 时间解析完成: {time}{final_time}s ({final_time/60:.1f}分钟) ⏰✨")
# === 步骤4: 参数验证和修正 ===
debug_print("📍 步骤4: 参数验证和修正... 🔧")
# 修正参数范围
if pressure <= 0 or pressure > 1.0:
debug_print(f"⚠️ 真空度 {pressure} bar 超出范围,修正为 0.1 bar 💨")
pressure = 0.1
else:
debug_print(f"✅ 真空度 {pressure} bar 在正常范围内 💨")
if temp < 10.0 or temp > 200.0:
debug_print(f"⚠️ 温度 {temp}°C 超出范围,修正为 60°C 🌡️")
temp = 60.0
else:
debug_print(f"✅ 温度 {temp}°C 在正常范围内 🌡️")
if final_time <= 0:
debug_print(f"⚠️ 时间 {final_time}s 无效,修正为 180s (3分钟) ⏰")
final_time = 180.0
else:
debug_print(f"✅ 时间 {final_time}s ({final_time/60:.1f}分钟) 有效 ⏰")
if stir_speed < 10.0 or stir_speed > 300.0:
debug_print(f"⚠️ 旋转速度 {stir_speed} RPM 超出范围,修正为 100 RPM 🌪️")
stir_speed = 100.0
else:
debug_print(f"✅ 旋转速度 {stir_speed} RPM 在正常范围内 🌪️")
# 根据溶剂优化参数
if solvent:
debug_print(f"🧪 根据溶剂 '{solvent}' 优化参数... 🔬")
solvent_lower = solvent.lower()
if any(s in solvent_lower for s in ['water', 'aqueous', 'h2o']):
temp = max(temp, 80.0)
pressure = max(pressure, 0.2)
debug_print("💧 水系溶剂:提高温度和真空度 🌡️💨")
elif any(s in solvent_lower for s in ['ethanol', 'methanol', 'acetone']):
temp = min(temp, 50.0)
pressure = min(pressure, 0.05)
debug_print("🍺 易挥发溶剂:降低温度和真空度 🌡️💨")
elif any(s in solvent_lower for s in ['dmso', 'dmi', 'toluene']):
temp = max(temp, 100.0)
pressure = min(pressure, 0.01)
debug_print("🔥 高沸点溶剂:提高温度,降低真空度 🌡️💨")
else:
debug_print("🧪 通用溶剂,使用标准参数 ✨")
else:
debug_print("🤷‍♀️ 未指定溶剂,使用默认参数 ✨")
debug_print(f"🎯 最终参数: pressure={pressure} bar 💨, temp={temp}°C 🌡️, time={final_time}s ⏰, stir_speed={stir_speed} RPM 🌪️")
# === 步骤5: 生成动作序列 ===
debug_print("📍 步骤5: 生成动作序列... 🎬")
action_sequence = []
# 1. 等待稳定
debug_print(" 🔄 动作1: 添加初始等待稳定... ⏳")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 1800
}
"action_kwargs": {"time": 10}
})
debug_print(" ✅ 初始等待动作已添加 ⏳✨")
# 开启旋蒸真空泵、旋转在液体转移后运行time时间
pump_action_sequence.append({
"device_id": "rotavap_controller",
"action_name": "set_pump_time",
"action_kwargs": {
"command": str(time + reactor_volume / flowrate * 3)
}
})
pump_action_sequence.append({
"device_id": "rotavap_controller",
"action_name": "set_pump_time",
"action_kwargs": {
"command": str(time + reactor_volume / flowrate * 3)
}
})
# 2. 执行蒸发
debug_print(f" 🌪️ 动作2: 执行蒸发操作...")
debug_print(f" 🔧 设备: {rotavap_device}")
debug_print(f" 🥽 容器: {target_vessel}")
debug_print(f" 💨 真空度: {pressure} bar")
debug_print(f" 🌡️ 温度: {temp}°C")
debug_print(f" ⏰ 时间: {final_time}s ({final_time/60:.1f}分钟)")
debug_print(f" 🌪️ 旋转速度: {stir_speed} RPM")
# 液体转入旋转蒸发器
pump_action_sequence.append({
"device_id": "",
"action_name": "PumpTransferProtocol",
evaporate_action = {
"device_id": rotavap_device,
"action_name": "evaporate",
"action_kwargs": {
"from_vessel": vessel,
"to_vessel": "rotavap",
"volume": reactor_volume,
"time": reactor_volume / flowrate,
# "transfer_flowrate": transfer_flowrate,
"vessel": target_vessel,
"pressure": pressure,
"temp": temp,
"time": final_time,
"stir_speed": stir_speed,
"solvent": solvent
}
})
}
action_sequence.append(evaporate_action)
debug_print(" ✅ 蒸发动作已添加 🌪️✨")
pump_action_sequence.append({
# 3. 蒸发后等待
debug_print(" 🔄 动作3: 添加蒸发后等待... ⏳")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": time
}
"action_kwargs": {"time": 10}
})
return pump_action_sequence
debug_print(" ✅ 蒸发后等待动作已添加 ⏳✨")
# === 总结 ===
debug_print("🎊" * 20)
debug_print(f"🎉 蒸发协议生成完成! ✨")
debug_print(f"📊 总动作数: {len(action_sequence)} 个 📝")
debug_print(f"🌪️ 旋转蒸发仪: {rotavap_device} 🔧")
debug_print(f"🥽 目标容器: {target_vessel} 🧪")
debug_print(f"⚙️ 蒸发参数: {pressure} bar 💨, {temp}°C 🌡️, {final_time}s ⏰, {stir_speed} RPM 🌪️")
debug_print(f"⏱️ 预计总时间: {(final_time + 20)/60:.1f} 分钟 ⌛")
debug_print("🎊" * 20)
return action_sequence

View File

@@ -1,70 +1,236 @@
from typing import List, Dict, Any
from typing import List, Dict, Any, Optional
import networkx as nx
import logging
from .pump_protocol import generate_pump_protocol_with_rinsing
logger = logging.getLogger(__name__)
def debug_print(message):
"""调试输出"""
print(f"🧪 [FILTER] {message}", flush=True)
logger.info(f"[FILTER] {message}")
def find_filter_device(G: nx.DiGraph) -> str:
"""查找过滤器设备"""
debug_print("🔍 查找过滤器设备... 🌊")
# 查找过滤器设备
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if 'filter' in node_class.lower() or 'filter' in node.lower():
debug_print(f"🎉 找到过滤器设备: {node}")
return node
# 如果没找到,寻找可能的过滤器名称
debug_print("🔎 在预定义名称中搜索过滤器... 📋")
possible_names = ["filter", "filter_1", "virtual_filter", "filtration_unit"]
for name in possible_names:
if name in G.nodes():
debug_print(f"🎉 找到过滤器设备: {name}")
return name
debug_print("😭 未找到过滤器设备 💔")
raise ValueError("未找到过滤器设备")
def validate_vessel(G: nx.DiGraph, vessel: str, vessel_type: str = "容器") -> None:
"""验证容器是否存在"""
debug_print(f"🔍 验证{vessel_type}: '{vessel}' 🧪")
if not vessel:
debug_print(f"{vessel_type}不能为空! 😱")
raise ValueError(f"{vessel_type}不能为空")
if vessel not in G.nodes():
debug_print(f"{vessel_type} '{vessel}' 不存在于系统中! 😞")
raise ValueError(f"{vessel_type} '{vessel}' 不存在于系统中")
debug_print(f"{vessel_type} '{vessel}' 验证通过 🎯")
def generate_filter_protocol(
G: nx.DiGraph,
vessel: str,
filtrate_vessel: str = "",
stir: bool = False,
stir_speed: float = 300.0,
temp: float = 25.0,
continue_heatchill: bool = False,
volume: float = 0.0
**kwargs
) -> List[Dict[str, Any]]:
"""
生成过滤操作的协议序列
Args:
G: 有向图,节点为设备和容器
vessel: 过滤容器
filtrate_vessel: 滤液容器(可选)
stir: 是否搅拌
stir_speed: 搅拌速度(可选)
temp: 温度(可选,摄氏度)
continue_heatchill: 是否继续加热冷却
volume: 过滤体积(可选)
G: 设备图
vessel: 过滤容器名称(必需)- 包含需要过滤的混合物
filtrate_vessel: 滤液容器名称(可选)- 如果提供则收集滤液
**kwargs: 其他参数(兼容性)
Returns:
List[Dict[str, Any]]: 过滤操作的动作序列
Raises:
ValueError: 当找不到过滤设备时抛出异常
Examples:
filter_protocol = generate_filter_protocol(G, "reactor", "filtrate_vessel", stir=True, volume=100.0)
"""
debug_print("🌊" * 20)
debug_print("🚀 开始生成过滤协议 ✨")
debug_print(f"📝 输入参数:")
debug_print(f" 🥽 vessel: {vessel}")
debug_print(f" 🧪 filtrate_vessel: {filtrate_vessel}")
debug_print(f" ⚙️ 其他参数: {kwargs}")
debug_print("🌊" * 20)
action_sequence = []
# 查找过滤设备
filter_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_filter']
# === 参数验证 ===
debug_print("📍 步骤1: 参数验证... 🔧")
if not filter_nodes:
raise ValueError("没有找到可用的过滤设备")
# 验证必需参数
debug_print(" 🔍 验证必需参数...")
validate_vessel(G, vessel, "过滤容器")
debug_print(" ✅ 必需参数验证完成 🎯")
# 使用第一个可用的过滤器
filter_id = filter_nodes[0]
# 验证可选参数
debug_print(" 🔍 验证可选参数...")
if filtrate_vessel:
validate_vessel(G, filtrate_vessel, "滤液容器")
debug_print(" 🌊 模式: 过滤并收集滤液 💧")
else:
debug_print(" 🧱 模式: 过滤并收集固体 🔬")
debug_print(" ✅ 可选参数验证完成 🎯")
# 验证容器是否存在
if vessel not in G.nodes():
raise ValueError(f"过滤容器 {vessel} 不存在于图中")
# === 查找设备 ===
debug_print("📍 步骤2: 查找设备... 🔍")
if filtrate_vessel and filtrate_vessel not in G.nodes():
raise ValueError(f"滤液容器 {filtrate_vessel} 不存在于图中")
try:
debug_print(" 🔎 搜索过滤器设备...")
filter_device = find_filter_device(G)
debug_print(f" 🎉 使用过滤器设备: {filter_device} 🌊✨")
except Exception as e:
debug_print(f" ❌ 设备查找失败: {str(e)} 😭")
raise ValueError(f"设备查找失败: {str(e)}")
# 执行过滤操作
# === 转移到过滤器(如果需要)===
debug_print("📍 步骤3: 转移到过滤器... 🚚")
if vessel != filter_device:
debug_print(f" 🚛 需要转移: {vessel}{filter_device} 📦")
try:
debug_print(" 🔄 开始执行转移操作...")
# 使用pump protocol转移液体到过滤器
transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=vessel,
to_vessel=filter_device,
volume=0.0, # 转移所有液体
amount="",
time=0.0,
viscous=False,
rinsing_solvent="",
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=2.0,
transfer_flowrate=2.0
)
if transfer_actions:
action_sequence.extend(transfer_actions)
debug_print(f" ✅ 添加了 {len(transfer_actions)} 个转移动作 🚚✨")
else:
debug_print(" ⚠️ 转移协议返回空序列 🤔")
except Exception as e:
debug_print(f" ❌ 转移失败: {str(e)} 😞")
debug_print(" 🔄 继续执行,可能是直接连接的过滤器 🤞")
else:
debug_print(" ✅ 过滤容器就是过滤器,无需转移 🎯")
# === 执行过滤操作 ===
debug_print("📍 步骤4: 执行过滤操作... 🌊")
# 构建过滤动作参数
debug_print(" ⚙️ 构建过滤参数...")
filter_kwargs = {
"vessel": filter_device, # 过滤器设备
"filtrate_vessel": filtrate_vessel, # 滤液容器(可能为空)
"stir": kwargs.get("stir", False),
"stir_speed": kwargs.get("stir_speed", 0.0),
"temp": kwargs.get("temp", 25.0),
"continue_heatchill": kwargs.get("continue_heatchill", False),
"volume": kwargs.get("volume", 0.0) # 0表示过滤所有
}
debug_print(f" 📋 过滤参数: {filter_kwargs}")
debug_print(" 🌊 开始过滤操作...")
# 过滤动作
filter_action = {
"device_id": filter_device,
"action_name": "filter",
"action_kwargs": filter_kwargs
}
action_sequence.append(filter_action)
debug_print(" ✅ 过滤动作已添加 🌊✨")
# 过滤后等待
debug_print(" ⏳ 添加过滤后等待...")
action_sequence.append({
"device_id": filter_id,
"action_name": "filter_sample",
"action_kwargs": {
"vessel": vessel,
"filtrate_vessel": filtrate_vessel,
"stir": stir,
"stir_speed": stir_speed,
"temp": temp,
"continue_heatchill": continue_heatchill,
"volume": volume
}
"action_name": "wait",
"action_kwargs": {"time": 10.0}
})
debug_print(" ✅ 过滤后等待动作已添加 ⏰✨")
return action_sequence
# === 收集滤液(如果需要)===
debug_print("📍 步骤5: 收集滤液... 💧")
if filtrate_vessel:
debug_print(f" 🧪 收集滤液: {filter_device}{filtrate_vessel} 💧")
try:
debug_print(" 🔄 开始执行收集操作...")
# 使用pump protocol收集滤液
collect_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=filter_device,
to_vessel=filtrate_vessel,
volume=0.0, # 收集所有滤液
amount="",
time=0.0,
viscous=False,
rinsing_solvent="",
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=2.0,
transfer_flowrate=2.0
)
if collect_actions:
action_sequence.extend(collect_actions)
debug_print(f" ✅ 添加了 {len(collect_actions)} 个收集动作 🧪✨")
else:
debug_print(" ⚠️ 收集协议返回空序列 🤔")
except Exception as e:
debug_print(f" ❌ 收集滤液失败: {str(e)} 😞")
debug_print(" 🔄 继续执行,可能滤液直接流入指定容器 🤞")
else:
debug_print(" 🧱 未指定滤液容器,固体保留在过滤器中 🔬")
# === 最终等待 ===
debug_print("📍 步骤6: 最终等待... ⏰")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 5.0}
})
debug_print(" ✅ 最终等待动作已添加 ⏰✨")
# === 总结 ===
debug_print("🎊" * 20)
debug_print(f"🎉 过滤协议生成完成! ✨")
debug_print(f"📊 总动作数: {len(action_sequence)} 个 📝")
debug_print(f"🥽 过滤容器: {vessel} 🧪")
debug_print(f"🌊 过滤器设备: {filter_device} 🔧")
debug_print(f"💧 滤液容器: {filtrate_vessel or '无(保留固体)'} 🧱")
debug_print(f"⏱️ 预计总时间: {(len(action_sequence) * 5):.0f} 秒 ⌛")
debug_print("🎊" * 20)
return action_sequence

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@@ -1,5 +1,72 @@
from typing import List, Dict, Any
import networkx as nx
from .pump_protocol import generate_pump_protocol
def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
"""获取容器中的液体体积"""
if vessel not in G.nodes():
return 0.0
vessel_data = G.nodes[vessel].get('data', {})
liquids = vessel_data.get('liquid', [])
total_volume = 0.0
for liquid in liquids:
if isinstance(liquid, dict) and 'liquid_volume' in liquid:
total_volume += liquid['liquid_volume']
return total_volume
def find_filter_through_vessel(G: nx.DiGraph, filter_through: str) -> str:
"""查找过滤介质容器"""
# 直接使用 filter_through 参数作为容器名称
if filter_through in G.nodes():
return filter_through
# 尝试常见的过滤介质容器命名
possible_names = [
f"filter_{filter_through}",
f"{filter_through}_filter",
f"column_{filter_through}",
f"{filter_through}_column",
"filter_through_vessel",
"column_vessel",
"chromatography_column",
"filter_column"
]
for vessel_name in possible_names:
if vessel_name in G.nodes():
return vessel_name
raise ValueError(f"未找到过滤介质容器 '{filter_through}'。尝试了以下名称: {[filter_through] + possible_names}")
def find_eluting_solvent_vessel(G: nx.DiGraph, eluting_solvent: str) -> str:
"""查找洗脱溶剂容器"""
if not eluting_solvent:
return ""
# 按照命名规则查找溶剂瓶
solvent_vessel_id = f"flask_{eluting_solvent}"
if solvent_vessel_id in G.nodes():
return solvent_vessel_id
# 如果直接匹配失败,尝试模糊匹配
for node in G.nodes():
if node.startswith('flask_') and eluting_solvent.lower() in node.lower():
return node
# 如果还是找不到,列出所有可用的溶剂瓶
available_flasks = [node for node in G.nodes()
if node.startswith('flask_')
and G.nodes[node].get('type') == 'container']
raise ValueError(f"找不到洗脱溶剂 '{eluting_solvent}' 对应的溶剂瓶。可用溶剂瓶: {available_flasks}")
def generate_filter_through_protocol(
G: nx.DiGraph,
@@ -12,10 +79,15 @@ def generate_filter_through_protocol(
residence_time: float = 0.0
) -> List[Dict[str, Any]]:
"""
生成通过过滤介质过滤的协议序列
生成通过过滤介质过滤的协议序列,复用 pump_protocol 的成熟算法
过滤流程:
1. 液体转移:将样品从源容器转移到过滤介质
2. 重力过滤:液体通过过滤介质自动流到目标容器
3. 洗脱操作:将洗脱溶剂通过过滤介质洗脱目标物质
Args:
G: 有向图,节点为设备和容器
G: 有向图,节点为设备和容器,边为流体管道
from_vessel: 源容器的名称,即物质起始所在的容器
to_vessel: 目标容器的名称,物质过滤后要到达的容器
filter_through: 过滤时所通过的介质,如滤纸、柱子等
@@ -28,123 +100,288 @@ def generate_filter_through_protocol(
List[Dict[str, Any]]: 过滤操作的动作序列
Raises:
ValueError: 当找不到必要的设备时抛出异常
ValueError: 当找不到必要的设备或容器
Examples:
filter_through_protocol = generate_filter_through_protocol(
G, "reactor", "collection_flask", "celite", "ethanol", 50.0, 2, 60.0
filter_through_actions = generate_filter_through_protocol(
G, "reaction_mixture", "collection_bottle_1", "celite", "ethanol", 20.0, 2, 30.0
)
"""
action_sequence = []
# 验证容器是否存在
print(f"FILTER_THROUGH: 开始生成通过过滤协议")
print(f" - 源容器: {from_vessel}")
print(f" - 目标容器: {to_vessel}")
print(f" - 过滤介质: {filter_through}")
print(f" - 洗脱溶剂: {eluting_solvent}")
print(f" - 洗脱体积: {eluting_volume} mL" if eluting_volume > 0 else " - 洗脱体积: 无")
print(f" - 洗脱重复次数: {eluting_repeats}")
print(f" - 停留时间: {residence_time}s" if residence_time > 0 else " - 停留时间: 无")
# 验证源容器和目标容器存在
if from_vessel not in G.nodes():
raise ValueError(f"源容器 {from_vessel} 不存在于")
raise ValueError(f"源容器 '{from_vessel}' 不存在于系统")
if to_vessel not in G.nodes():
raise ValueError(f"目标容器 {to_vessel} 不存在于")
raise ValueError(f"目标容器 '{to_vessel}' 不存在于系统")
# 查找转移泵设备(用于液体转移)
pump_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_transfer_pump']
# 获取源容器中的液体体积
source_volume = get_vessel_liquid_volume(G, from_vessel)
print(f"FILTER_THROUGH: 源容器 {from_vessel} 中有 {source_volume} mL 液体")
if not pump_nodes:
raise ValueError("没有找到可用的转移泵设备")
# 查找过滤介质容器
try:
filter_through_vessel = find_filter_through_vessel(G, filter_through)
print(f"FILTER_THROUGH: 找到过滤介质容器: {filter_through_vessel}")
except ValueError as e:
raise ValueError(f"无法找到过滤介质容器: {str(e)}")
pump_id = pump_nodes[0]
# 查找洗脱溶剂容器(如果需要)
eluting_vessel = ""
if eluting_solvent and eluting_volume > 0 and eluting_repeats > 0:
try:
eluting_vessel = find_eluting_solvent_vessel(G, eluting_solvent)
print(f"FILTER_THROUGH: 找到洗脱溶剂容器: {eluting_vessel}")
except ValueError as e:
raise ValueError(f"无法找到洗脱溶剂容器: {str(e)}")
# 查找过滤设备(可选,如果有专门的过滤设备)
filter_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_filter']
# === 第一步:将样品从源容器转移到过滤介质 ===
transfer_volume = source_volume if source_volume > 0 else 100.0 # 默认100mL
print(f"FILTER_THROUGH: 将 {transfer_volume} mL 样品从 {from_vessel} 转移到 {filter_through_vessel}")
filter_id = filter_nodes[0] if filter_nodes else None
try:
# 使用成熟的 pump_protocol 算法进行液体转移
sample_transfer_actions = generate_pump_protocol(
G=G,
from_vessel=from_vessel,
to_vessel=filter_through_vessel,
volume=transfer_volume,
flowrate=0.8, # 较慢的流速,避免冲击过滤介质
transfer_flowrate=1.2
)
action_sequence.extend(sample_transfer_actions)
except Exception as e:
raise ValueError(f"无法将样品转移到过滤介质: {str(e)}")
# 查找洗脱溶剂容器(如果需要洗脱)
eluting_vessel = None
if eluting_solvent and eluting_volume > 0:
eluting_vessel = f"flask_{eluting_solvent}"
if eluting_vessel not in G.nodes():
# 查找可用的溶剂容器
available_vessels = [node for node in G.nodes()
if node.startswith('flask_') and
G.nodes[node].get('type') == 'container']
if available_vessels:
eluting_vessel = available_vessels[0]
else:
raise ValueError(f"没有找到洗脱溶剂容器 {eluting_solvent}")
# 步骤1将样品从源容器转移到过滤装置模拟通过过滤介质
# 这里我们将过滤过程分解为多个转移步骤来模拟通过介质的过程
# 首先转移样品(模拟样品通过过滤介质)
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": from_vessel,
"to_vessel": to_vessel,
"volume": 0.0, # 转移所有液体,体积由系统确定
"amount": f"通过 {filter_through} 过滤",
"time": residence_time if residence_time > 0 else 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": True # 通过过滤介质可能涉及固体分离
}
})
# 步骤2如果有专门的过滤设备使用过滤设备处理
if filter_id:
# === 第二步:等待样品通过过滤介质(停留时间) ===
if residence_time > 0:
print(f"FILTER_THROUGH: 等待样品在过滤介质中停留 {residence_time}s")
action_sequence.append({
"device_id": filter_id,
"action_name": "filter_sample",
"action_kwargs": {
"vessel": to_vessel,
"filtrate_vessel": to_vessel,
"stir": False,
"stir_speed": 0.0,
"temp": 25.0,
"continue_heatchill": False,
"volume": 0.0
}
"action_name": "wait",
"action_kwargs": {"time": residence_time}
})
else:
# 即使没有指定停留时间,也等待一段时间让液体通过
default_wait_time = max(10, transfer_volume / 10) # 根据体积估算等待时间
print(f"FILTER_THROUGH: 等待样品通过过滤介质 {default_wait_time}s")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": default_wait_time}
})
# 步骤3:洗脱操作(如果指定了洗脱溶剂和重复次数)
# === 第三步:洗脱操作(如果指定了洗脱参数) ===
if eluting_solvent and eluting_volume > 0 and eluting_repeats > 0 and eluting_vessel:
for repeat in range(eluting_repeats):
# 添加洗脱溶剂
print(f"FILTER_THROUGH: 开始洗脱操作 - {eluting_repeats} 次,每次 {eluting_volume} mL {eluting_solvent}")
for repeat_idx in range(eluting_repeats):
print(f"FILTER_THROUGH: 第 {repeat_idx + 1}/{eluting_repeats} 次洗脱")
try:
# 将洗脱溶剂转移到过滤介质
eluting_transfer_actions = generate_pump_protocol(
G=G,
from_vessel=eluting_vessel,
to_vessel=filter_through_vessel,
volume=eluting_volume,
flowrate=0.6, # 洗脱用更慢的流速
transfer_flowrate=1.0
)
action_sequence.extend(eluting_transfer_actions)
except Exception as e:
raise ValueError(f"{repeat_idx + 1} 次洗脱转移失败: {str(e)}")
# 等待洗脱溶剂通过过滤介质
eluting_wait_time = max(30, eluting_volume / 5) # 根据洗脱体积估算等待时间
print(f"FILTER_THROUGH: 等待第 {repeat_idx + 1} 次洗脱液通过 {eluting_wait_time}s")
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": eluting_vessel,
"to_vessel": to_vessel,
"volume": eluting_volume,
"amount": f"洗脱溶剂 {eluting_solvent} - 第 {repeat + 1}",
"time": 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
}
"action_name": "wait",
"action_kwargs": {"time": eluting_wait_time}
})
# 如果有过滤设备,再次过滤洗脱液
if filter_id:
# 洗脱间隔等待
if repeat_idx < eluting_repeats - 1: # 不是最后一次洗脱
action_sequence.append({
"device_id": filter_id,
"action_name": "filter_sample",
"action_kwargs": {
"vessel": to_vessel,
"filtrate_vessel": to_vessel,
"stir": False,
"stir_speed": 0.0,
"temp": 25.0,
"continue_heatchill": False,
"volume": eluting_volume
}
"action_name": "wait",
"action_kwargs": {"time": 10}
})
return action_sequence
# === 第四步:最终等待,确保所有液体完全通过 ===
print(f"FILTER_THROUGH: 最终等待,确保所有液体完全通过过滤介质")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 20}
})
print(f"FILTER_THROUGH: 生成了 {len(action_sequence)} 个动作")
print(f"FILTER_THROUGH: 通过过滤协议生成完成")
print(f"FILTER_THROUGH: 样品从 {from_vessel} 通过 {filter_through} 到达 {to_vessel}")
if eluting_repeats > 0:
total_eluting_volume = eluting_volume * eluting_repeats
print(f"FILTER_THROUGH: 总洗脱体积: {total_eluting_volume} mL {eluting_solvent}")
return action_sequence
# 便捷函数:常用过滤方案
def generate_gravity_column_protocol(
G: nx.DiGraph,
from_vessel: str,
to_vessel: str,
column_material: str = "silica_gel"
) -> List[Dict[str, Any]]:
"""重力柱层析:简单重力过滤,无洗脱"""
return generate_filter_through_protocol(G, from_vessel, to_vessel, column_material, "", 0.0, 0, 0.0)
def generate_celite_filter_protocol(
G: nx.DiGraph,
from_vessel: str,
to_vessel: str,
wash_solvent: str = "ethanol",
wash_volume: float = 20.0
) -> List[Dict[str, Any]]:
"""硅藻土过滤:用于去除固体杂质"""
return generate_filter_through_protocol(G, from_vessel, to_vessel, "celite", wash_solvent, wash_volume, 1, 30.0)
def generate_column_chromatography_protocol(
G: nx.DiGraph,
from_vessel: str,
to_vessel: str,
column_material: str = "silica_gel",
eluting_solvent: str = "ethyl_acetate",
eluting_volume: float = 30.0,
eluting_repeats: int = 3
) -> List[Dict[str, Any]]:
"""柱层析:多次洗脱分离"""
return generate_filter_through_protocol(
G, from_vessel, to_vessel, column_material, eluting_solvent, eluting_volume, eluting_repeats, 60.0
)
def generate_solid_phase_extraction_protocol(
G: nx.DiGraph,
from_vessel: str,
to_vessel: str,
spe_cartridge: str = "C18",
eluting_solvent: str = "methanol",
eluting_volume: float = 15.0,
eluting_repeats: int = 2
) -> List[Dict[str, Any]]:
"""固相萃取C18柱或其他SPE柱"""
return generate_filter_through_protocol(
G, from_vessel, to_vessel, spe_cartridge, eluting_solvent, eluting_volume, eluting_repeats, 120.0
)
def generate_resin_filter_protocol(
G: nx.DiGraph,
from_vessel: str,
to_vessel: str,
resin_type: str = "ion_exchange",
regeneration_solvent: str = "NaCl_solution",
regeneration_volume: float = 25.0
) -> List[Dict[str, Any]]:
"""树脂过滤:离子交换树脂或其他功能树脂"""
return generate_filter_through_protocol(
G, from_vessel, to_vessel, resin_type, regeneration_solvent, regeneration_volume, 1, 180.0
)
def generate_multi_step_purification_protocol(
G: nx.DiGraph,
from_vessel: str,
to_vessel: str,
filter_steps: List[Dict[str, Any]]
) -> List[Dict[str, Any]]:
"""
多步骤纯化:连续多个过滤介质
Args:
G: 网络图
from_vessel: 源容器
to_vessel: 最终目标容器
filter_steps: 过滤步骤列表,每个元素包含过滤参数
Returns:
List[Dict[str, Any]]: 完整的动作序列
Example:
filter_steps = [
{
"to_vessel": "intermediate_vessel_1",
"filter_through": "celite",
"eluting_solvent": "",
"eluting_volume": 0.0,
"eluting_repeats": 0,
"residence_time": 30.0
},
{
"from_vessel": "intermediate_vessel_1",
"to_vessel": "final_vessel",
"filter_through": "silica_gel",
"eluting_solvent": "ethyl_acetate",
"eluting_volume": 20.0,
"eluting_repeats": 2,
"residence_time": 60.0
}
]
"""
action_sequence = []
current_from_vessel = from_vessel
for i, step in enumerate(filter_steps):
print(f"FILTER_THROUGH: 处理第 {i+1}/{len(filter_steps)} 个过滤步骤")
# 使用步骤中指定的参数,或使用默认值
step_from_vessel = step.get('from_vessel', current_from_vessel)
step_to_vessel = step.get('to_vessel', to_vessel if i == len(filter_steps) - 1 else f"intermediate_vessel_{i+1}")
# 生成单个过滤步骤的协议
step_actions = generate_filter_through_protocol(
G=G,
from_vessel=step_from_vessel,
to_vessel=step_to_vessel,
filter_through=step.get('filter_through', 'silica_gel'),
eluting_solvent=step.get('eluting_solvent', ''),
eluting_volume=step.get('eluting_volume', 0.0),
eluting_repeats=step.get('eluting_repeats', 0),
residence_time=step.get('residence_time', 0.0)
)
action_sequence.extend(step_actions)
# 更新下一步的源容器
current_from_vessel = step_to_vessel
# 在步骤之间加入等待时间
if i < len(filter_steps) - 1: # 不是最后一个步骤
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 15}
})
print(f"FILTER_THROUGH: 多步骤纯化协议生成完成,共 {len(action_sequence)} 个动作")
return action_sequence
# 测试函数
def test_filter_through_protocol():
"""测试通过过滤协议的示例"""
print("=== FILTER THROUGH PROTOCOL 测试 ===")
print("测试完成")
if __name__ == "__main__":
test_filter_through_protocol()

View File

@@ -1,117 +1,376 @@
from typing import List, Dict, Any
from typing import List, Dict, Any, Union
import networkx as nx
import logging
import re
logger = logging.getLogger(__name__)
def debug_print(message):
"""调试输出"""
print(f"🌡️ [HEATCHILL] {message}", flush=True)
logger.info(f"[HEATCHILL] {message}")
def parse_time_input(time_input: Union[str, float, int]) -> float:
"""
解析时间输入(统一函数)
Args:
time_input: 时间输入(如 "30 min", "1 h", "300", "?", 60.0
Returns:
float: 时间(秒)
"""
if not time_input:
return 300.0
# 🔢 处理数值输入
if isinstance(time_input, (int, float)):
result = float(time_input)
debug_print(f"⏰ 数值时间: {time_input}{result}s")
return result
# 📝 处理字符串输入
time_str = str(time_input).lower().strip()
debug_print(f"🔍 解析时间: '{time_str}'")
# ❓ 特殊值处理
special_times = {
'?': 300.0, 'unknown': 300.0, 'tbd': 300.0,
'overnight': 43200.0, 'several hours': 10800.0,
'few hours': 7200.0, 'long time': 3600.0, 'short time': 300.0
}
if time_str in special_times:
result = special_times[time_str]
debug_print(f"🎯 特殊时间: '{time_str}'{result}s ({result/60:.1f}分钟)")
return result
# 🔢 纯数字处理
try:
result = float(time_str)
debug_print(f"⏰ 纯数字: {time_str}{result}s")
return result
except ValueError:
pass
# 📐 正则表达式解析
pattern = r'(\d+\.?\d*)\s*([a-z]*)'
match = re.match(pattern, time_str)
if not match:
debug_print(f"⚠️ 无法解析时间: '{time_str}',使用默认值: 300s")
return 300.0
value = float(match.group(1))
unit = match.group(2) or 's'
# 📏 单位转换
unit_multipliers = {
's': 1.0, 'sec': 1.0, 'second': 1.0, 'seconds': 1.0,
'm': 60.0, 'min': 60.0, 'mins': 60.0, 'minute': 60.0, 'minutes': 60.0,
'h': 3600.0, 'hr': 3600.0, 'hrs': 3600.0, 'hour': 3600.0, 'hours': 3600.0,
'd': 86400.0, 'day': 86400.0, 'days': 86400.0
}
multiplier = unit_multipliers.get(unit, 1.0)
result = value * multiplier
debug_print(f"✅ 时间解析: '{time_str}'{value} {unit}{result}s ({result/60:.1f}分钟)")
return result
def parse_temp_input(temp_input: Union[str, float], default_temp: float = 25.0) -> float:
"""
解析温度输入(统一函数)
Args:
temp_input: 温度输入
default_temp: 默认温度
Returns:
float: 温度°C
"""
if not temp_input:
return default_temp
# 🔢 数值输入
if isinstance(temp_input, (int, float)):
result = float(temp_input)
debug_print(f"🌡️ 数值温度: {temp_input}{result}°C")
return result
# 📝 字符串输入
temp_str = str(temp_input).lower().strip()
debug_print(f"🔍 解析温度: '{temp_str}'")
# 🎯 特殊温度
special_temps = {
"room temperature": 25.0, "reflux": 78.0, "ice bath": 0.0,
"boiling": 100.0, "hot": 60.0, "warm": 40.0, "cold": 10.0
}
if temp_str in special_temps:
result = special_temps[temp_str]
debug_print(f"🎯 特殊温度: '{temp_str}'{result}°C")
return result
# 📐 正则解析(如 "256 °C"
temp_pattern = r'(\d+(?:\.\d+)?)\s*°?[cf]?'
match = re.search(temp_pattern, temp_str)
if match:
result = float(match.group(1))
debug_print(f"✅ 温度解析: '{temp_str}'{result}°C")
return result
debug_print(f"⚠️ 无法解析温度: '{temp_str}',使用默认值: {default_temp}°C")
return default_temp
def find_connected_heatchill(G: nx.DiGraph, vessel: str) -> str:
"""查找与指定容器相连的加热/冷却设备"""
debug_print(f"🔍 查找加热设备,目标容器: {vessel}")
# 🔧 查找所有加热设备
heatchill_nodes = []
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if 'heatchill' in node_class.lower() or 'virtual_heatchill' in node_class:
heatchill_nodes.append(node)
debug_print(f"🎉 找到加热设备: {node}")
# 🔗 检查连接
if vessel and heatchill_nodes:
for heatchill in heatchill_nodes:
if G.has_edge(heatchill, vessel) or G.has_edge(vessel, heatchill):
debug_print(f"✅ 加热设备 '{heatchill}' 与容器 '{vessel}' 相连")
return heatchill
# 🎯 使用第一个可用设备
if heatchill_nodes:
selected = heatchill_nodes[0]
debug_print(f"🔧 使用第一个加热设备: {selected}")
return selected
# 🆘 默认设备
debug_print("⚠️ 未找到加热设备,使用默认设备")
return "heatchill_1"
def validate_and_fix_params(temp: float, time: float, stir_speed: float) -> tuple:
"""验证和修正参数"""
# 🌡️ 温度范围验证
if temp < -50.0 or temp > 300.0:
debug_print(f"⚠️ 温度 {temp}°C 超出范围,修正为 25°C")
temp = 25.0
else:
debug_print(f"✅ 温度 {temp}°C 在正常范围内")
# ⏰ 时间验证
if time < 0:
debug_print(f"⚠️ 时间 {time}s 无效,修正为 300s")
time = 300.0
else:
debug_print(f"✅ 时间 {time}s ({time/60:.1f}分钟) 有效")
# 🌪️ 搅拌速度验证
if stir_speed < 0 or stir_speed > 1500.0:
debug_print(f"⚠️ 搅拌速度 {stir_speed} RPM 超出范围,修正为 300 RPM")
stir_speed = 300.0
else:
debug_print(f"✅ 搅拌速度 {stir_speed} RPM 在正常范围内")
return temp, time, stir_speed
def generate_heat_chill_protocol(
G: nx.DiGraph,
vessel: str,
temp: float,
time: float,
stir: bool,
stir_speed: float,
purpose: str
temp: float = 25.0,
time: Union[str, float] = "300",
temp_spec: str = "",
time_spec: str = "",
pressure: str = "",
reflux_solvent: str = "",
stir: bool = False,
stir_speed: float = 300.0,
purpose: str = "",
**kwargs
) -> List[Dict[str, Any]]:
"""
生成加热/冷却操作的协议序列 - 严格按照 HeatChill.action
生成加热/冷却操作的协议序列
"""
action_sequence = []
# 查找加热/冷却设备
heatchill_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_heatchill']
debug_print("🌡️" * 20)
debug_print("🚀 开始生成加热冷却协议 ✨")
debug_print(f"📝 输入参数:")
debug_print(f" 🥽 vessel: {vessel}")
debug_print(f" 🌡️ temp: {temp}°C")
debug_print(f" ⏰ time: {time}")
debug_print(f" 🎯 temp_spec: {temp_spec}")
debug_print(f" ⏱️ time_spec: {time_spec}")
debug_print(f" 🌪️ stir: {stir} ({stir_speed} RPM)")
debug_print("🌡️" * 20)
if not heatchill_nodes:
raise ValueError("没有找到可用的加热/冷却设备")
heatchill_id = heatchill_nodes[0]
# 📋 参数验证
debug_print("📍 步骤1: 参数验证... 🔧")
if not vessel:
debug_print("❌ vessel 参数不能为空! 😱")
raise ValueError("vessel 参数不能为空")
if vessel not in G.nodes():
raise ValueError(f"容器 {vessel} 不存在于图中")
debug_print(f"容器 '{vessel}' 不存在于系统中! 😞")
raise ValueError(f"容器 '{vessel}' 不存在于系统中")
action_sequence.append({
debug_print("✅ 基础参数验证通过 🎯")
# 🔄 参数解析
debug_print("📍 步骤2: 参数解析... ⚡")
#温度解析:优先使用 temp_spec
final_temp = parse_temp_input(temp_spec, temp) if temp_spec else temp
# 时间解析:优先使用 time_spec
final_time = parse_time_input(time_spec) if time_spec else parse_time_input(time)
# 参数修正
final_temp, final_time, stir_speed = validate_and_fix_params(final_temp, final_time, stir_speed)
debug_print(f"🎯 最终参数: temp={final_temp}°C, time={final_time}s, stir_speed={stir_speed} RPM")
# 🔍 查找设备
debug_print("📍 步骤3: 查找加热设备... 🔍")
try:
heatchill_id = find_connected_heatchill(G, vessel)
debug_print(f"🎉 使用加热设备: {heatchill_id}")
except Exception as e:
debug_print(f"❌ 设备查找失败: {str(e)} 😭")
raise ValueError(f"无法找到加热设备: {str(e)}")
# 🚀 生成动作
debug_print("📍 步骤4: 生成加热动作... 🔥")
# 🕐 模拟运行时间优化
debug_print(" ⏱️ 检查模拟运行时间限制...")
original_time = final_time
simulation_time_limit = 100.0 # 模拟运行时间限制100秒
if final_time > simulation_time_limit:
final_time = simulation_time_limit
debug_print(f" 🎮 模拟运行优化: {original_time}s → {final_time}s (限制为{simulation_time_limit}s) ⚡")
debug_print(f" 📊 时间缩短: {original_time/60:.1f}分钟 → {final_time/60:.1f}分钟 🚀")
else:
debug_print(f" ✅ 时间在限制内: {final_time}s ({final_time/60:.1f}分钟) 保持不变 🎯")
action_sequence = []
heatchill_action = {
"device_id": heatchill_id,
"action_name": "heat_chill",
"action_kwargs": {
"vessel": vessel,
"temp": temp,
"time": time,
"stir": stir,
"stir_speed": stir_speed,
"purpose": purpose
"temp": float(final_temp),
"time": float(final_time),
"stir": bool(stir),
"stir_speed": float(stir_speed),
"purpose": str(purpose or f"加热到 {final_temp}°C") + (f" (模拟时间: {final_time}s)" if original_time != final_time else "")
}
})
}
action_sequence.append(heatchill_action)
debug_print("✅ 加热动作已添加 🔥✨")
# 显示时间调整信息
if original_time != final_time:
debug_print(f" 🎭 模拟优化说明: 原计划 {original_time/60:.1f}分钟,实际模拟 {final_time/60:.1f}分钟 ⚡")
# 🎊 总结
debug_print("🎊" * 20)
debug_print(f"🎉 加热冷却协议生成完成! ✨")
debug_print(f"📊 总动作数: {len(action_sequence)}")
debug_print(f"🥽 加热容器: {vessel}")
debug_print(f"🌡️ 目标温度: {final_temp}°C")
debug_print(f"⏰ 加热时间: {final_time}s ({final_time/60:.1f}分钟)")
debug_print("🎊" * 20)
return action_sequence
def generate_heat_chill_to_temp_protocol(
G: nx.DiGraph,
vessel: str,
temp: float = 25.0,
time: Union[str, float] = 100.0,
**kwargs
) -> List[Dict[str, Any]]:
"""生成加热到指定温度的协议(简化版)"""
debug_print(f"🌡️ 生成加热到温度协议: {vessel}{temp}°C")
return generate_heat_chill_protocol(G, vessel, temp, time, **kwargs)
def generate_heat_chill_start_protocol(
G: nx.DiGraph,
vessel: str,
temp: float,
purpose: str
temp: float = 25.0,
purpose: str = "",
**kwargs
) -> List[Dict[str, Any]]:
"""
生成开始加热/冷却操作的协议序列 - 严格按照 HeatChillStart.action
"""
action_sequence = []
"""生成开始加热操作的协议序列"""
heatchill_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_heatchill']
debug_print("🔥 开始生成启动加热协议 ✨")
debug_print(f"🥽 vessel: {vessel}, 🌡️ temp: {temp}°C")
if not heatchill_nodes:
raise ValueError("没有找到可用的加热/冷却设备")
# 基础验证
if not vessel or vessel not in G.nodes():
debug_print("❌ 容器验证失败!")
raise ValueError("vessel 参数无效")
heatchill_id = heatchill_nodes[0]
# 查找设备
heatchill_id = find_connected_heatchill(G, vessel)
if vessel not in G.nodes():
raise ValueError(f"容器 {vessel} 不存在于图中")
action_sequence.append({
# 生成动作
action_sequence = [{
"device_id": heatchill_id,
"action_name": "heat_chill_start",
"action_kwargs": {
"vessel": vessel,
"temp": temp,
"purpose": purpose
"purpose": purpose or f"开始加热到 {temp}°C"
}
})
}]
debug_print(f"✅ 启动加热协议生成完成 🎯")
return action_sequence
def generate_heat_chill_stop_protocol(
G: nx.DiGraph,
vessel: str
vessel: str,
**kwargs
) -> List[Dict[str, Any]]:
"""
生成停止加热/冷却操作的协议序列
"""生成停止加热操作的协议序列"""
Args:
G: 有向图,节点为设备和容器
vessel: 容器名称
debug_print("🛑 开始生成停止加热协议 ✨")
debug_print(f"🥽 vessel: {vessel}")
Returns:
List[Dict[str, Any]]: 停止加热/冷却操作的动作序列
"""
action_sequence = []
# 基础验证
if not vessel or vessel not in G.nodes():
debug_print("❌ 容器验证失败!")
raise ValueError("vessel 参数无效")
# 查找加热/冷却设备
heatchill_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_heatchill']
# 查找设备
heatchill_id = find_connected_heatchill(G, vessel)
if not heatchill_nodes:
raise ValueError("没有找到可用的加热/冷却设备")
heatchill_id = heatchill_nodes[0]
if vessel not in G.nodes():
raise ValueError(f"容器 {vessel} 不存在于图中")
action_sequence.append({
# 生成动作
action_sequence = [{
"device_id": heatchill_id,
"action_name": "heat_chill_stop",
"action_kwargs": {
"vessel": vessel
}
})
}]
return action_sequence
debug_print(f"✅ 停止加热协议生成完成 🎯")
return action_sequence
# 测试函数
def test_heatchill_protocol():
"""测试加热协议"""
debug_print("🧪 === HEATCHILL PROTOCOL 测试 === ✨")
debug_print("✅ 测试完成 🎉")
if __name__ == "__main__":
test_heatchill_protocol()

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import networkx as nx
from typing import List, Dict, Any, Optional
def parse_temperature(temp_str: str) -> float:
"""
解析温度字符串,支持多种格式
Args:
temp_str: 温度字符串(如 "45 °C", "45°C", "45"
Returns:
float: 温度值(摄氏度)
"""
try:
# 移除常见的温度单位和符号
temp_clean = temp_str.replace("°C", "").replace("°", "").replace("C", "").strip()
return float(temp_clean)
except ValueError:
print(f"HYDROGENATE: 无法解析温度 '{temp_str}',使用默认温度 25°C")
return 25.0
def parse_time(time_str: str) -> float:
"""
解析时间字符串,支持多种格式
Args:
time_str: 时间字符串(如 "2 h", "120 min", "7200 s"
Returns:
float: 时间值(秒)
"""
try:
time_clean = time_str.lower().strip()
# 处理小时
if "h" in time_clean:
hours = float(time_clean.replace("h", "").strip())
return hours * 3600.0
# 处理分钟
if "min" in time_clean:
minutes = float(time_clean.replace("min", "").strip())
return minutes * 60.0
# 处理秒
if "s" in time_clean:
seconds = float(time_clean.replace("s", "").strip())
return seconds
# 默认按小时处理
return float(time_clean) * 3600.0
except ValueError:
print(f"HYDROGENATE: 无法解析时间 '{time_str}',使用默认时间 2小时")
return 7200.0 # 2小时
def find_associated_solenoid_valve(G: nx.DiGraph, device_id: str) -> Optional[str]:
"""查找与指定设备相关联的电磁阀"""
solenoid_valves = [
node for node in G.nodes()
if ('solenoid' in (G.nodes[node].get('class') or '').lower()
or 'solenoid_valve' in node)
]
# 通过网络连接查找直接相连的电磁阀
for solenoid in solenoid_valves:
if G.has_edge(device_id, solenoid) or G.has_edge(solenoid, device_id):
return solenoid
# 通过命名规则查找关联的电磁阀
device_type = ""
if 'gas' in device_id.lower():
device_type = "gas"
elif 'h2' in device_id.lower() or 'hydrogen' in device_id.lower():
device_type = "gas"
if device_type:
for solenoid in solenoid_valves:
if device_type in solenoid.lower():
return solenoid
return None
def find_connected_device(G: nx.DiGraph, vessel: str, device_type: str) -> str:
"""
查找与容器相连的指定类型设备
Args:
G: 网络图
vessel: 容器名称
device_type: 设备类型 ('heater', 'stirrer', 'gas_source')
Returns:
str: 设备ID如果没有则返回None
"""
print(f"HYDROGENATE: 正在查找与容器 '{vessel}' 相连的 {device_type}...")
# 根据设备类型定义搜索关键词
if device_type == 'heater':
keywords = ['heater', 'heat', 'heatchill']
device_class = 'virtual_heatchill'
elif device_type == 'stirrer':
keywords = ['stirrer', 'stir']
device_class = 'virtual_stirrer'
elif device_type == 'gas_source':
keywords = ['gas', 'h2', 'hydrogen']
device_class = 'virtual_gas_source'
else:
return None
# 查找设备节点
device_nodes = []
for node in G.nodes():
node_data = G.nodes[node]
node_name = node.lower()
node_class = node_data.get('class', '').lower()
# 通过名称匹配
if any(keyword in node_name for keyword in keywords):
device_nodes.append(node)
# 通过类型匹配
elif device_class in node_class:
device_nodes.append(node)
print(f"HYDROGENATE: 找到的{device_type}节点: {device_nodes}")
# 检查是否有设备与目标容器相连
for device in device_nodes:
if G.has_edge(device, vessel) or G.has_edge(vessel, device):
print(f"HYDROGENATE: 找到与容器 '{vessel}' 相连的{device_type}: {device}")
return device
# 如果没有直接连接,查找距离最近的设备
for device in device_nodes:
try:
path = nx.shortest_path(G, source=device, target=vessel)
if len(path) <= 3: # 最多2个中间节点
print(f"HYDROGENATE: 找到距离较近的{device_type}: {device}")
return device
except nx.NetworkXNoPath:
continue
print(f"HYDROGENATE: 未找到与容器 '{vessel}' 相连的{device_type}")
return None
def generate_hydrogenate_protocol(
G: nx.DiGraph,
temp: str,
time: str,
vessel: str,
**kwargs # 接收其他可能的参数但不使用
) -> List[Dict[str, Any]]:
"""
生成氢化反应协议序列
Args:
G: 有向图,节点为容器和设备
temp: 反应温度(如 "45 °C"
time: 反应时间(如 "2 h"
vessel: 反应容器
**kwargs: 其他可选参数,但不使用
Returns:
List[Dict[str, Any]]: 动作序列
"""
action_sequence = []
# 解析参数
temperature = parse_temperature(temp)
reaction_time = parse_time(time)
print(f"HYDROGENATE: 开始生成氢化反应协议")
print(f" - 反应温度: {temperature}°C")
print(f" - 反应时间: {reaction_time/3600:.1f} 小时")
print(f" - 反应容器: {vessel}")
# 1. 验证目标容器存在
if vessel not in G.nodes():
print(f"HYDROGENATE: 警告 - 容器 '{vessel}' 不存在于系统中,跳过氢化反应")
return action_sequence
# 2. 查找相连的设备
heater_id = find_connected_device(G, vessel, 'heater')
stirrer_id = find_connected_device(G, vessel, 'stirrer')
gas_source_id = find_connected_device(G, vessel, 'gas_source')
# 3. 启动搅拌器
if stirrer_id:
print(f"HYDROGENATE: 启动搅拌器 {stirrer_id}")
action_sequence.append({
"device_id": stirrer_id,
"action_name": "start_stir",
"action_kwargs": {
"vessel": vessel,
"stir_speed": 300.0,
"purpose": "氢化反应: 开始搅拌"
}
})
else:
print(f"HYDROGENATE: 警告 - 未找到搅拌器,继续执行")
# 4. 启动气源(氢气)- 修复版本
if gas_source_id:
print(f"HYDROGENATE: 启动气源 {gas_source_id} (氢气)")
action_sequence.append({
"device_id": gas_source_id,
"action_name": "set_status", # 修改为 set_status
"action_kwargs": {
"string": "ON" # 修改参数格式
}
})
# 查找相关的电磁阀
gas_solenoid = find_associated_solenoid_valve(G, gas_source_id)
if gas_solenoid:
print(f"HYDROGENATE: 开启气源电磁阀 {gas_solenoid}")
action_sequence.append({
"device_id": gas_solenoid,
"action_name": "set_valve_position",
"action_kwargs": {
"command": "OPEN"
}
})
else:
print(f"HYDROGENATE: 警告 - 未找到气源,继续执行")
# 5. 等待气体稳定
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 30.0,
"description": "等待氢气环境稳定"
}
})
# 6. 启动加热器
if heater_id:
print(f"HYDROGENATE: 启动加热器 {heater_id}{temperature}°C")
action_sequence.append({
"device_id": heater_id,
"action_name": "heat_chill_start",
"action_kwargs": {
"vessel": vessel,
"temp": temperature,
"purpose": f"氢化反应: 加热到 {temperature}°C"
}
})
# 等待温度稳定
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 20.0,
"description": f"等待温度稳定到 {temperature}°C"
}
})
# 🕐 模拟运行时间优化
print("HYDROGENATE: 检查模拟运行时间限制...")
original_reaction_time = reaction_time
simulation_time_limit = 60.0 # 模拟运行时间限制60秒
if reaction_time > simulation_time_limit:
reaction_time = simulation_time_limit
print(f"HYDROGENATE: 模拟运行优化: {original_reaction_time}s → {reaction_time}s (限制为{simulation_time_limit}s)")
print(f"HYDROGENATE: 时间缩短: {original_reaction_time/3600:.2f}小时 → {reaction_time/60:.1f}分钟")
else:
print(f"HYDROGENATE: 时间在限制内: {reaction_time}s ({reaction_time/60:.1f}分钟) 保持不变")
# 保持反应温度
action_sequence.append({
"device_id": heater_id,
"action_name": "heat_chill",
"action_kwargs": {
"vessel": vessel,
"temp": temperature,
"time": reaction_time,
"purpose": f"氢化反应: 保持 {temperature}°C反应 {reaction_time/60:.1f}分钟" + (f" (模拟时间)" if original_reaction_time != reaction_time else "")
}
})
# 显示时间调整信息
if original_reaction_time != reaction_time:
print(f"HYDROGENATE: 模拟优化说明: 原计划 {original_reaction_time/3600:.2f}小时,实际模拟 {reaction_time/60:.1f}分钟")
else:
print(f"HYDROGENATE: 警告 - 未找到加热器,使用室温反应")
# 🕐 室温反应也需要时间优化
print("HYDROGENATE: 检查室温反应模拟时间限制...")
original_reaction_time = reaction_time
simulation_time_limit = 60.0 # 模拟运行时间限制60秒
if reaction_time > simulation_time_limit:
reaction_time = simulation_time_limit
print(f"HYDROGENATE: 室温反应时间优化: {original_reaction_time}s → {reaction_time}s")
print(f"HYDROGENATE: 时间缩短: {original_reaction_time/3600:.2f}小时 → {reaction_time/60:.1f}分钟")
else:
print(f"HYDROGENATE: 室温反应时间在限制内: {reaction_time}s 保持不变")
# 室温反应,只等待时间
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": reaction_time,
"description": f"室温氢化反应 {reaction_time/60:.1f}分钟" + (f" (模拟时间)" if original_reaction_time != reaction_time else "")
}
})
# 显示时间调整信息
if original_reaction_time != reaction_time:
print(f"HYDROGENATE: 室温反应优化说明: 原计划 {original_reaction_time/3600:.2f}小时,实际模拟 {reaction_time/60:.1f}分钟")
# 7. 停止加热
if heater_id:
action_sequence.append({
"device_id": heater_id,
"action_name": "heat_chill_stop",
"action_kwargs": {
"vessel": vessel,
"purpose": "氢化反应完成,停止加热"
}
})
# 8. 等待冷却
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 300.0,
"description": "等待反应混合物冷却"
}
})
# 9. 停止气源 - 修复版本
if gas_source_id:
# 先关闭电磁阀
gas_solenoid = find_associated_solenoid_valve(G, gas_source_id)
if gas_solenoid:
print(f"HYDROGENATE: 关闭气源电磁阀 {gas_solenoid}")
action_sequence.append({
"device_id": gas_solenoid,
"action_name": "set_valve_position",
"action_kwargs": {
"command": "CLOSED"
}
})
# 再关闭气源
action_sequence.append({
"device_id": gas_source_id,
"action_name": "set_status", # 修改为 set_status
"action_kwargs": {
"string": "OFF" # 修改参数格式
}
})
# 10. 停止搅拌
if stirrer_id:
action_sequence.append({
"device_id": stirrer_id,
"action_name": "stop_stir",
"action_kwargs": {
"vessel": vessel,
"purpose": "氢化反应完成,停止搅拌"
}
})
print(f"HYDROGENATE: 协议生成完成,共 {len(action_sequence)} 个动作")
print(f"HYDROGENATE: 预计总时间: {(reaction_time + 450)/3600:.1f} 小时")
return action_sequence
# 测试函数
def test_hydrogenate_protocol():
"""测试氢化反应协议"""
print("=== HYDROGENATE PROTOCOL 测试 ===")
# 测试温度解析
test_temps = ["45 °C", "45°C", "45", "25 C", "invalid"]
for temp in test_temps:
parsed = parse_temperature(temp)
print(f"温度 '{temp}' -> {parsed}°C")
# 测试时间解析
test_times = ["2 h", "120 min", "7200 s", "2", "invalid"]
for time in test_times:
parsed = parse_time(time)
print(f"时间 '{time}' -> {parsed/3600:.1f} 小时")
print("测试完成")
if __name__ == "__main__":
test_hydrogenate_protocol()

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import networkx as nx
import re
from typing import List, Dict, Any, Tuple, Union
from .pump_protocol import generate_pump_protocol_with_rinsing
def debug_print(message):
"""调试输出"""
print(f"💎 [RECRYSTALLIZE] {message}", flush=True)
def parse_volume_with_units(volume_input: Union[str, float, int], default_unit: str = "mL") -> float:
"""
解析带单位的体积输入
Args:
volume_input: 体积输入(如 "100 mL", "2.5 L", "500", "?", 100.0
default_unit: 默认单位(默认为毫升)
Returns:
float: 体积(毫升)
"""
if not volume_input:
debug_print("⚠️ 体积输入为空,返回 0.0mL 📦")
return 0.0
# 处理数值输入
if isinstance(volume_input, (int, float)):
result = float(volume_input)
debug_print(f"🔢 数值体积输入: {volume_input}{result}mL默认单位💧")
return result
# 处理字符串输入
volume_str = str(volume_input).lower().strip()
debug_print(f"🔍 解析体积字符串: '{volume_str}' 📝")
# 处理特殊值
if volume_str in ['?', 'unknown', 'tbd', 'to be determined']:
default_volume = 50.0 # 50mL默认值
debug_print(f"❓ 检测到未知体积,使用默认值: {default_volume}mL 🎯")
return default_volume
# 如果是纯数字,使用默认单位
try:
value = float(volume_str)
if default_unit.lower() in ["ml", "milliliter"]:
result = value
elif default_unit.lower() in ["l", "liter"]:
result = value * 1000.0
elif default_unit.lower() in ["μl", "ul", "microliter"]:
result = value / 1000.0
else:
result = value # 默认mL
debug_print(f"🔢 纯数字输入: {volume_str}{result}mL单位: {default_unit})📏")
return result
except ValueError:
pass
# 移除空格并提取数字和单位
volume_clean = re.sub(r'\s+', '', volume_str)
# 匹配数字和单位的正则表达式
match = re.match(r'([0-9]*\.?[0-9]+)\s*(ml|l|μl|ul|microliter|milliliter|liter)?', volume_clean)
if not match:
debug_print(f"⚠️ 无法解析体积: '{volume_str}',使用默认值: 50mL 🎯")
return 50.0
value = float(match.group(1))
unit = match.group(2) or default_unit.lower()
# 转换为毫升
if unit in ['l', 'liter']:
volume = value * 1000.0 # L -> mL
debug_print(f"📏 升转毫升: {value}L → {volume}mL 💧")
elif unit in ['μl', 'ul', 'microliter']:
volume = value / 1000.0 # μL -> mL
debug_print(f"📏 微升转毫升: {value}μL → {volume}mL 💧")
else: # ml, milliliter 或默认
volume = value # 已经是mL
debug_print(f"📏 毫升单位: {value}mL → {volume}mL 💧")
debug_print(f"✅ 体积解析完成: '{volume_str}'{volume}mL ✨")
return volume
def parse_ratio(ratio_str: str) -> Tuple[float, float]:
"""
解析比例字符串,支持多种格式
Args:
ratio_str: 比例字符串(如 "1:1", "3:7", "50:50"
Returns:
Tuple[float, float]: 比例元组 (ratio1, ratio2)
"""
debug_print(f"⚖️ 开始解析比例: '{ratio_str}' 📊")
try:
# 处理 "1:1", "3:7", "50:50" 等格式
if ":" in ratio_str:
parts = ratio_str.split(":")
if len(parts) == 2:
ratio1 = float(parts[0])
ratio2 = float(parts[1])
debug_print(f"✅ 冒号格式解析成功: {ratio1}:{ratio2} 🎯")
return ratio1, ratio2
# 处理 "1-1", "3-7" 等格式
if "-" in ratio_str:
parts = ratio_str.split("-")
if len(parts) == 2:
ratio1 = float(parts[0])
ratio2 = float(parts[1])
debug_print(f"✅ 横线格式解析成功: {ratio1}:{ratio2} 🎯")
return ratio1, ratio2
# 处理 "1,1", "3,7" 等格式
if "," in ratio_str:
parts = ratio_str.split(",")
if len(parts) == 2:
ratio1 = float(parts[0])
ratio2 = float(parts[1])
debug_print(f"✅ 逗号格式解析成功: {ratio1}:{ratio2} 🎯")
return ratio1, ratio2
# 默认 1:1
debug_print(f"⚠️ 无法解析比例 '{ratio_str}',使用默认比例 1:1 🎭")
return 1.0, 1.0
except ValueError:
debug_print(f"❌ 比例解析错误 '{ratio_str}',使用默认比例 1:1 🎭")
return 1.0, 1.0
def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
"""
查找溶剂容器
Args:
G: 网络图
solvent: 溶剂名称
Returns:
str: 溶剂容器ID
"""
debug_print(f"🔍 正在查找溶剂 '{solvent}' 的容器... 🧪")
# 构建可能的容器名称
possible_names = [
f"flask_{solvent}",
f"bottle_{solvent}",
f"reagent_{solvent}",
f"reagent_bottle_{solvent}",
f"{solvent}_flask",
f"{solvent}_bottle",
f"{solvent}",
f"vessel_{solvent}",
]
debug_print(f"📋 候选容器名称: {possible_names[:3]}... (共{len(possible_names)}个) 📝")
# 第一步:通过容器名称匹配
debug_print(" 🎯 步骤1: 精确名称匹配...")
for vessel_name in possible_names:
if vessel_name in G.nodes():
debug_print(f" 🎉 通过名称匹配找到容器: {vessel_name}")
return vessel_name
# 第二步:通过模糊匹配
debug_print(" 🔍 步骤2: 模糊名称匹配...")
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
node_name = G.nodes[node_id].get('name', '').lower()
if solvent.lower() in node_id.lower() or solvent.lower() in node_name:
debug_print(f" 🎉 通过模糊匹配找到容器: {node_id}")
return node_id
# 第三步:通过液体类型匹配
debug_print(" 🧪 步骤3: 液体类型匹配...")
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
vessel_data = G.nodes[node_id].get('data', {})
liquids = vessel_data.get('liquid', [])
for liquid in liquids:
if isinstance(liquid, dict):
liquid_type = (liquid.get('liquid_type') or liquid.get('name', '')).lower()
reagent_name = vessel_data.get('reagent_name', '').lower()
if solvent.lower() in liquid_type or solvent.lower() in reagent_name:
debug_print(f" 🎉 通过液体类型匹配找到容器: {node_id}")
return node_id
debug_print(f"❌ 找不到溶剂 '{solvent}' 对应的容器 😭")
raise ValueError(f"找不到溶剂 '{solvent}' 对应的容器")
def generate_recrystallize_protocol(
G: nx.DiGraph,
ratio: str,
solvent1: str,
solvent2: str,
vessel: str,
volume: Union[str, float], # 🔧 修改:支持字符串和数值
**kwargs
) -> List[Dict[str, Any]]:
"""
生成重结晶协议序列 - 支持单位
Args:
G: 有向图,节点为容器和设备
ratio: 溶剂比例(如 "1:1", "3:7"
solvent1: 第一种溶剂名称
solvent2: 第二种溶剂名称
vessel: 目标容器
volume: 总体积(支持 "100 mL", "50", "2.5 L" 等)
**kwargs: 其他可选参数
Returns:
List[Dict[str, Any]]: 动作序列
"""
action_sequence = []
debug_print("💎" * 20)
debug_print("🚀 开始生成重结晶协议(支持单位)✨")
debug_print(f"📝 输入参数:")
debug_print(f" ⚖️ 比例: {ratio}")
debug_print(f" 🧪 溶剂1: {solvent1}")
debug_print(f" 🧪 溶剂2: {solvent2}")
debug_print(f" 🥽 容器: {vessel}")
debug_print(f" 💧 总体积: {volume} (类型: {type(volume)})")
debug_print("💎" * 20)
# 1. 验证目标容器存在
debug_print("📍 步骤1: 验证目标容器... 🔧")
if vessel not in G.nodes():
debug_print(f"❌ 目标容器 '{vessel}' 不存在于系统中! 😱")
raise ValueError(f"目标容器 '{vessel}' 不存在于系统中")
debug_print(f"✅ 目标容器 '{vessel}' 验证通过 🎯")
# 2. 🔧 新增:解析体积(支持单位)
debug_print("📍 步骤2: 解析体积(支持单位)... 💧")
final_volume = parse_volume_with_units(volume, "mL")
debug_print(f"🎯 体积解析完成: {volume}{final_volume}mL ✨")
# 3. 解析比例
debug_print("📍 步骤3: 解析比例... ⚖️")
ratio1, ratio2 = parse_ratio(ratio)
total_ratio = ratio1 + ratio2
debug_print(f"🎯 比例解析完成: {ratio1}:{ratio2} (总比例: {total_ratio}) ✨")
# 4. 计算各溶剂体积
debug_print("📍 步骤4: 计算各溶剂体积... 🧮")
volume1 = final_volume * (ratio1 / total_ratio)
volume2 = final_volume * (ratio2 / total_ratio)
debug_print(f"🧪 {solvent1} 体积: {volume1:.2f} mL ({ratio1}/{total_ratio} × {final_volume})")
debug_print(f"🧪 {solvent2} 体积: {volume2:.2f} mL ({ratio2}/{total_ratio} × {final_volume})")
debug_print(f"✅ 体积计算完成: 总计 {volume1 + volume2:.2f} mL 🎯")
# 5. 查找溶剂容器
debug_print("📍 步骤5: 查找溶剂容器... 🔍")
try:
debug_print(f" 🔍 查找溶剂1容器...")
solvent1_vessel = find_solvent_vessel(G, solvent1)
debug_print(f" 🎉 找到溶剂1容器: {solvent1_vessel}")
except ValueError as e:
debug_print(f" ❌ 溶剂1容器查找失败: {str(e)} 😭")
raise ValueError(f"无法找到溶剂1 '{solvent1}': {str(e)}")
try:
debug_print(f" 🔍 查找溶剂2容器...")
solvent2_vessel = find_solvent_vessel(G, solvent2)
debug_print(f" 🎉 找到溶剂2容器: {solvent2_vessel}")
except ValueError as e:
debug_print(f" ❌ 溶剂2容器查找失败: {str(e)} 😭")
raise ValueError(f"无法找到溶剂2 '{solvent2}': {str(e)}")
# 6. 验证路径存在
debug_print("📍 步骤6: 验证传输路径... 🛤️")
try:
path1 = nx.shortest_path(G, source=solvent1_vessel, target=vessel)
debug_print(f" 🛤️ 溶剂1路径: {''.join(path1)}")
except nx.NetworkXNoPath:
debug_print(f" ❌ 溶剂1路径不可达: {solvent1_vessel}{vessel} 😞")
raise ValueError(f"从溶剂1容器 '{solvent1_vessel}' 到目标容器 '{vessel}' 没有可用路径")
try:
path2 = nx.shortest_path(G, source=solvent2_vessel, target=vessel)
debug_print(f" 🛤️ 溶剂2路径: {''.join(path2)}")
except nx.NetworkXNoPath:
debug_print(f" ❌ 溶剂2路径不可达: {solvent2_vessel}{vessel} 😞")
raise ValueError(f"从溶剂2容器 '{solvent2_vessel}' 到目标容器 '{vessel}' 没有可用路径")
# 7. 添加第一种溶剂
debug_print("📍 步骤7: 添加第一种溶剂... 🧪")
debug_print(f" 🚰 开始添加溶剂1: {solvent1} ({volume1:.2f} mL)")
try:
pump_actions1 = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=solvent1_vessel,
to_vessel=vessel,
volume=volume1, # 使用解析后的体积
amount="",
time=0.0,
viscous=False,
rinsing_solvent="", # 重结晶不需要清洗
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=2.0, # 正常流速
transfer_flowrate=0.5
)
action_sequence.extend(pump_actions1)
debug_print(f" ✅ 溶剂1泵送动作已添加: {len(pump_actions1)} 个动作 🚰✨")
except Exception as e:
debug_print(f" ❌ 溶剂1泵协议生成失败: {str(e)} 😭")
raise ValueError(f"生成溶剂1泵协议时出错: {str(e)}")
# 8. 等待溶剂1稳定
debug_print(" ⏳ 添加溶剂1稳定等待...")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 5.0, # 🕐 缩短等待时间10.0s → 5.0s
"description": f"等待溶剂1 {solvent1} 稳定"
}
})
debug_print(" ✅ 溶剂1稳定等待已添加 ⏰✨")
# 9. 添加第二种溶剂
debug_print("📍 步骤8: 添加第二种溶剂... 🧪")
debug_print(f" 🚰 开始添加溶剂2: {solvent2} ({volume2:.2f} mL)")
try:
pump_actions2 = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=solvent2_vessel,
to_vessel=vessel,
volume=volume2, # 使用解析后的体积
amount="",
time=0.0,
viscous=False,
rinsing_solvent="", # 重结晶不需要清洗
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=2.0, # 正常流速
transfer_flowrate=0.5
)
action_sequence.extend(pump_actions2)
debug_print(f" ✅ 溶剂2泵送动作已添加: {len(pump_actions2)} 个动作 🚰✨")
except Exception as e:
debug_print(f" ❌ 溶剂2泵协议生成失败: {str(e)} 😭")
raise ValueError(f"生成溶剂2泵协议时出错: {str(e)}")
# 10. 等待溶剂2稳定
debug_print(" ⏳ 添加溶剂2稳定等待...")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 5.0, # 🕐 缩短等待时间10.0s → 5.0s
"description": f"等待溶剂2 {solvent2} 稳定"
}
})
debug_print(" ✅ 溶剂2稳定等待已添加 ⏰✨")
# 11. 等待重结晶完成
debug_print("📍 步骤9: 等待重结晶完成... 💎")
# 🕐 模拟运行时间优化
debug_print(" ⏱️ 检查模拟运行时间限制...")
original_crystallize_time = 600.0 # 原始重结晶时间
simulation_time_limit = 60.0 # 模拟运行时间限制60秒
final_crystallize_time = min(original_crystallize_time, simulation_time_limit)
if original_crystallize_time > simulation_time_limit:
debug_print(f" 🎮 模拟运行优化: {original_crystallize_time}s → {final_crystallize_time}s ⚡")
debug_print(f" 📊 时间缩短: {original_crystallize_time/60:.1f}分钟 → {final_crystallize_time/60:.1f}分钟 🚀")
else:
debug_print(f" ✅ 时间在限制内: {final_crystallize_time}s 保持不变 🎯")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": final_crystallize_time,
"description": f"等待重结晶完成({solvent1}:{solvent2} = {ratio},总体积 {final_volume}mL" + (f" (模拟时间)" if original_crystallize_time != final_crystallize_time else "")
}
})
debug_print(f" ✅ 重结晶等待已添加: {final_crystallize_time}s 💎✨")
# 显示时间调整信息
if original_crystallize_time != final_crystallize_time:
debug_print(f" 🎭 模拟优化说明: 原计划 {original_crystallize_time/60:.1f}分钟,实际模拟 {final_crystallize_time/60:.1f}分钟 ⚡")
# 🎊 总结
debug_print("💎" * 20)
debug_print(f"🎉 重结晶协议生成完成! ✨")
debug_print(f"📊 总动作数: {len(action_sequence)}")
debug_print(f"🥽 目标容器: {vessel}")
debug_print(f"💧 总体积: {final_volume}mL")
debug_print(f"⚖️ 溶剂比例: {solvent1}:{solvent2} = {ratio1}:{ratio2}")
debug_print(f"🧪 溶剂1: {solvent1} ({volume1:.2f}mL)")
debug_print(f"🧪 溶剂2: {solvent2} ({volume2:.2f}mL)")
debug_print(f"⏱️ 预计总时间: {(final_crystallize_time + 10)/60:.1f} 分钟 ⌛")
debug_print("💎" * 20)
return action_sequence
# 测试函数
def test_recrystallize_protocol():
"""测试重结晶协议"""
debug_print("🧪 === RECRYSTALLIZE PROTOCOL 测试 === ✨")
# 测试比例解析
debug_print("⚖️ 测试比例解析...")
test_ratios = ["1:1", "3:7", "50:50", "1-1", "2,8", "invalid"]
for ratio in test_ratios:
r1, r2 = parse_ratio(ratio)
debug_print(f" 📊 比例 '{ratio}' -> {r1}:{r2}")
debug_print("✅ 测试完成 🎉")
if __name__ == "__main__":
test_recrystallize_protocol()

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import networkx as nx
from typing import List, Dict, Any
from .pump_protocol import generate_pump_protocol_with_rinsing
def debug_print(message):
"""调试输出"""
print(f"🔄 [RESET_HANDLING] {message}", flush=True)
def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
"""
查找溶剂容器,支持多种匹配模式
Args:
G: 网络图
solvent: 溶剂名称(如 "methanol", "ethanol", "water"
Returns:
str: 溶剂容器ID
"""
debug_print(f"🔍 正在查找溶剂 '{solvent}' 的容器... 🧪")
# 构建可能的容器名称
possible_names = [
f"flask_{solvent}", # flask_methanol
f"bottle_{solvent}", # bottle_methanol
f"reagent_{solvent}", # reagent_methanol
f"reagent_bottle_{solvent}", # reagent_bottle_methanol
f"{solvent}_flask", # methanol_flask
f"{solvent}_bottle", # methanol_bottle
f"{solvent}", # methanol
f"vessel_{solvent}", # vessel_methanol
]
debug_print(f"📋 候选容器名称: {possible_names[:3]}... (共{len(possible_names)}个) 📝")
# 第一步:通过容器名称匹配
debug_print(" 🎯 步骤1: 精确名称匹配...")
for vessel_name in possible_names:
if vessel_name in G.nodes():
debug_print(f" 🎉 通过名称匹配找到容器: {vessel_name}")
return vessel_name
debug_print(" 😞 精确名称匹配失败,尝试模糊匹配... 🔍")
# 第二步:通过模糊匹配
debug_print(" 🔍 步骤2: 模糊名称匹配...")
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
node_name = G.nodes[node_id].get('name', '').lower()
# 检查是否包含溶剂名称
if solvent.lower() in node_id.lower() or solvent.lower() in node_name:
debug_print(f" 🎉 通过模糊匹配找到容器: {node_id}")
return node_id
debug_print(" 😞 模糊匹配失败,尝试液体类型匹配... 🧪")
# 第三步:通过液体类型匹配
debug_print(" 🧪 步骤3: 液体类型匹配...")
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
vessel_data = G.nodes[node_id].get('data', {})
liquids = vessel_data.get('liquid', [])
for liquid in liquids:
if isinstance(liquid, dict):
liquid_type = (liquid.get('liquid_type') or liquid.get('name', '')).lower()
reagent_name = vessel_data.get('reagent_name', '').lower()
if solvent.lower() in liquid_type or solvent.lower() in reagent_name:
debug_print(f" 🎉 通过液体类型匹配找到容器: {node_id}")
return node_id
# 列出可用容器帮助调试
debug_print(" 📊 显示可用容器信息...")
available_containers = []
for node_id in G.nodes():
if G.nodes[node_id].get('type') == 'container':
vessel_data = G.nodes[node_id].get('data', {})
liquids = vessel_data.get('liquid', [])
liquid_types = [liquid.get('liquid_type', '') or liquid.get('name', '')
for liquid in liquids if isinstance(liquid, dict)]
available_containers.append({
'id': node_id,
'name': G.nodes[node_id].get('name', ''),
'liquids': liquid_types,
'reagent_name': vessel_data.get('reagent_name', '')
})
debug_print(f" 📋 可用容器列表 (共{len(available_containers)}个):")
for i, container in enumerate(available_containers[:5]): # 只显示前5个
debug_print(f" {i+1}. 🥽 {container['id']}: {container['name']}")
debug_print(f" 💧 液体: {container['liquids']}")
debug_print(f" 🧪 试剂: {container['reagent_name']}")
if len(available_containers) > 5:
debug_print(f" ... 还有 {len(available_containers)-5} 个容器 📦")
debug_print(f"❌ 找不到溶剂 '{solvent}' 对应的容器 😭")
raise ValueError(f"找不到溶剂 '{solvent}' 对应的容器。尝试了: {possible_names[:3]}...")
def generate_reset_handling_protocol(
G: nx.DiGraph,
solvent: str,
**kwargs # 接收其他可能的参数但不使用
) -> List[Dict[str, Any]]:
"""
生成重置处理协议序列
Args:
G: 有向图,节点为容器和设备
solvent: 溶剂名称从XDL传入
**kwargs: 其他可选参数,但不使用
Returns:
List[Dict[str, Any]]: 动作序列
"""
action_sequence = []
# 固定参数
target_vessel = "main_reactor" # 默认目标容器
volume = 50.0 # 默认体积 50 mL
debug_print("🔄" * 20)
debug_print("🚀 开始生成重置处理协议 ✨")
debug_print(f"📝 输入参数:")
debug_print(f" 🧪 溶剂: {solvent}")
debug_print(f" 🥽 目标容器: {target_vessel}")
debug_print(f" 💧 体积: {volume} mL")
debug_print(f" ⚙️ 其他参数: {kwargs}")
debug_print("🔄" * 20)
# 1. 验证目标容器存在
debug_print("📍 步骤1: 验证目标容器... 🔧")
if target_vessel not in G.nodes():
debug_print(f"❌ 目标容器 '{target_vessel}' 不存在于系统中! 😱")
raise ValueError(f"目标容器 '{target_vessel}' 不存在于系统中")
debug_print(f"✅ 目标容器 '{target_vessel}' 验证通过 🎯")
# 2. 查找溶剂容器
debug_print("📍 步骤2: 查找溶剂容器... 🔍")
try:
solvent_vessel = find_solvent_vessel(G, solvent)
debug_print(f"🎉 找到溶剂容器: {solvent_vessel}")
except ValueError as e:
debug_print(f"❌ 溶剂容器查找失败: {str(e)} 😭")
raise ValueError(f"无法找到溶剂 '{solvent}': {str(e)}")
# 3. 验证路径存在
debug_print("📍 步骤3: 验证传输路径... 🛤️")
try:
path = nx.shortest_path(G, source=solvent_vessel, target=target_vessel)
debug_print(f"🛤️ 找到路径: {''.join(path)}")
except nx.NetworkXNoPath:
debug_print(f"❌ 路径不可达: {solvent_vessel}{target_vessel} 😞")
raise ValueError(f"从溶剂容器 '{solvent_vessel}' 到目标容器 '{target_vessel}' 没有可用路径")
# 4. 使用pump_protocol转移溶剂
debug_print("📍 步骤4: 转移溶剂... 🚰")
debug_print(f" 🚛 开始转移: {solvent_vessel}{target_vessel}")
debug_print(f" 💧 转移体积: {volume} mL")
try:
debug_print(" 🔄 生成泵送协议...")
pump_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=solvent_vessel,
to_vessel=target_vessel,
volume=volume,
amount="",
time=0.0,
viscous=False,
rinsing_solvent="", # 重置处理不需要清洗
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=2.5, # 正常流速
transfer_flowrate=0.5 # 正常转移流速
)
action_sequence.extend(pump_actions)
debug_print(f" ✅ 泵送协议已添加: {len(pump_actions)} 个动作 🚰✨")
except Exception as e:
debug_print(f" ❌ 泵送协议生成失败: {str(e)} 😭")
raise ValueError(f"生成泵协议时出错: {str(e)}")
# 5. 等待溶剂稳定
debug_print("📍 步骤5: 等待溶剂稳定... ⏳")
# 🕐 模拟运行时间优化
debug_print(" ⏱️ 检查模拟运行时间限制...")
original_wait_time = 10.0 # 原始等待时间
simulation_time_limit = 5.0 # 模拟运行时间限制5秒
final_wait_time = min(original_wait_time, simulation_time_limit)
if original_wait_time > simulation_time_limit:
debug_print(f" 🎮 模拟运行优化: {original_wait_time}s → {final_wait_time}s ⚡")
debug_print(f" 📊 时间缩短: {original_wait_time}s → {final_wait_time}s 🚀")
else:
debug_print(f" ✅ 时间在限制内: {final_wait_time}s 保持不变 🎯")
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": final_wait_time,
"description": f"等待溶剂 {solvent} 稳定" + (f" (模拟时间)" if original_wait_time != final_wait_time else "")
}
})
debug_print(f" ✅ 稳定等待已添加: {final_wait_time}s ⏰✨")
# 显示时间调整信息
if original_wait_time != final_wait_time:
debug_print(f" 🎭 模拟优化说明: 原计划 {original_wait_time}s实际模拟 {final_wait_time}s ⚡")
# 🎊 总结
debug_print("🔄" * 20)
debug_print(f"🎉 重置处理协议生成完成! ✨")
debug_print(f"📊 总动作数: {len(action_sequence)}")
debug_print(f"🧪 溶剂: {solvent}")
debug_print(f"🥽 源容器: {solvent_vessel}")
debug_print(f"🥽 目标容器: {target_vessel}")
debug_print(f"💧 转移体积: {volume} mL")
debug_print(f"⏱️ 预计总时间: {(final_wait_time + 5):.0f} 秒 ⌛")
debug_print(f"🎯 已添加 {volume} mL {solvent}{target_vessel} 🚰✨")
debug_print("🔄" * 20)
return action_sequence
# 测试函数
def test_reset_handling_protocol():
"""测试重置处理协议"""
debug_print("🧪 === RESET HANDLING PROTOCOL 测试 === ✨")
# 测试溶剂名称
debug_print("🧪 测试常用溶剂名称...")
test_solvents = ["methanol", "ethanol", "water", "acetone", "dmso"]
for solvent in test_solvents:
debug_print(f" 🔍 测试溶剂: {solvent}")
debug_print("✅ 测试完成 🎉")
if __name__ == "__main__":
test_reset_handling_protocol()

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@@ -1,102 +1,646 @@
from typing import List, Dict, Any
from typing import List, Dict, Any, Union
import networkx as nx
import logging
import re
from .pump_protocol import generate_pump_protocol_with_rinsing
logger = logging.getLogger(__name__)
def debug_print(message):
"""调试输出"""
print(f"[RUN_COLUMN] {message}", flush=True)
logger.info(f"[RUN_COLUMN] {message}")
def parse_percentage(pct_str: str) -> float:
"""
解析百分比字符串为数值
Args:
pct_str: 百分比字符串(如 "40 %", "40%", "40"
Returns:
float: 百分比数值0-100
"""
if not pct_str or not pct_str.strip():
return 0.0
pct_str = pct_str.strip().lower()
debug_print(f"解析百分比: '{pct_str}'")
# 移除百分号和空格
pct_clean = re.sub(r'[%\s]', '', pct_str)
# 提取数字
match = re.search(r'([0-9]*\.?[0-9]+)', pct_clean)
if match:
value = float(match.group(1))
debug_print(f"百分比解析结果: {value}%")
return value
debug_print(f"⚠️ 无法解析百分比: '{pct_str}'返回0.0")
return 0.0
def parse_ratio(ratio_str: str) -> tuple:
"""
解析比例字符串为两个数值
Args:
ratio_str: 比例字符串(如 "5:95", "1:1", "40:60"
Returns:
tuple: (ratio1, ratio2) 两个比例值
"""
if not ratio_str or not ratio_str.strip():
return (50.0, 50.0) # 默认1:1
ratio_str = ratio_str.strip()
debug_print(f"解析比例: '{ratio_str}'")
# 支持多种分隔符:: / -
if ':' in ratio_str:
parts = ratio_str.split(':')
elif '/' in ratio_str:
parts = ratio_str.split('/')
elif '-' in ratio_str:
parts = ratio_str.split('-')
elif 'to' in ratio_str.lower():
parts = ratio_str.lower().split('to')
else:
debug_print(f"⚠️ 无法解析比例格式: '{ratio_str}'使用默认1:1")
return (50.0, 50.0)
if len(parts) >= 2:
try:
ratio1 = float(parts[0].strip())
ratio2 = float(parts[1].strip())
total = ratio1 + ratio2
# 转换为百分比
pct1 = (ratio1 / total) * 100
pct2 = (ratio2 / total) * 100
debug_print(f"比例解析结果: {ratio1}:{ratio2} -> {pct1:.1f}%:{pct2:.1f}%")
return (pct1, pct2)
except ValueError as e:
debug_print(f"⚠️ 比例数值转换失败: {str(e)}")
debug_print(f"⚠️ 比例解析失败使用默认1:1")
return (50.0, 50.0)
def parse_rf_value(rf_str: str) -> float:
"""
解析Rf值字符串
Args:
rf_str: Rf值字符串"0.3", "0.45", "?"
Returns:
float: Rf值0-1
"""
if not rf_str or not rf_str.strip():
return 0.3 # 默认Rf值
rf_str = rf_str.strip().lower()
debug_print(f"解析Rf值: '{rf_str}'")
# 处理未知Rf值
if rf_str in ['?', 'unknown', 'tbd', 'to be determined']:
default_rf = 0.3
debug_print(f"检测到未知Rf值使用默认值: {default_rf}")
return default_rf
# 提取数字
match = re.search(r'([0-9]*\.?[0-9]+)', rf_str)
if match:
value = float(match.group(1))
# 确保Rf值在0-1范围内
if value > 1.0:
value = value / 100.0 # 可能是百分比形式
value = max(0.0, min(1.0, value)) # 限制在0-1范围
debug_print(f"Rf值解析结果: {value}")
return value
debug_print(f"⚠️ 无法解析Rf值: '{rf_str}'使用默认值0.3")
return 0.3
def find_column_device(G: nx.DiGraph) -> str:
"""查找柱层析设备"""
debug_print("查找柱层析设备...")
# 查找虚拟柱设备
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if 'virtual_column' in node_class.lower() or 'column' in node_class.lower():
debug_print(f"✅ 找到柱层析设备: {node}")
return node
# 如果没有找到,尝试创建虚拟设备名称
possible_names = ['column_1', 'virtual_column_1', 'chromatography_column_1']
for name in possible_names:
if name in G.nodes():
debug_print(f"✅ 找到柱设备: {name}")
return name
debug_print("⚠️ 未找到柱层析设备将使用pump protocol直接转移")
return ""
def find_column_vessel(G: nx.DiGraph, column: str) -> str:
"""查找柱容器"""
debug_print(f"查找柱容器: '{column}'")
# 直接检查column参数是否是容器
if column in G.nodes():
node_type = G.nodes[column].get('type', '')
if node_type == 'container':
debug_print(f"✅ 找到柱容器: {column}")
return column
# 尝试常见的命名规则
possible_names = [
f"column_{column}",
f"{column}_column",
f"vessel_{column}",
f"{column}_vessel",
"column_vessel",
"chromatography_column",
"silica_column",
"preparative_column",
"column"
]
for vessel_name in possible_names:
if vessel_name in G.nodes():
node_type = G.nodes[vessel_name].get('type', '')
if node_type == 'container':
debug_print(f"✅ 找到柱容器: {vessel_name}")
return vessel_name
debug_print(f"⚠️ 未找到柱容器,将直接在源容器中进行分离")
return ""
def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
"""查找溶剂容器 - 增强版"""
if not solvent or not solvent.strip():
return ""
solvent = solvent.strip().replace(' ', '_').lower()
debug_print(f"查找溶剂容器: '{solvent}'")
# 🔧 方法1直接搜索 data.reagent_name
for node in G.nodes():
node_data = G.nodes[node].get('data', {})
node_type = G.nodes[node].get('type', '')
# 只搜索容器类型的节点
if node_type == 'container':
reagent_name = node_data.get('reagent_name', '').lower()
reagent_config = G.nodes[node].get('config', {}).get('reagent', '').lower()
# 检查 data.reagent_name 和 config.reagent
if reagent_name == solvent or reagent_config == solvent:
debug_print(f"✅ 通过reagent_name找到溶剂容器: {node} (reagent: {reagent_name or reagent_config})")
return node
# 模糊匹配 reagent_name
if solvent in reagent_name or reagent_name in solvent:
debug_print(f"✅ 通过reagent_name模糊匹配到溶剂容器: {node} (reagent: {reagent_name})")
return node
if solvent in reagent_config or reagent_config in solvent:
debug_print(f"✅ 通过config.reagent模糊匹配到溶剂容器: {node} (reagent: {reagent_config})")
return node
# 🔧 方法2常见的溶剂容器命名规则
possible_names = [
f"flask_{solvent}",
f"bottle_{solvent}",
f"reagent_{solvent}",
f"{solvent}_bottle",
f"{solvent}_flask",
f"solvent_{solvent}",
f"reagent_bottle_{solvent}"
]
for vessel_name in possible_names:
if vessel_name in G.nodes():
node_type = G.nodes[vessel_name].get('type', '')
if node_type == 'container':
debug_print(f"✅ 通过命名规则找到溶剂容器: {vessel_name}")
return vessel_name
# 🔧 方法3节点名称模糊匹配
for node in G.nodes():
node_type = G.nodes[node].get('type', '')
if node_type == 'container':
if ('flask_' in node or 'bottle_' in node or 'reagent_' in node) and solvent in node.lower():
debug_print(f"✅ 通过节点名称模糊匹配到溶剂容器: {node}")
return node
# 🔧 方法4特殊溶剂名称映射
solvent_mapping = {
'dmf': ['dmf', 'dimethylformamide', 'n,n-dimethylformamide'],
'ethyl_acetate': ['ethyl_acetate', 'ethylacetate', 'etoac', 'ea'],
'hexane': ['hexane', 'hexanes', 'n-hexane'],
'methanol': ['methanol', 'meoh', 'ch3oh'],
'water': ['water', 'h2o', 'distilled_water'],
'acetone': ['acetone', 'ch3coch3', '2-propanone'],
'dichloromethane': ['dichloromethane', 'dcm', 'ch2cl2', 'methylene_chloride'],
'chloroform': ['chloroform', 'chcl3', 'trichloromethane']
}
# 查找映射的同义词
for canonical_name, synonyms in solvent_mapping.items():
if solvent in synonyms:
debug_print(f"检测到溶剂同义词: '{solvent}' -> '{canonical_name}'")
return find_solvent_vessel(G, canonical_name) # 递归搜索
debug_print(f"⚠️ 未找到溶剂 '{solvent}' 的容器")
return ""
def get_vessel_liquid_volume(G: nx.DiGraph, vessel: str) -> float:
"""获取容器中的液体体积 - 增强版"""
if vessel not in G.nodes():
debug_print(f"⚠️ 节点 '{vessel}' 不存在")
return 0.0
node_type = G.nodes[vessel].get('type', '')
vessel_data = G.nodes[vessel].get('data', {})
debug_print(f"读取节点 '{vessel}' (类型: {node_type}) 体积数据: {vessel_data}")
# 🔧 如果是设备类型,尝试查找关联的容器
if node_type == 'device':
debug_print(f"'{vessel}' 是设备,尝试查找关联容器...")
# 查找是否有内置容器数据
config_data = G.nodes[vessel].get('config', {})
if 'volume' in config_data:
default_volume = config_data.get('volume', 50.0)
debug_print(f"使用设备默认容量: {default_volume}mL")
return default_volume
# 对于旋蒸等设备,使用默认值
if 'rotavap' in vessel.lower():
default_volume = 50.0
debug_print(f"旋蒸设备使用默认容量: {default_volume}mL")
return default_volume
debug_print(f"⚠️ 设备 '{vessel}' 无法确定容量返回0")
return 0.0
# 🔧 如果是容器类型,正常读取体积
total_volume = 0.0
# 方法1检查液体列表
liquids = vessel_data.get('liquid', [])
if isinstance(liquids, list):
for liquid in liquids:
if isinstance(liquid, dict):
volume = liquid.get('volume') or liquid.get('liquid_volume', 0.0)
total_volume += volume
# 方法2检查直接体积字段
if total_volume == 0.0:
volume_keys = ['current_volume', 'total_volume', 'volume', 'liquid_volume']
for key in volume_keys:
if key in vessel_data:
try:
total_volume = float(vessel_data[key])
if total_volume > 0:
break
except (ValueError, TypeError):
continue
# 方法3检查配置中的初始体积
if total_volume == 0.0:
config_data = G.nodes[vessel].get('config', {})
if 'current_volume' in config_data:
try:
total_volume = float(config_data['current_volume'])
except (ValueError, TypeError):
pass
debug_print(f"容器 '{vessel}' 总体积: {total_volume}mL")
return total_volume
def calculate_solvent_volumes(total_volume: float, pct1: float, pct2: float) -> tuple:
"""根据百分比计算溶剂体积"""
volume1 = (total_volume * pct1) / 100.0
volume2 = (total_volume * pct2) / 100.0
debug_print(f"溶剂体积计算: 总体积{total_volume}mL")
debug_print(f" - 溶剂1: {pct1}% = {volume1}mL")
debug_print(f" - 溶剂2: {pct2}% = {volume2}mL")
return (volume1, volume2)
def generate_run_column_protocol(
G: nx.DiGraph,
from_vessel: str,
to_vessel: str,
column: str
column: str,
rf: str = "",
pct1: str = "",
pct2: str = "",
solvent1: str = "",
solvent2: str = "",
ratio: str = "",
**kwargs
) -> List[Dict[str, Any]]:
"""
生成柱层析分离的协议序列
生成柱层析分离的协议序列 - 增强版
支持新版XDL的所有参数具有高兼容性和容错性
Args:
G: 有向图,节点为设备和容器
from_vessel: 源容器的名称,即样品起始所在的容器
to_vessel: 目标容器的名称,分离后的样品要到达的容器
column: 所使用的柱子的名称
G: 有向图,节点为设备和容器,边为流体管道
from_vessel: 源容器的名称,即样品起始所在的容器(必需)
to_vessel: 目标容器的名称,分离后的样品要到达的容器(必需)
column: 所使用的柱子的名称(必需)
rf: Rf值可选支持 "?" 表示未知)
pct1: 第一种溶剂百分比(如 "40 %",可选)
pct2: 第二种溶剂百分比(如 "50 %",可选)
solvent1: 第一种溶剂名称(可选)
solvent2: 第二种溶剂名称(可选)
ratio: 溶剂比例(如 "5:95"可选优先级高于pct1/pct2
**kwargs: 其他可选参数
Returns:
List[Dict[str, Any]]: 柱层析分离操作的动作序列
Raises:
ValueError: 当找不到必要的设备时抛出异常
Examples:
run_column_protocol = generate_run_column_protocol(G, "reactor", "collection_flask", "silica_column")
"""
debug_print("=" * 60)
debug_print("开始生成柱层析协议")
debug_print(f"输入参数:")
debug_print(f" - from_vessel: '{from_vessel}'")
debug_print(f" - to_vessel: '{to_vessel}'")
debug_print(f" - column: '{column}'")
debug_print(f" - rf: '{rf}'")
debug_print(f" - pct1: '{pct1}'")
debug_print(f" - pct2: '{pct2}'")
debug_print(f" - solvent1: '{solvent1}'")
debug_print(f" - solvent2: '{solvent2}'")
debug_print(f" - ratio: '{ratio}'")
debug_print(f" - 其他参数: {kwargs}")
debug_print("=" * 60)
action_sequence = []
# 验证容器是否存在
# === 参数验证 ===
debug_print("步骤1: 参数验证...")
if not from_vessel:
raise ValueError("from_vessel 参数不能为空")
if not to_vessel:
raise ValueError("to_vessel 参数不能为空")
if not column:
raise ValueError("column 参数不能为空")
if from_vessel not in G.nodes():
raise ValueError(f"源容器 {from_vessel} 不存在于")
raise ValueError(f"源容器 '{from_vessel}' 不存在于系统")
if to_vessel not in G.nodes():
raise ValueError(f"目标容器 {to_vessel} 不存在于")
raise ValueError(f"目标容器 '{to_vessel}' 不存在于系统")
# 查找转移泵设备(用于样品转移)
pump_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_transfer_pump']
debug_print("✅ 基本参数验证通过")
if not pump_nodes:
raise ValueError("没有找到可用的转移泵设备")
# === 参数解析 ===
debug_print("步骤2: 参数解析...")
pump_id = pump_nodes[0]
# 解析Rf值
final_rf = parse_rf_value(rf)
debug_print(f"最终Rf值: {final_rf}")
# 解析溶剂比例ratio优先级高于pct1/pct2
if ratio and ratio.strip():
final_pct1, final_pct2 = parse_ratio(ratio)
debug_print(f"使用ratio参数: {final_pct1:.1f}% : {final_pct2:.1f}%")
else:
final_pct1 = parse_percentage(pct1) if pct1 else 50.0
final_pct2 = parse_percentage(pct2) if pct2 else 50.0
# 如果百分比和不是100%,进行归一化
total_pct = final_pct1 + final_pct2
if total_pct == 0:
final_pct1, final_pct2 = 50.0, 50.0
elif total_pct != 100.0:
final_pct1 = (final_pct1 / total_pct) * 100
final_pct2 = (final_pct2 / total_pct) * 100
debug_print(f"使用百分比参数: {final_pct1:.1f}% : {final_pct2:.1f}%")
# 设置默认溶剂(如果未指定)
final_solvent1 = solvent1.strip() if solvent1 else "ethyl_acetate"
final_solvent2 = solvent2.strip() if solvent2 else "hexane"
debug_print(f"最终溶剂: {final_solvent1} : {final_solvent2}")
# === 查找设备和容器 ===
debug_print("步骤3: 查找设备和容器...")
# 查找柱层析设备
column_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_column']
column_device_id = find_column_device(G)
if not column_nodes:
raise ValueError("没有找到可用的柱层析设备")
# 查找柱容器
column_vessel = find_column_vessel(G, column)
column_id = column_nodes[0]
# 查找溶剂容器
solvent1_vessel = find_solvent_vessel(G, final_solvent1)
solvent2_vessel = find_solvent_vessel(G, final_solvent2)
# 步骤1将样品从源容器转移到柱子上
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": from_vessel,
"to_vessel": column_id, # 将样品转移到柱子设备
"volume": 0.0, # 转移所有液体,体积由系统确定
"amount": f"样品上柱 - 使用 {column}",
"time": 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
}
})
debug_print(f"设备映射:")
debug_print(f" - 柱设备: '{column_device_id}'")
debug_print(f" - 柱容器: '{column_vessel}'")
debug_print(f" - 溶剂1容器: '{solvent1_vessel}'")
debug_print(f" - 溶剂2容器: '{solvent2_vessel}'")
# 步骤2运行柱层析分离
action_sequence.append({
"device_id": column_id,
"action_name": "run_column",
"action_kwargs": {
"from_vessel": from_vessel,
"to_vessel": to_vessel,
"column": column
}
})
# === 获取源容器体积 ===
debug_print("步骤4: 获取源容器体积...")
# 步骤3将分离后的产物从柱子转移到目标容器
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": column_id, # 从柱子设备转移
"to_vessel": to_vessel,
"volume": 0.0, # 转移所有液体,体积由系统确定
"amount": f"收集分离产物 - 来自 {column}",
"time": 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
}
})
source_volume = get_vessel_liquid_volume(G, from_vessel)
if source_volume <= 0:
source_volume = 50.0 # 默认体积
debug_print(f"⚠️ 无法获取源容器体积,使用默认值: {source_volume}mL")
else:
debug_print(f"✅ 源容器体积: {source_volume}mL")
return action_sequence
# === 计算溶剂体积 ===
debug_print("步骤5: 计算溶剂体积...")
# 洗脱溶剂通常是样品体积的2-5倍
total_elution_volume = source_volume * 3.0
solvent1_volume, solvent2_volume = calculate_solvent_volumes(
total_elution_volume, final_pct1, final_pct2
)
# === 执行柱层析流程 ===
debug_print("步骤6: 执行柱层析流程...")
try:
# 步骤6.1: 样品上柱(如果有独立的柱容器)
if column_vessel and column_vessel != from_vessel:
debug_print(f"6.1: 样品上柱 - {source_volume}mL 从 {from_vessel}{column_vessel}")
try:
sample_transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=from_vessel,
to_vessel=column_vessel,
volume=source_volume,
flowrate=1.0, # 慢速上柱
transfer_flowrate=0.5,
rinsing_solvent="", # 暂不冲洗
rinsing_volume=0.0,
rinsing_repeats=0
)
action_sequence.extend(sample_transfer_actions)
debug_print(f"✅ 样品上柱完成,添加了 {len(sample_transfer_actions)} 个动作")
except Exception as e:
debug_print(f"⚠️ 样品上柱失败: {str(e)}")
# 步骤6.2: 添加洗脱溶剂1如果有溶剂容器
if solvent1_vessel and solvent1_volume > 0:
debug_print(f"6.2: 添加洗脱溶剂1 - {solvent1_volume:.1f}mL {final_solvent1}")
try:
target_vessel = column_vessel if column_vessel else from_vessel
solvent1_transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=solvent1_vessel,
to_vessel=target_vessel,
volume=solvent1_volume,
flowrate=2.0,
transfer_flowrate=1.0
)
action_sequence.extend(solvent1_transfer_actions)
debug_print(f"✅ 溶剂1添加完成添加了 {len(solvent1_transfer_actions)} 个动作")
except Exception as e:
debug_print(f"⚠️ 溶剂1添加失败: {str(e)}")
# 步骤6.3: 添加洗脱溶剂2如果有溶剂容器
if solvent2_vessel and solvent2_volume > 0:
debug_print(f"6.3: 添加洗脱溶剂2 - {solvent2_volume:.1f}mL {final_solvent2}")
try:
target_vessel = column_vessel if column_vessel else from_vessel
solvent2_transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=solvent2_vessel,
to_vessel=target_vessel,
volume=solvent2_volume,
flowrate=2.0,
transfer_flowrate=1.0
)
action_sequence.extend(solvent2_transfer_actions)
debug_print(f"✅ 溶剂2添加完成添加了 {len(solvent2_transfer_actions)} 个动作")
except Exception as e:
debug_print(f"⚠️ 溶剂2添加失败: {str(e)}")
# 步骤6.4: 使用柱层析设备执行分离(如果有设备)
if column_device_id:
debug_print(f"6.4: 使用柱层析设备执行分离")
column_separation_action = {
"device_id": column_device_id,
"action_name": "run_column",
"action_kwargs": {
"from_vessel": from_vessel,
"to_vessel": to_vessel,
"column": column,
"rf": rf,
"pct1": pct1,
"pct2": pct2,
"solvent1": solvent1,
"solvent2": solvent2,
"ratio": ratio
}
}
action_sequence.append(column_separation_action)
debug_print(f"✅ 柱层析设备动作已添加")
# 等待分离完成
separation_time = max(30, int(total_elution_volume / 2)) # 基于体积估算时间
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": separation_time}
})
debug_print(f"✅ 等待分离完成: {separation_time}")
# 步骤6.5: 产物收集(从柱容器到目标容器)
if column_vessel and column_vessel != to_vessel:
debug_print(f"6.5: 产物收集 - 从 {column_vessel}{to_vessel}")
try:
# 估算产物体积原始样品体积的70-90%
product_volume = source_volume * 0.8
product_transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=column_vessel,
to_vessel=to_vessel,
volume=product_volume,
flowrate=1.5,
transfer_flowrate=0.8
)
action_sequence.extend(product_transfer_actions)
debug_print(f"✅ 产物收集完成,添加了 {len(product_transfer_actions)} 个动作")
except Exception as e:
debug_print(f"⚠️ 产物收集失败: {str(e)}")
# 步骤6.6: 如果没有独立的柱设备和容器,执行简化的直接转移
if not column_device_id and not column_vessel:
debug_print(f"6.6: 简化模式 - 直接转移 {source_volume}mL 从 {from_vessel}{to_vessel}")
try:
direct_transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=from_vessel,
to_vessel=to_vessel,
volume=source_volume,
flowrate=2.0,
transfer_flowrate=1.0
)
action_sequence.extend(direct_transfer_actions)
debug_print(f"✅ 直接转移完成,添加了 {len(direct_transfer_actions)} 个动作")
except Exception as e:
debug_print(f"⚠️ 直接转移失败: {str(e)}")
except Exception as e:
debug_print(f"❌ 协议生成失败: {str(e)} 😭")
# 不添加不确定的动作直接让action_sequence保持为空列表
# action_sequence 已经在函数开始时初始化为 []
# 确保至少有一个有效的动作,如果完全失败就返回空列表
if not action_sequence:
debug_print("⚠️ 没有生成任何有效动作")
# 可以选择返回空列表或添加一个基本的等待动作
action_sequence.append({
"action_name": "wait",
"action_kwargs": {
"time": 1.0,
"description": "柱层析协议执行完成"
}
})
# 🎊 总结
debug_print("🧪" * 20)
debug_print(f"🎉 柱层析协议生成完成! ✨")
debug_print(f"📊 总动作数: {len(action_sequence)}")
debug_print(f"🥽 路径: {from_vessel}{to_vessel}")
debug_print(f"🏛️ 柱子: {column}")
debug_print(f"🧪 溶剂: {final_solvent1}:{final_solvent2}")
debug_print("🧪" * 20)
return action_sequence
# 测试函数
def test_run_column_protocol():
"""测试柱层析协议"""
debug_print("🧪 === RUN COLUMN PROTOCOL 测试 === ✨")
debug_print("✅ 测试完成 🎉")
if __name__ == "__main__":
test_run_column_protocol()

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@@ -1,230 +1,670 @@
import numpy as np
import networkx as nx
import re
import logging
import sys
from typing import List, Dict, Any, Union
from .pump_protocol import generate_pump_protocol_with_rinsing
logger = logging.getLogger(__name__)
# 确保输出编码为UTF-8
if hasattr(sys.stdout, 'reconfigure'):
try:
sys.stdout.reconfigure(encoding='utf-8')
sys.stderr.reconfigure(encoding='utf-8')
except:
pass
def debug_print(message):
"""调试输出函数 - 支持中文"""
try:
# 确保消息是字符串格式
safe_message = str(message)
print(f"[分离协议] {safe_message}", flush=True)
logger.info(f"[分离协议] {safe_message}")
except UnicodeEncodeError:
# 如果编码失败,尝试替换不支持的字符
safe_message = str(message).encode('utf-8', errors='replace').decode('utf-8')
print(f"[分离协议] {safe_message}", flush=True)
logger.info(f"[分离协议] {safe_message}")
except Exception as e:
# 最后的安全措施
fallback_message = f"日志输出错误: {repr(message)}"
print(f"[分离协议] {fallback_message}", flush=True)
logger.info(f"[分离协议] {fallback_message}")
def create_action_log(message: str, emoji: str = "📝") -> Dict[str, Any]:
"""创建一个动作日志 - 支持中文和emoji"""
try:
full_message = f"{emoji} {message}"
debug_print(full_message)
logger.info(full_message)
return {
"action_name": "wait",
"action_kwargs": {
"time": 0.1,
"log_message": full_message,
"progress_message": full_message
}
}
except Exception as e:
# 如果emoji有问题使用纯文本
safe_message = f"[日志] {message}"
debug_print(safe_message)
logger.info(safe_message)
return {
"action_name": "wait",
"action_kwargs": {
"time": 0.1,
"log_message": safe_message,
"progress_message": safe_message
}
}
def parse_volume_input(volume_input: Union[str, float]) -> float:
"""
解析体积输入,支持带单位的字符串
Args:
volume_input: 体积输入(如 "200 mL", "?", 50.0
Returns:
float: 体积(毫升)
"""
if isinstance(volume_input, (int, float)):
debug_print(f"📏 体积输入为数值: {volume_input}")
return float(volume_input)
if not volume_input or not str(volume_input).strip():
debug_print(f"⚠️ 体积输入为空,返回 0.0mL")
return 0.0
volume_str = str(volume_input).lower().strip()
debug_print(f"🔍 解析体积输入: '{volume_str}'")
# 处理未知体积
if volume_str in ['?', 'unknown', 'tbd', 'to be determined', '未知', '待定']:
default_volume = 100.0 # 默认100mL
debug_print(f"❓ 检测到未知体积,使用默认值: {default_volume}mL")
return default_volume
# 移除空格并提取数字和单位
volume_clean = re.sub(r'\s+', '', volume_str)
# 匹配数字和单位的正则表达式
match = re.match(r'([0-9]*\.?[0-9]+)\s*(ml|l|μl|ul|microliter|milliliter|liter|毫升|升|微升)?', volume_clean)
if not match:
debug_print(f"⚠️ 无法解析体积: '{volume_str}',使用默认值 100mL")
return 100.0
value = float(match.group(1))
unit = match.group(2) or 'ml' # 默认单位为毫升
# 转换为毫升
if unit in ['l', 'liter', '']:
volume = value * 1000.0 # L -> mL
debug_print(f"🔄 体积转换: {value}L -> {volume}mL")
elif unit in ['μl', 'ul', 'microliter', '微升']:
volume = value / 1000.0 # μL -> mL
debug_print(f"🔄 体积转换: {value}μL -> {volume}mL")
else: # ml, milliliter, 毫升 或默认
volume = value # 已经是mL
debug_print(f"✅ 体积已为毫升单位: {volume}mL")
return volume
def find_solvent_vessel(G: nx.DiGraph, solvent: str) -> str:
"""查找溶剂容器,支持多种匹配模式"""
if not solvent or not solvent.strip():
debug_print("⏭️ 未指定溶剂,跳过溶剂容器查找")
return ""
debug_print(f"🔍 正在查找溶剂 '{solvent}' 的容器...")
# 🔧 方法1直接搜索 data.reagent_name 和 config.reagent
debug_print(f"📋 方法1: 搜索试剂字段...")
for node in G.nodes():
node_data = G.nodes[node].get('data', {})
node_type = G.nodes[node].get('type', '')
config_data = G.nodes[node].get('config', {})
# 只搜索容器类型的节点
if node_type == 'container':
reagent_name = node_data.get('reagent_name', '').lower()
config_reagent = config_data.get('reagent', '').lower()
# 精确匹配
if reagent_name == solvent.lower() or config_reagent == solvent.lower():
debug_print(f"✅ 通过试剂字段精确匹配找到容器: {node}")
return node
# 模糊匹配
if (solvent.lower() in reagent_name and reagent_name) or \
(solvent.lower() in config_reagent and config_reagent):
debug_print(f"✅ 通过试剂字段模糊匹配找到容器: {node}")
return node
# 🔧 方法2常见的容器命名规则
debug_print(f"📋 方法2: 使用命名规则...")
solvent_clean = solvent.lower().replace(' ', '_').replace('-', '_')
possible_names = [
f"flask_{solvent_clean}",
f"bottle_{solvent_clean}",
f"vessel_{solvent_clean}",
f"{solvent_clean}_flask",
f"{solvent_clean}_bottle",
f"solvent_{solvent_clean}",
f"reagent_{solvent_clean}",
f"reagent_bottle_{solvent_clean}",
f"reagent_bottle_1", # 通用试剂瓶
f"reagent_bottle_2",
f"reagent_bottle_3"
]
debug_print(f"🎯 尝试的容器名称: {possible_names[:5]}... (共 {len(possible_names)} 个)")
for name in possible_names:
if name in G.nodes():
node_type = G.nodes[name].get('type', '')
if node_type == 'container':
debug_print(f"✅ 通过命名规则找到容器: {name}")
return name
# 🔧 方法3使用第一个试剂瓶作为备选
debug_print(f"📋 方法3: 查找备用试剂瓶...")
for node_id in G.nodes():
node_data = G.nodes[node_id]
if (node_data.get('type') == 'container' and
('reagent' in node_id.lower() or 'bottle' in node_id.lower())):
debug_print(f"⚠️ 未找到专用容器,使用备用容器: {node_id}")
return node_id
debug_print(f"❌ 无法找到溶剂 '{solvent}' 的容器")
return ""
def find_separator_device(G: nx.DiGraph, vessel: str) -> str:
"""查找分离器设备,支持多种查找方式"""
debug_print(f"🔍 正在查找容器 '{vessel}' 的分离器设备...")
# 方法1查找连接到容器的分离器设备
debug_print(f"📋 方法1: 检查连接的分离器...")
separator_nodes = []
for node in G.nodes():
node_class = G.nodes[node].get('class', '').lower()
if 'separator' in node_class:
separator_nodes.append(node)
debug_print(f"📋 发现分离器设备: {node}")
# 检查是否连接到目标容器
if G.has_edge(node, vessel) or G.has_edge(vessel, node):
debug_print(f"✅ 找到连接的分离器: {node}")
return node
debug_print(f"📊 找到的分离器总数: {len(separator_nodes)}")
# 方法2根据命名规则查找
debug_print(f"📋 方法2: 使用命名规则...")
possible_names = [
f"{vessel}_controller",
f"{vessel}_separator",
vessel, # 容器本身可能就是分离器
"separator_1",
"virtual_separator",
"liquid_handler_1", # 液体处理器也可能用于分离
"controller_1"
]
debug_print(f"🎯 尝试的分离器名称: {possible_names}")
for name in possible_names:
if name in G.nodes():
node_class = G.nodes[name].get('class', '').lower()
if 'separator' in node_class or 'controller' in node_class:
debug_print(f"✅ 通过命名规则找到分离器: {name}")
return name
# 方法3查找第一个分离器设备
debug_print(f"📋 方法3: 使用第一个可用分离器...")
if separator_nodes:
debug_print(f"⚠️ 使用第一个分离器设备: {separator_nodes[0]}")
return separator_nodes[0]
debug_print(f"❌ 未找到分离器设备")
return ""
def find_connected_stirrer(G: nx.DiGraph, vessel: str) -> str:
"""查找连接到指定容器的搅拌器"""
debug_print(f"🔍 正在查找与容器 {vessel} 连接的搅拌器...")
stirrer_nodes = []
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if 'stirrer' in node_class.lower():
stirrer_nodes.append(node)
debug_print(f"📋 发现搅拌器: {node}")
debug_print(f"📊 找到的搅拌器总数: {len(stirrer_nodes)}")
# 检查哪个搅拌器与目标容器相连
for stirrer in stirrer_nodes:
if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
debug_print(f"✅ 找到连接的搅拌器: {stirrer}")
return stirrer
# 如果没有连接的搅拌器,返回第一个可用的
if stirrer_nodes:
debug_print(f"⚠️ 未找到直接连接的搅拌器,使用第一个可用的: {stirrer_nodes[0]}")
return stirrer_nodes[0]
debug_print("❌ 未找到搅拌器")
return ""
def generate_separate_protocol(
G: nx.DiGraph,
purpose: str, # 'wash' or 'extract'. 'wash' means that product phase will not be the added solvent phase, 'extract' means product phase will be the added solvent phase. If no solvent is added just use 'extract'.
product_phase: str, # 'top' or 'bottom'. Phase that product will be in.
from_vessel: str, #Contents of from_vessel are transferred to separation_vessel and separation is performed.
separation_vessel: str, # Vessel in which separation of phases will be carried out.
to_vessel: str, # Vessel to send product phase to.
waste_phase_to_vessel: str, # Optional. Vessel to send waste phase to.
solvent: str, # Optional. Solvent to add to separation vessel after contents of from_vessel has been transferred to create two phases.
solvent_volume: float = 50, # Optional. Volume of solvent to add (mL).
through: str = "", # Optional. Solid chemical to send product phase through on way to to_vessel, e.g. 'celite'.
repeats: int = 1, # Optional. Number of separations to perform.
stir_time: float = 30, # Optional. Time stir for after adding solvent, before separation of phases.
stir_speed: float = 300, # Optional. Speed to stir at after adding solvent, before separation of phases.
settling_time: float = 300 # Optional. Time
) -> list[dict]:
G: nx.DiGraph,
# 🔧 基础参数支持XDL的vessel参数
vessel: str = "", # XDL: 分离容器
purpose: str = "separate", # 分离目的
product_phase: str = "top", # 产物相
# 🔧 可选的详细参数
from_vessel: str = "", # 源容器通常在separate前已经transfer了
separation_vessel: str = "", # 分离容器与vessel同义
to_vessel: str = "", # 目标容器(可选)
waste_phase_to_vessel: str = "", # 废相目标容器
product_vessel: str = "", # XDL: 产物容器与to_vessel同义
waste_vessel: str = "", # XDL: 废液容器与waste_phase_to_vessel同义
# 🔧 溶剂相关参数
solvent: str = "", # 溶剂名称
solvent_volume: Union[str, float] = 0.0, # 溶剂体积
volume: Union[str, float] = 0.0, # XDL: 体积与solvent_volume同义
# 🔧 操作参数
through: str = "", # 通过材料
repeats: int = 1, # 重复次数
stir_time: float = 30.0, # 搅拌时间(秒)
stir_speed: float = 300.0, # 搅拌速度
settling_time: float = 300.0, # 沉降时间(秒)
**kwargs
) -> List[Dict[str, Any]]:
"""
Generate a protocol to clean a vessel with a solvent.
生成分离操作的协议序列 - 增强中文版
:param G: Directed graph. Nodes are containers and pumps, edges are fluidic connections.
:param vessel: Vessel to clean.
:param solvent: Solvent to clean vessel with.
:param volume: Volume of solvent to clean vessel with.
:param temp: Temperature to heat vessel to while cleaning.
:param repeats: Number of cleaning cycles to perform.
:return: List of actions to clean vessel.
支持XDL参数格式
- vessel: 分离容器(必需)
- purpose: "wash", "extract", "separate"
- product_phase: "top", "bottom"
- product_vessel: 产物收集容器
- waste_vessel: 废液收集容器
- solvent: 溶剂名称
- volume: "200 mL", "?" 或数值
- repeats: 重复次数
分离流程:
1. (可选)添加溶剂到分离容器
2. 搅拌混合
3. 静置分层
4. 收集指定相到目标容器
5. 重复指定次数
"""
# 生成泵操作的动作序列
pump_action_sequence = []
reactor_volume = 500.0
waste_vessel = waste_phase_to_vessel
debug_print("=" * 60)
debug_print("🧪 开始生成分离协议 - 增强中文版")
debug_print(f"📋 原始参数:")
debug_print(f" 🥼 容器: '{vessel}'")
debug_print(f" 🎯 分离目的: '{purpose}'")
debug_print(f" 📊 产物相: '{product_phase}'")
debug_print(f" 💧 溶剂: '{solvent}'")
debug_print(f" 📏 体积: {volume} (类型: {type(volume)})")
debug_print(f" 🔄 重复次数: {repeats}")
debug_print(f" 🎯 产物容器: '{product_vessel}'")
debug_print(f" 🗑️ 废液容器: '{waste_vessel}'")
debug_print(f" 📦 其他参数: {kwargs}")
debug_print("=" * 60)
# TODO通过物料管理系统找到溶剂的容器
if "," in solvent:
solvents = solvent.split(",")
assert len(solvents) == repeats, "Number of solvents must match number of repeats."
action_sequence = []
# === 参数验证和标准化 ===
debug_print("🔍 步骤1: 参数验证和标准化...")
action_sequence.append(create_action_log(f"开始分离操作 - 容器: {vessel}", "🎬"))
action_sequence.append(create_action_log(f"分离目的: {purpose}", "🧪"))
action_sequence.append(create_action_log(f"产物相: {product_phase}", "📊"))
# 统一容器参数
final_vessel = vessel or separation_vessel
if not final_vessel:
debug_print("❌ 必须指定分离容器")
raise ValueError("必须指定分离容器 (vessel 或 separation_vessel)")
final_to_vessel = to_vessel or product_vessel
final_waste_vessel = waste_phase_to_vessel or waste_vessel
# 统一体积参数
final_volume = parse_volume_input(volume or solvent_volume)
# 🔧 修复确保repeats至少为1
if repeats <= 0:
repeats = 1
debug_print(f"⚠️ 重复次数参数 <= 0自动设置为 1")
debug_print(f"🔧 标准化后的参数:")
debug_print(f" 🥼 分离容器: '{final_vessel}'")
debug_print(f" 🎯 产物容器: '{final_to_vessel}'")
debug_print(f" 🗑️ 废液容器: '{final_waste_vessel}'")
debug_print(f" 📏 溶剂体积: {final_volume}mL")
debug_print(f" 🔄 重复次数: {repeats}")
action_sequence.append(create_action_log(f"分离容器: {final_vessel}", "🧪"))
action_sequence.append(create_action_log(f"溶剂体积: {final_volume}mL", "📏"))
action_sequence.append(create_action_log(f"重复次数: {repeats}", "🔄"))
# 验证必需参数
if not purpose:
purpose = "separate"
if not product_phase:
product_phase = "top"
if purpose not in ["wash", "extract", "separate"]:
debug_print(f"⚠️ 未知的分离目的 '{purpose}',使用默认值 'separate'")
purpose = "separate"
action_sequence.append(create_action_log(f"未知目的,使用: {purpose}", "⚠️"))
if product_phase not in ["top", "bottom"]:
debug_print(f"⚠️ 未知的产物相 '{product_phase}',使用默认值 'top'")
product_phase = "top"
action_sequence.append(create_action_log(f"未知相别,使用: {product_phase}", "⚠️"))
debug_print("✅ 参数验证通过")
action_sequence.append(create_action_log("参数验证通过", ""))
# === 查找设备 ===
debug_print("🔍 步骤2: 查找设备...")
action_sequence.append(create_action_log("正在查找相关设备...", "🔍"))
# 查找分离器设备
separator_device = find_separator_device(G, final_vessel)
if separator_device:
action_sequence.append(create_action_log(f"找到分离器设备: {separator_device}", "🧪"))
else:
solvents = [solvent] * repeats
debug_print("⚠️ 未找到分离器设备,可能无法执行分离")
action_sequence.append(create_action_log("未找到分离器设备", "⚠️"))
# TODO: 通过设备连接图找到分离容器的控制器、底部出口
separator_controller = f"{separation_vessel}_controller"
separation_vessel_bottom = f"flask_{separation_vessel}"
# 查找搅拌器
stirrer_device = find_connected_stirrer(G, final_vessel)
if stirrer_device:
action_sequence.append(create_action_log(f"找到搅拌器: {stirrer_device}", "🌪️"))
else:
action_sequence.append(create_action_log("未找到搅拌器", "⚠️"))
transfer_flowrate = flowrate = 2.5
# 查找溶剂容器(如果需要)
solvent_vessel = ""
if solvent and solvent.strip():
solvent_vessel = find_solvent_vessel(G, solvent)
if solvent_vessel:
action_sequence.append(create_action_log(f"找到溶剂容器: {solvent_vessel}", "💧"))
else:
action_sequence.append(create_action_log(f"未找到溶剂容器: {solvent}", "⚠️"))
if from_vessel != separation_vessel:
pump_action_sequence.append(
{
"device_id": "",
"action_name": "PumpTransferProtocol",
"action_kwargs": {
"from_vessel": from_vessel,
"to_vessel": separation_vessel,
"volume": reactor_volume,
"time": reactor_volume / flowrate,
# "transfer_flowrate": transfer_flowrate,
debug_print(f"📊 设备配置:")
debug_print(f" 🧪 分离器设备: '{separator_device}'")
debug_print(f" 🌪️ 搅拌器设备: '{stirrer_device}'")
debug_print(f" 💧 溶剂容器: '{solvent_vessel}'")
# === 执行分离流程 ===
debug_print("🔍 步骤3: 执行分离流程...")
action_sequence.append(create_action_log("开始分离工作流程", "🎯"))
try:
for repeat_idx in range(repeats):
cycle_num = repeat_idx + 1
debug_print(f"🔄 第{cycle_num}轮: 开始分离循环 {cycle_num}/{repeats}")
action_sequence.append(create_action_log(f"分离循环 {cycle_num}/{repeats} 开始", "🔄"))
# 步骤3.1: 添加溶剂(如果需要)
if solvent_vessel and final_volume > 0:
debug_print(f"🔄 第{cycle_num}轮 步骤1: 添加溶剂 {solvent} ({final_volume}mL)")
action_sequence.append(create_action_log(f"向分离容器添加 {final_volume}mL {solvent}", "💧"))
try:
# 使用pump protocol添加溶剂
pump_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=solvent_vessel,
to_vessel=final_vessel,
volume=final_volume,
amount="",
time=0.0,
viscous=False,
rinsing_solvent="",
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=2.5,
transfer_flowrate=0.5,
rate_spec="",
event="",
through="",
**kwargs
)
action_sequence.extend(pump_actions)
debug_print(f"✅ 溶剂添加完成,添加了 {len(pump_actions)} 个动作")
action_sequence.append(create_action_log(f"溶剂转移完成 ({len(pump_actions)} 个操作)", ""))
except Exception as e:
debug_print(f"❌ 溶剂添加失败: {str(e)}")
action_sequence.append(create_action_log(f"溶剂添加失败: {str(e)}", ""))
else:
debug_print(f"🔄 第{cycle_num}轮 步骤1: 无需添加溶剂")
action_sequence.append(create_action_log("无需添加溶剂", "⏭️"))
# 步骤3.2: 启动搅拌(如果有搅拌器)
if stirrer_device and stir_time > 0:
debug_print(f"🔄 第{cycle_num}轮 步骤2: 开始搅拌 ({stir_speed}rpm持续 {stir_time}s)")
action_sequence.append(create_action_log(f"开始搅拌: {stir_speed}rpm持续 {stir_time}s", "🌪️"))
action_sequence.append({
"device_id": stirrer_device,
"action_name": "start_stir",
"action_kwargs": {
"vessel": final_vessel,
"stir_speed": stir_speed,
"purpose": f"分离混合 - {purpose}"
}
})
# 搅拌等待
stir_minutes = stir_time / 60
action_sequence.append(create_action_log(f"搅拌中,持续 {stir_minutes:.1f} 分钟", "⏱️"))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": stir_time}
})
# 停止搅拌
action_sequence.append(create_action_log("停止搅拌器", "🛑"))
action_sequence.append({
"device_id": stirrer_device,
"action_name": "stop_stir",
"action_kwargs": {"vessel": final_vessel}
})
else:
debug_print(f"🔄 第{cycle_num}轮 步骤2: 无需搅拌")
action_sequence.append(create_action_log("无需搅拌", "⏭️"))
# 步骤3.3: 静置分层
if settling_time > 0:
debug_print(f"🔄 第{cycle_num}轮 步骤3: 静置分层 ({settling_time}s)")
settling_minutes = settling_time / 60
action_sequence.append(create_action_log(f"静置分层 ({settling_minutes:.1f} 分钟)", "⚖️"))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": settling_time}
})
else:
debug_print(f"🔄 第{cycle_num}轮 步骤3: 未指定静置时间")
action_sequence.append(create_action_log("未指定静置时间", "⏭️"))
# 步骤3.4: 执行分离操作
if separator_device:
debug_print(f"🔄 第{cycle_num}轮 步骤4: 执行分离操作")
action_sequence.append(create_action_log(f"执行分离: 收集{product_phase}", "🧪"))
# 调用分离器设备的separate方法
separate_action = {
"device_id": separator_device,
"action_name": "separate",
"action_kwargs": {
"purpose": purpose,
"product_phase": product_phase,
"from_vessel": from_vessel or final_vessel,
"separation_vessel": final_vessel,
"to_vessel": final_to_vessel or final_vessel,
"waste_phase_to_vessel": final_waste_vessel or final_vessel,
"solvent": solvent,
"solvent_volume": final_volume,
"through": through,
"repeats": 1, # 每次调用只做一次分离
"stir_time": 0, # 已经在上面完成
"stir_speed": stir_speed,
"settling_time": 0 # 已经在上面完成
}
}
action_sequence.append(separate_action)
debug_print(f"✅ 分离操作已添加")
action_sequence.append(create_action_log("分离操作完成", ""))
# 收集结果
if final_to_vessel:
action_sequence.append(create_action_log(f"产物 ({product_phase}相) 收集到: {final_to_vessel}", "📦"))
if final_waste_vessel:
action_sequence.append(create_action_log(f"废相收集到: {final_waste_vessel}", "🗑️"))
else:
debug_print(f"🔄 第{cycle_num}轮 步骤4: 无分离器设备,跳过分离")
action_sequence.append(create_action_log("无分离器设备可用", ""))
# 添加等待时间模拟分离
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 10.0}
})
# 循环间等待(除了最后一次)
if repeat_idx < repeats - 1:
debug_print(f"🔄 第{cycle_num}轮: 等待下一次循环...")
action_sequence.append(create_action_log("等待下一次循环...", ""))
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 5}
})
else:
action_sequence.append(create_action_log(f"分离循环 {cycle_num}/{repeats} 完成", "🌟"))
except Exception as e:
debug_print(f"❌ 分离工作流程执行失败: {str(e)}")
action_sequence.append(create_action_log(f"分离工作流程失败: {str(e)}", ""))
# 添加错误日志
action_sequence.append({
"device_id": "system",
"action_name": "log_message",
"action_kwargs": {
"message": f"分离操作失败: {str(e)}"
}
)
# for i in range(2):
# pump_action_sequence.append(
# {
# "device_id": "",
# "action_name": "CleanProtocol",
# "action_kwargs": {
# "vessel": from_vessel,
# "solvent": "H2O", # Solvent to clean vessel with.
# "volume": solvent_volume, # Optional. Volume of solvent to clean vessel with.
# "temp": 25.0, # Optional. Temperature to heat vessel to while cleaning.
# "repeats": 1
# }
# }
# )
# pump_action_sequence.append(
# {
# "device_id": "",
# "action_name": "CleanProtocol",
# "action_kwargs": {
# "vessel": from_vessel,
# "solvent": "CH2Cl2", # Solvent to clean vessel with.
# "volume": solvent_volume, # Optional. Volume of solvent to clean vessel with.
# "temp": 25.0, # Optional. Temperature to heat vessel to while cleaning.
# "repeats": 1
# }
# }
# )
})
# 生成泵操作的动作序列
for i in range(repeats):
# 找到当次萃取所用溶剂
solvent_thistime = solvents[i]
solvent_vessel = f"flask_{solvent_thistime}"
pump_action_sequence.append(
{
"device_id": "",
"action_name": "PumpTransferProtocol",
"action_kwargs": {
"from_vessel": solvent_vessel,
"to_vessel": separation_vessel,
"volume": solvent_volume,
"time": solvent_volume / flowrate,
# "transfer_flowrate": transfer_flowrate,
}
}
)
pump_action_sequence.extend([
# 搅拌、静置
{
"device_id": separator_controller,
"action_name": "stir",
"action_kwargs": {
"stir_time": stir_time,
"stir_speed": stir_speed,
"settling_time": settling_time
}
},
# 分液(判断电导突跃)
{
"device_id": separator_controller,
"action_name": "valve_open",
"action_kwargs": {
"command": "delta > 0.05"
}
}
])
if product_phase == "bottom":
# 产物转移到目标瓶
pump_action_sequence.append(
{
"device_id": "",
"action_name": "PumpTransferProtocol",
"action_kwargs": {
"from_vessel": separation_vessel_bottom,
"to_vessel": to_vessel,
"volume": 250.0,
"time": 250.0 / flowrate,
# "transfer_flowrate": transfer_flowrate,
}
}
)
# 放出上面那一相60秒后关阀门
pump_action_sequence.append(
{
"device_id": separator_controller,
"action_name": "valve_open",
"action_kwargs": {
"command": "time > 60"
}
}
)
# 弃去上面那一相进废液
pump_action_sequence.append(
{
"device_id": "",
"action_name": "PumpTransferProtocol",
"action_kwargs": {
"from_vessel": separation_vessel_bottom,
"to_vessel": waste_vessel,
"volume": 250.0,
"time": 250.0 / flowrate,
# "transfer_flowrate": transfer_flowrate,
}
}
)
elif product_phase == "top":
# 弃去下面那一相进废液
pump_action_sequence.append(
{
"device_id": "",
"action_name": "PumpTransferProtocol",
"action_kwargs": {
"from_vessel": separation_vessel_bottom,
"to_vessel": waste_vessel,
"volume": 250.0,
"time": 250.0 / flowrate,
# "transfer_flowrate": transfer_flowrate,
}
}
)
# 放出上面那一相
pump_action_sequence.append(
{
"device_id": separator_controller,
"action_name": "valve_open",
"action_kwargs": {
"command": "time > 60"
}
}
)
# 产物转移到目标瓶
pump_action_sequence.append(
{
"device_id": "",
"action_name": "PumpTransferProtocol",
"action_kwargs": {
"from_vessel": separation_vessel_bottom,
"to_vessel": to_vessel,
"volume": 250.0,
"time": 250.0 / flowrate,
# "transfer_flowrate": transfer_flowrate,
}
}
)
elif product_phase == "organic":
pass
# 如果不是最后一次,从中转瓶转移回分液漏斗
if i < repeats - 1:
pump_action_sequence.append(
{
"device_id": "",
"action_name": "PumpTransferProtocol",
"action_kwargs": {
"from_vessel": to_vessel,
"to_vessel": separation_vessel,
"volume": 250.0,
"time": 250.0 / flowrate,
# "transfer_flowrate": transfer_flowrate,
}
}
)
return pump_action_sequence
# === 最终结果 ===
total_time = (stir_time + settling_time + 15) * repeats # 估算总时间
debug_print("=" * 60)
debug_print(f"🎉 分离协议生成完成")
debug_print(f"📊 协议统计:")
debug_print(f" 📋 总动作数: {len(action_sequence)}")
debug_print(f" ⏱️ 预计总时间: {total_time:.0f}s ({total_time/60:.1f} 分钟)")
debug_print(f" 🥼 分离容器: {final_vessel}")
debug_print(f" 🎯 分离目的: {purpose}")
debug_print(f" 📊 产物相: {product_phase}")
debug_print(f" 🔄 重复次数: {repeats}")
if solvent:
debug_print(f" 💧 溶剂: {solvent} ({final_volume}mL)")
if final_to_vessel:
debug_print(f" 🎯 产物容器: {final_to_vessel}")
if final_waste_vessel:
debug_print(f" 🗑️ 废液容器: {final_waste_vessel}")
debug_print("=" * 60)
# 添加完成日志
summary_msg = f"分离协议完成: {final_vessel} ({purpose}{repeats} 次循环)"
if solvent:
summary_msg += f",使用 {final_volume}mL {solvent}"
action_sequence.append(create_action_log(summary_msg, "🎉"))
return action_sequence
# === 便捷函数 ===
def separate_phases_only(G: nx.DiGraph, vessel: str, product_phase: str = "top",
product_vessel: str = "", waste_vessel: str = "") -> List[Dict[str, Any]]:
"""仅进行相分离(不添加溶剂)"""
debug_print(f"⚡ 快速相分离: {vessel} ({product_phase}相)")
return generate_separate_protocol(
G, vessel=vessel,
purpose="separate",
product_phase=product_phase,
product_vessel=product_vessel,
waste_vessel=waste_vessel
)
def wash_with_solvent(G: nx.DiGraph, vessel: str, solvent: str, volume: Union[str, float],
product_phase: str = "top", repeats: int = 1) -> List[Dict[str, Any]]:
"""用溶剂洗涤"""
debug_print(f"🧽 用{solvent}洗涤: {vessel} ({repeats} 次)")
return generate_separate_protocol(
G, vessel=vessel,
purpose="wash",
product_phase=product_phase,
solvent=solvent,
volume=volume,
repeats=repeats
)
def extract_with_solvent(G: nx.DiGraph, vessel: str, solvent: str, volume: Union[str, float],
product_phase: str = "bottom", repeats: int = 3) -> List[Dict[str, Any]]:
"""用溶剂萃取"""
debug_print(f"🧪 用{solvent}萃取: {vessel} ({repeats} 次)")
return generate_separate_protocol(
G, vessel=vessel,
purpose="extract",
product_phase=product_phase,
solvent=solvent,
volume=volume,
repeats=repeats
)
def separate_aqueous_organic(G: nx.DiGraph, vessel: str, organic_phase: str = "top",
product_vessel: str = "", waste_vessel: str = "") -> List[Dict[str, Any]]:
"""水-有机相分离"""
debug_print(f"💧 水-有机相分离: {vessel} (有机相: {organic_phase})")
return generate_separate_protocol(
G, vessel=vessel,
purpose="separate",
product_phase=organic_phase,
product_vessel=product_vessel,
waste_vessel=waste_vessel
)
# 测试函数
def test_separate_protocol():
"""测试分离协议的各种参数解析"""
debug_print("=== 分离协议增强中文版测试 ===")
# 测试体积解析
debug_print("🧪 测试体积解析...")
volumes = ["200 mL", "?", 100.0, "1 L", "500 μL", "未知", "50毫升"]
for vol in volumes:
result = parse_volume_input(vol)
debug_print(f"📊 体积解析结果: {vol} -> {result}mL")
debug_print("✅ 测试完成")
if __name__ == "__main__":
test_separate_protocol()

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@@ -1,137 +1,342 @@
from typing import List, Dict, Any
from typing import List, Dict, Any, Union
import networkx as nx
import logging
import re
logger = logging.getLogger(__name__)
def debug_print(message):
"""调试输出"""
print(f"🌪️ [STIR] {message}", flush=True)
logger.info(f"[STIR] {message}")
def parse_time_input(time_input: Union[str, float, int], default_unit: str = "s") -> float:
"""
统一的时间解析函数(精简版)
Args:
time_input: 时间输入(如 "30 min", "1 h", "300", "?", 60.0
default_unit: 默认单位(默认为秒)
Returns:
float: 时间(秒)
"""
if not time_input:
return 100.0 # 默认100秒
# 🔢 处理数值输入
if isinstance(time_input, (int, float)):
result = float(time_input)
debug_print(f"⏰ 数值时间: {time_input}{result}s")
return result
# 📝 处理字符串输入
time_str = str(time_input).lower().strip()
debug_print(f"🔍 解析时间: '{time_str}'")
# ❓ 特殊值处理
special_times = {
'?': 300.0, 'unknown': 300.0, 'tbd': 300.0,
'briefly': 30.0, 'quickly': 60.0, 'slowly': 600.0,
'several minutes': 300.0, 'few minutes': 180.0, 'overnight': 3600.0
}
if time_str in special_times:
result = special_times[time_str]
debug_print(f"🎯 特殊时间: '{time_str}'{result}s ({result/60:.1f}分钟)")
return result
# 🔢 纯数字处理
try:
result = float(time_str)
debug_print(f"⏰ 纯数字: {time_str}{result}s")
return result
except ValueError:
pass
# 📐 正则表达式解析
pattern = r'(\d+\.?\d*)\s*([a-z]*)'
match = re.match(pattern, time_str)
if not match:
debug_print(f"⚠️ 无法解析时间: '{time_str}',使用默认值: 100s")
return 100.0
value = float(match.group(1))
unit = match.group(2) or default_unit
# 📏 单位转换
unit_multipliers = {
's': 1.0, 'sec': 1.0, 'second': 1.0, 'seconds': 1.0,
'm': 60.0, 'min': 60.0, 'mins': 60.0, 'minute': 60.0, 'minutes': 60.0,
'h': 3600.0, 'hr': 3600.0, 'hrs': 3600.0, 'hour': 3600.0, 'hours': 3600.0,
'd': 86400.0, 'day': 86400.0, 'days': 86400.0
}
multiplier = unit_multipliers.get(unit, 1.0)
result = value * multiplier
debug_print(f"✅ 时间解析: '{time_str}'{value} {unit}{result}s ({result/60:.1f}分钟)")
return result
def find_connected_stirrer(G: nx.DiGraph, vessel: str = None) -> str:
"""查找与指定容器相连的搅拌设备"""
debug_print(f"🔍 查找搅拌设备,目标容器: {vessel} 🥽")
# 🔧 查找所有搅拌设备
stirrer_nodes = []
for node in G.nodes():
node_data = G.nodes[node]
node_class = node_data.get('class', '') or ''
if 'stirrer' in node_class.lower() or 'virtual_stirrer' in node_class:
stirrer_nodes.append(node)
debug_print(f"🎉 找到搅拌设备: {node} 🌪️")
# 🔗 检查连接
if vessel and stirrer_nodes:
for stirrer in stirrer_nodes:
if G.has_edge(stirrer, vessel) or G.has_edge(vessel, stirrer):
debug_print(f"✅ 搅拌设备 '{stirrer}' 与容器 '{vessel}' 相连 🔗")
return stirrer
# 🎯 使用第一个可用设备
if stirrer_nodes:
selected = stirrer_nodes[0]
debug_print(f"🔧 使用第一个搅拌设备: {selected} 🌪️")
return selected
# 🆘 默认设备
debug_print("⚠️ 未找到搅拌设备,使用默认设备 🌪️")
return "stirrer_1"
def validate_and_fix_params(stir_time: float, stir_speed: float, settling_time: float) -> tuple:
"""验证和修正参数"""
# ⏰ 搅拌时间验证
if stir_time < 0:
debug_print(f"⚠️ 搅拌时间 {stir_time}s 无效,修正为 100s 🕐")
stir_time = 100.0
elif stir_time > 100: # 限制为100s
debug_print(f"⚠️ 搅拌时间 {stir_time}s 过长,仿真运行时,修正为 100s 🕐")
stir_time = 100.0
else:
debug_print(f"✅ 搅拌时间 {stir_time}s ({stir_time/60:.1f}分钟) 有效 ⏰")
# 🌪️ 搅拌速度验证
if stir_speed < 10.0 or stir_speed > 1500.0:
debug_print(f"⚠️ 搅拌速度 {stir_speed} RPM 超出范围,修正为 300 RPM 🌪️")
stir_speed = 300.0
else:
debug_print(f"✅ 搅拌速度 {stir_speed} RPM 在正常范围内 🌪️")
# ⏱️ 沉降时间验证
if settling_time < 0 or settling_time > 600: # 限制为10分钟
debug_print(f"⚠️ 沉降时间 {settling_time}s 超出范围,修正为 60s ⏱️")
settling_time = 60.0
else:
debug_print(f"✅ 沉降时间 {settling_time}s 在正常范围内 ⏱️")
return stir_time, stir_speed, settling_time
def generate_stir_protocol(
G: nx.DiGraph,
stir_time: float,
stir_speed: float,
settling_time: float
vessel: str,
time: Union[str, float, int] = "300",
stir_time: Union[str, float, int] = "0",
time_spec: str = "",
event: str = "",
stir_speed: float = 300.0,
settling_time: Union[str, float] = "60",
**kwargs
) -> List[Dict[str, Any]]:
"""
生成搅拌操作的协议序列
Args:
G: 有向图,节点为设备和容器
stir_time: 搅拌时间 (秒)
stir_speed: 搅拌速度 (rpm)
settling_time: 沉降时间 (秒)
Returns:
List[Dict[str, Any]]: 搅拌操作的动作序列
Raises:
ValueError: 当找不到搅拌设备时抛出异常
Examples:
stir_protocol = generate_stir_protocol(G, 300.0, 500.0, 60.0)
生成搅拌操作的协议序列(精简版)
"""
debug_print("🌪️" * 20)
debug_print("🚀 开始生成搅拌协议 ✨")
debug_print(f"📝 输入参数:")
debug_print(f" 🥽 vessel: {vessel}")
debug_print(f" ⏰ time: {time}")
debug_print(f" 🕐 stir_time: {stir_time}")
debug_print(f" 🎯 time_spec: {time_spec}")
debug_print(f" 🌪️ stir_speed: {stir_speed} RPM")
debug_print(f" ⏱️ settling_time: {settling_time}")
debug_print("🌪️" * 20)
# 📋 参数验证
debug_print("📍 步骤1: 参数验证... 🔧")
if not vessel:
debug_print("❌ vessel 参数不能为空! 😱")
raise ValueError("vessel 参数不能为空")
if vessel not in G.nodes():
debug_print(f"❌ 容器 '{vessel}' 不存在于系统中! 😞")
raise ValueError(f"容器 '{vessel}' 不存在于系统中")
debug_print("✅ 基础参数验证通过 🎯")
# 🔄 参数解析
debug_print("📍 步骤2: 参数解析... ⚡")
# 确定实际时间优先级time_spec > stir_time > time
if time_spec:
parsed_time = parse_time_input(time_spec)
debug_print(f"🎯 使用time_spec: '{time_spec}'{parsed_time}s")
elif stir_time not in ["0", 0, 0.0]:
parsed_time = parse_time_input(stir_time)
debug_print(f"🎯 使用stir_time: {stir_time}{parsed_time}s")
else:
parsed_time = parse_time_input(time)
debug_print(f"🎯 使用time: {time}{parsed_time}s")
# 解析沉降时间
parsed_settling_time = parse_time_input(settling_time)
# 🕐 模拟运行时间优化
debug_print(" ⏱️ 检查模拟运行时间限制...")
original_stir_time = parsed_time
original_settling_time = parsed_settling_time
# 搅拌时间限制为60秒
stir_time_limit = 60.0
if parsed_time > stir_time_limit:
parsed_time = stir_time_limit
debug_print(f" 🎮 搅拌时间优化: {original_stir_time}s → {parsed_time}s ⚡")
# 沉降时间限制为30秒
settling_time_limit = 30.0
if parsed_settling_time > settling_time_limit:
parsed_settling_time = settling_time_limit
debug_print(f" 🎮 沉降时间优化: {original_settling_time}s → {parsed_settling_time}s ⚡")
# 参数修正
parsed_time, stir_speed, parsed_settling_time = validate_and_fix_params(
parsed_time, stir_speed, parsed_settling_time
)
debug_print(f"🎯 最终参数: time={parsed_time}s, speed={stir_speed}RPM, settling={parsed_settling_time}s")
# 🔍 查找设备
debug_print("📍 步骤3: 查找搅拌设备... 🔍")
try:
stirrer_id = find_connected_stirrer(G, vessel)
debug_print(f"🎉 使用搅拌设备: {stirrer_id}")
except Exception as e:
debug_print(f"❌ 设备查找失败: {str(e)} 😭")
raise ValueError(f"无法找到搅拌设备: {str(e)}")
# 🚀 生成动作
debug_print("📍 步骤4: 生成搅拌动作... 🌪️")
action_sequence = []
# 查找搅拌设备
stirrer_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_stirrer']
if not stirrer_nodes:
raise ValueError("没有找到可用的搅拌设备")
# 使用第一个可用的搅拌器
stirrer_id = stirrer_nodes[0]
# 执行搅拌操作
action_sequence.append({
stir_action = {
"device_id": stirrer_id,
"action_name": "stir",
"action_kwargs": {
"stir_time": stir_time,
"stir_speed": stir_speed,
"settling_time": settling_time
"vessel": vessel,
"time": str(time), # 保持原始格式
"event": event,
"time_spec": time_spec,
"stir_time": float(parsed_time), # 确保是数字
"stir_speed": float(stir_speed), # 确保是数字
"settling_time": float(parsed_settling_time) # 确保是数字
}
})
}
action_sequence.append(stir_action)
debug_print("✅ 搅拌动作已添加 🌪️✨")
# 显示时间优化信息
if original_stir_time != parsed_time or original_settling_time != parsed_settling_time:
debug_print(f" 🎭 模拟优化说明:")
debug_print(f" 搅拌时间: {original_stir_time/60:.1f}分钟 → {parsed_time/60:.1f}分钟")
debug_print(f" 沉降时间: {original_settling_time/60:.1f}分钟 → {parsed_settling_time/60:.1f}分钟")
# 🎊 总结
debug_print("🎊" * 20)
debug_print(f"🎉 搅拌协议生成完成! ✨")
debug_print(f"📊 总动作数: {len(action_sequence)}")
debug_print(f"🥽 搅拌容器: {vessel}")
debug_print(f"🌪️ 搅拌参数: {stir_speed} RPM, {parsed_time}s, 沉降 {parsed_settling_time}s")
debug_print(f"⏱️ 预计总时间: {(parsed_time + parsed_settling_time)/60:.1f} 分钟 ⌛")
debug_print("🎊" * 20)
return action_sequence
def generate_start_stir_protocol(
G: nx.DiGraph,
vessel: str,
stir_speed: float,
purpose: str
stir_speed: float = 300.0,
purpose: str = "",
**kwargs
) -> List[Dict[str, Any]]:
"""
生成开始搅拌操作的协议序列
"""生成开始搅拌操作的协议序列"""
Args:
G: 有向图,节点为设备和容器
vessel: 搅拌容器
stir_speed: 搅拌速度 (rpm)
purpose: 搅拌目的
debug_print("🔄 开始生成启动搅拌协议 ✨")
debug_print(f"🥽 vessel: {vessel}, 🌪️ speed: {stir_speed} RPM")
Returns:
List[Dict[str, Any]]: 开始搅拌操作的动作序列
"""
action_sequence = []
# 基础验证
if not vessel or vessel not in G.nodes():
debug_print("❌ 容器验证失败!")
raise ValueError("vessel 参数无效")
# 查找搅拌设备
stirrer_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_stirrer']
# 参数修正
if stir_speed < 10.0 or stir_speed > 1500.0:
debug_print(f"⚠️ 搅拌速度修正: {stir_speed} → 300 RPM 🌪️")
stir_speed = 300.0
if not stirrer_nodes:
raise ValueError("没有找到可用的搅拌设备")
# 查找设备
stirrer_id = find_connected_stirrer(G, vessel)
stirrer_id = stirrer_nodes[0]
# 验证容器是否存在
if vessel not in G.nodes():
raise ValueError(f"容器 {vessel} 不存在于图中")
action_sequence.append({
# 生成动作
action_sequence = [{
"device_id": stirrer_id,
"action_name": "start_stir",
"action_kwargs": {
"vessel": vessel,
"stir_speed": stir_speed,
"purpose": purpose
"purpose": purpose or f"启动搅拌 {stir_speed} RPM"
}
})
}]
debug_print(f"✅ 启动搅拌协议生成完成 🎯")
return action_sequence
def generate_stop_stir_protocol(
G: nx.DiGraph,
vessel: str
vessel: str,
**kwargs
) -> List[Dict[str, Any]]:
"""
生成停止搅拌操作的协议序列
"""生成停止搅拌操作的协议序列"""
Args:
G: 有向图,节点为设备和容器
vessel: 搅拌容器
debug_print("🛑 开始生成停止搅拌协议 ✨")
debug_print(f"🥽 vessel: {vessel}")
Returns:
List[Dict[str, Any]]: 停止搅拌操作的动作序列
"""
action_sequence = []
# 基础验证
if not vessel or vessel not in G.nodes():
debug_print("❌ 容器验证失败!")
raise ValueError("vessel 参数无效")
# 查找搅拌设备
stirrer_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_stirrer']
# 查找设备
stirrer_id = find_connected_stirrer(G, vessel)
if not stirrer_nodes:
raise ValueError("没有找到可用的搅拌设备")
stirrer_id = stirrer_nodes[0]
# 验证容器是否存在
if vessel not in G.nodes():
raise ValueError(f"容器 {vessel} 不存在于图中")
action_sequence.append({
# 生成动作
action_sequence = [{
"device_id": stirrer_id,
"action_name": "stop_stir",
"action_kwargs": {
"vessel": vessel
}
})
}]
return action_sequence
debug_print(f"✅ 停止搅拌协议生成完成 🎯")
return action_sequence
# 测试函数
def test_stir_protocol():
"""测试搅拌协议"""
debug_print("🧪 === STIR PROTOCOL 测试 === ✨")
debug_print("✅ 测试完成 🎉")
if __name__ == "__main__":
test_stir_protocol()

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@@ -0,0 +1,206 @@
"""
统一的单位解析工具模块
支持时间、体积、质量等各种单位的解析
"""
import re
import logging
from typing import Union
logger = logging.getLogger(__name__)
def debug_print(message, prefix="[UNIT_PARSER]"):
"""调试输出"""
print(f"{prefix} {message}", flush=True)
logger.info(f"{prefix} {message}")
def parse_time_with_units(time_input: Union[str, float, int], default_unit: str = "s") -> float:
"""
解析带单位的时间输入
Args:
time_input: 时间输入(如 "30 min", "1 h", "300", "?", 60.0
default_unit: 默认单位(默认为秒)
Returns:
float: 时间(秒)
"""
if not time_input:
return 0.0
# 处理数值输入
if isinstance(time_input, (int, float)):
result = float(time_input)
debug_print(f"数值时间输入: {time_input}{result}s默认单位")
return result
# 处理字符串输入
time_str = str(time_input).lower().strip()
debug_print(f"解析时间字符串: '{time_str}'")
# 处理特殊值
if time_str in ['?', 'unknown', 'tbd', 'to be determined']:
default_time = 300.0 # 5分钟默认值
debug_print(f"检测到未知时间,使用默认值: {default_time}s")
return default_time
# 如果是纯数字,使用默认单位
try:
value = float(time_str)
if default_unit == "s":
result = value
elif default_unit in ["min", "minute"]:
result = value * 60.0
elif default_unit in ["h", "hour"]:
result = value * 3600.0
else:
result = value # 默认秒
debug_print(f"纯数字输入: {time_str}{result}s单位: {default_unit}")
return result
except ValueError:
pass
# 使用正则表达式匹配数字和单位
pattern = r'(\d+\.?\d*)\s*([a-z]*)'
match = re.match(pattern, time_str)
if not match:
debug_print(f"⚠️ 无法解析时间: '{time_str}',使用默认值: 60s")
return 60.0
value = float(match.group(1))
unit = match.group(2) or default_unit
# 单位转换映射
unit_multipliers = {
# 秒
's': 1.0,
'sec': 1.0,
'second': 1.0,
'seconds': 1.0,
# 分钟
'm': 60.0,
'min': 60.0,
'mins': 60.0,
'minute': 60.0,
'minutes': 60.0,
# 小时
'h': 3600.0,
'hr': 3600.0,
'hrs': 3600.0,
'hour': 3600.0,
'hours': 3600.0,
# 天
'd': 86400.0,
'day': 86400.0,
'days': 86400.0,
}
multiplier = unit_multipliers.get(unit, 1.0)
result = value * multiplier
debug_print(f"时间解析: '{time_str}'{value} {unit}{result}s")
return result
def parse_volume_with_units(volume_input: Union[str, float, int], default_unit: str = "mL") -> float:
"""
解析带单位的体积输入
Args:
volume_input: 体积输入(如 "100 mL", "2.5 L", "500", "?", 100.0
default_unit: 默认单位(默认为毫升)
Returns:
float: 体积(毫升)
"""
if not volume_input:
return 0.0
# 处理数值输入
if isinstance(volume_input, (int, float)):
result = float(volume_input)
debug_print(f"数值体积输入: {volume_input}{result}mL默认单位")
return result
# 处理字符串输入
volume_str = str(volume_input).lower().strip()
debug_print(f"解析体积字符串: '{volume_str}'")
# 处理特殊值
if volume_str in ['?', 'unknown', 'tbd', 'to be determined']:
default_volume = 50.0 # 50mL默认值
debug_print(f"检测到未知体积,使用默认值: {default_volume}mL")
return default_volume
# 如果是纯数字,使用默认单位
try:
value = float(volume_str)
if default_unit.lower() in ["ml", "milliliter"]:
result = value
elif default_unit.lower() in ["l", "liter"]:
result = value * 1000.0
elif default_unit.lower() in ["μl", "ul", "microliter"]:
result = value / 1000.0
else:
result = value # 默认mL
debug_print(f"纯数字输入: {volume_str}{result}mL单位: {default_unit}")
return result
except ValueError:
pass
# 移除空格并提取数字和单位
volume_clean = re.sub(r'\s+', '', volume_str)
# 匹配数字和单位的正则表达式
match = re.match(r'([0-9]*\.?[0-9]+)\s*(ml|l|μl|ul|microliter|milliliter|liter)?', volume_clean)
if not match:
debug_print(f"⚠️ 无法解析体积: '{volume_str}',使用默认值: 50mL")
return 50.0
value = float(match.group(1))
unit = match.group(2) or default_unit.lower()
# 转换为毫升
if unit in ['l', 'liter']:
volume = value * 1000.0 # L -> mL
elif unit in ['μl', 'ul', 'microliter']:
volume = value / 1000.0 # μL -> mL
else: # ml, milliliter 或默认
volume = value # 已经是mL
debug_print(f"体积解析: '{volume_str}'{value} {unit}{volume}mL")
return volume
# 测试函数
def test_unit_parser():
"""测试单位解析功能"""
print("=== 单位解析器测试 ===")
# 测试时间解析
time_tests = [
"30 min", "1 h", "300", "5.5 h", "?", 60.0, "2 hours", "30 s"
]
print("\n时间解析测试:")
for time_input in time_tests:
result = parse_time_with_units(time_input)
print(f" {time_input}{result}s ({result/60:.1f}min)")
# 测试体积解析
volume_tests = [
"100 mL", "2.5 L", "500", "?", 100.0, "500 μL", "1 liter"
]
print("\n体积解析测试:")
for volume_input in volume_tests:
result = parse_volume_with_units(volume_input)
print(f" {volume_input}{result}mL")
print("\n✅ 测试完成")
if __name__ == "__main__":
test_unit_parser()

View File

@@ -1,216 +1,316 @@
from typing import List, Dict, Any
from typing import List, Dict, Any, Union
import networkx as nx
import logging
import re
logger = logging.getLogger(__name__)
def debug_print(message):
"""调试输出"""
print(f"🧼 [WASH_SOLID] {message}", flush=True)
logger.info(f"[WASH_SOLID] {message}")
def parse_time_input(time_input: Union[str, float, int]) -> float:
"""统一时间解析函数(精简版)"""
if not time_input:
return 0.0
# 🔢 处理数值输入
if isinstance(time_input, (int, float)):
result = float(time_input)
debug_print(f"⏰ 数值时间: {time_input}{result}s")
return result
# 📝 处理字符串输入
time_str = str(time_input).lower().strip()
# ❓ 特殊值快速处理
special_times = {
'?': 60.0, 'unknown': 60.0, 'briefly': 30.0,
'quickly': 45.0, 'slowly': 120.0
}
if time_str in special_times:
result = special_times[time_str]
debug_print(f"🎯 特殊时间: '{time_str}'{result}s")
return result
# 🔢 数字提取(简化正则)
try:
# 提取数字
numbers = re.findall(r'\d+\.?\d*', time_str)
if numbers:
value = float(numbers[0])
# 简化单位判断
if any(unit in time_str for unit in ['min', 'm']):
result = value * 60.0
elif any(unit in time_str for unit in ['h', 'hour']):
result = value * 3600.0
else:
result = value # 默认秒
debug_print(f"✅ 时间解析: '{time_str}'{result}s")
return result
except:
pass
debug_print(f"⚠️ 时间解析失败: '{time_str}'使用默认60s")
return 60.0
def parse_volume_input(volume: Union[float, str], volume_spec: str = "", mass: str = "") -> float:
"""统一体积解析函数(精简版)"""
debug_print(f"💧 解析体积: volume={volume}, spec='{volume_spec}', mass='{mass}'")
# 🎯 优先级1volume_spec快速映射
if volume_spec:
spec_map = {
'small': 20.0, 'medium': 50.0, 'large': 100.0,
'minimal': 10.0, 'normal': 50.0, 'generous': 150.0
}
for key, val in spec_map.items():
if key in volume_spec.lower():
debug_print(f"🎯 规格匹配: '{volume_spec}'{val}mL")
return val
# 🧮 优先级2mass转体积简化1g=1mL
if mass:
try:
numbers = re.findall(r'\d+\.?\d*', mass)
if numbers:
value = float(numbers[0])
if 'mg' in mass.lower():
result = value / 1000.0
elif 'kg' in mass.lower():
result = value * 1000.0
else:
result = value # 默认g
debug_print(f"⚖️ 质量转换: {mass}{result}mL")
return result
except:
pass
# 📦 优先级3volume
if volume:
if isinstance(volume, (int, float)):
result = float(volume)
debug_print(f"💧 数值体积: {volume}{result}mL")
return result
elif isinstance(volume, str):
try:
# 提取数字
numbers = re.findall(r'\d+\.?\d*', volume)
if numbers:
value = float(numbers[0])
# 简化单位判断
if 'l' in volume.lower() and 'ml' not in volume.lower():
result = value * 1000.0 # L转mL
else:
result = value # 默认mL
debug_print(f"💧 字符串体积: '{volume}'{result}mL")
return result
except:
pass
# 默认值
debug_print(f"⚠️ 体积解析失败使用默认50mL")
return 50.0
def find_solvent_source(G: nx.DiGraph, solvent: str) -> str:
"""查找溶剂源(精简版)"""
debug_print(f"🔍 查找溶剂源: {solvent}")
# 简化搜索列表
search_patterns = [
f"flask_{solvent}", f"bottle_{solvent}", f"reagent_{solvent}",
"liquid_reagent_bottle_1", "flask_1", "solvent_bottle"
]
for pattern in search_patterns:
if pattern in G.nodes():
debug_print(f"🎉 找到溶剂源: {pattern}")
return pattern
debug_print(f"⚠️ 使用默认溶剂源: flask_{solvent}")
return f"flask_{solvent}"
def find_filtrate_vessel(G: nx.DiGraph, filtrate_vessel: str = "") -> str:
"""查找滤液容器(精简版)"""
debug_print(f"🔍 查找滤液容器: {filtrate_vessel}")
# 如果指定了且存在,直接使用
if filtrate_vessel and filtrate_vessel in G.nodes():
debug_print(f"✅ 使用指定容器: {filtrate_vessel}")
return filtrate_vessel
# 简化搜索列表
default_vessels = ["waste_workup", "filtrate_vessel", "flask_1", "collection_bottle_1"]
for vessel in default_vessels:
if vessel in G.nodes():
debug_print(f"🎉 找到滤液容器: {vessel}")
return vessel
debug_print(f"⚠️ 使用默认滤液容器: waste_workup")
return "waste_workup"
def generate_wash_solid_protocol(
G: nx.DiGraph,
vessel: str,
solvent: str,
volume: float,
volume: Union[float, str] = "50",
filtrate_vessel: str = "",
temp: float = 25.0,
stir: bool = False,
stir_speed: float = 0.0,
time: float = 0.0,
repeats: int = 1
time: Union[str, float] = "0",
repeats: int = 1,
volume_spec: str = "",
repeats_spec: str = "",
mass: str = "",
event: str = "",
**kwargs
) -> List[Dict[str, Any]]:
"""
生成固体清洗协议序列
Args:
G: 有向图,节点为设备和容器
vessel: 装有固体物质的容器名称
solvent: 用于清洗固体的溶剂名称
volume: 清洗溶剂的体积
filtrate_vessel: 滤液要收集到的容器名称,可选参数
temp: 清洗时的温度,可选参数
stir: 是否在清洗过程中搅拌,默认为 False
stir_speed: 搅拌速度,可选参数
time: 清洗的时间,可选参数
repeats: 清洗操作的重复次数,默认为 1
Returns:
List[Dict[str, Any]]: 固体清洗操作的动作序列
Raises:
ValueError: 当找不到必要的设备时抛出异常
Examples:
wash_solid_protocol = generate_wash_solid_protocol(
G, "reactor", "ethanol", 100.0, "waste_flask", 60.0, True, 300.0, 600.0, 3
)
生成固体清洗协议(精简版)
"""
debug_print("🧼" * 20)
debug_print("🚀 开始生成固体清洗协议 ✨")
debug_print(f"📝 输入参数:")
debug_print(f" 🥽 vessel: {vessel}")
debug_print(f" 🧪 solvent: {solvent}")
debug_print(f" 💧 volume: {volume}")
debug_print(f" ⏰ time: {time}")
debug_print(f" 🔄 repeats: {repeats}")
debug_print("🧼" * 20)
# 📋 快速验证
if not vessel or vessel not in G.nodes():
debug_print("❌ 容器验证失败! 😱")
raise ValueError("vessel 参数无效")
if not solvent:
debug_print("❌ 溶剂不能为空! 😱")
raise ValueError("solvent 参数不能为空")
debug_print("✅ 基础验证通过 🎯")
# 🔄 参数解析
debug_print("📍 步骤1: 参数解析... ⚡")
final_volume = parse_volume_input(volume, volume_spec, mass)
final_time = parse_time_input(time)
# 重复次数处理(简化)
if repeats_spec:
spec_map = {'few': 2, 'several': 3, 'many': 4, 'thorough': 5}
final_repeats = next((v for k, v in spec_map.items() if k in repeats_spec.lower()), repeats)
else:
final_repeats = max(1, min(repeats, 5)) # 限制1-5次
# 🕐 模拟时间优化
debug_print(" ⏱️ 模拟时间优化...")
original_time = final_time
if final_time > 60.0:
final_time = 60.0 # 限制最长60秒
debug_print(f" 🎮 时间优化: {original_time}s → {final_time}s ⚡")
# 参数修正
temp = max(25.0, min(temp, 80.0)) # 温度范围25-80°C
stir_speed = max(0.0, min(stir_speed, 300.0)) if stir else 0.0 # 速度范围0-300
debug_print(f"🎯 最终参数: 体积={final_volume}mL, 时间={final_time}s, 重复={final_repeats}")
# 🔍 查找设备
debug_print("📍 步骤2: 查找设备... 🔍")
try:
solvent_source = find_solvent_source(G, solvent)
actual_filtrate_vessel = find_filtrate_vessel(G, filtrate_vessel)
debug_print(f"🎉 设备配置完成 ✨")
except Exception as e:
debug_print(f"❌ 设备查找失败: {str(e)} 😭")
raise ValueError(f"设备查找失败: {str(e)}")
# 🚀 生成动作序列
debug_print("📍 步骤3: 生成清洗动作... 🧼")
action_sequence = []
# 验证容器是否存在
if vessel not in G.nodes():
raise ValueError(f"固体容器 {vessel} 不存在于图中")
if filtrate_vessel and filtrate_vessel not in G.nodes():
raise ValueError(f"滤液容器 {filtrate_vessel} 不存在于图中")
# 查找转移泵设备(用于添加溶剂和转移滤液)
pump_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_transfer_pump']
if not pump_nodes:
raise ValueError("没有找到可用的转移泵设备")
pump_id = pump_nodes[0]
# 查找加热设备(如果需要加热)
heatchill_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_heatchill']
heatchill_id = heatchill_nodes[0] if heatchill_nodes else None
# 查找搅拌设备(如果需要搅拌)
stirrer_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_stirrer']
stirrer_id = stirrer_nodes[0] if stirrer_nodes else None
# 查找过滤设备(用于分离固体和滤液)
filter_nodes = [node for node in G.nodes()
if G.nodes[node].get('class') == 'virtual_filter']
filter_id = filter_nodes[0] if filter_nodes else None
# 查找溶剂容器
solvent_vessel = f"flask_{solvent}"
if solvent_vessel not in G.nodes():
# 如果没有找到特定溶剂容器,查找可用的源容器
available_vessels = [node for node in G.nodes()
if node.startswith('flask_') and
G.nodes[node].get('type') == 'container']
if available_vessels:
solvent_vessel = available_vessels[0]
else:
raise ValueError(f"没有找到溶剂容器 {solvent}")
# 如果没有指定滤液容器,使用废液容器
if not filtrate_vessel:
waste_vessels = [node for node in G.nodes()
if 'waste' in node.lower() and
G.nodes[node].get('type') == 'container']
filtrate_vessel = waste_vessels[0] if waste_vessels else "waste_flask"
# 重复清洗操作
for repeat in range(repeats):
repeat_num = repeat + 1
for cycle in range(final_repeats):
debug_print(f" 🔄 第{cycle+1}/{final_repeats}次清洗...")
# 步骤1如果需要加热先设置温度
if temp > 25.0 and heatchill_id:
action_sequence.append({
"device_id": heatchill_id,
"action_name": "heat_chill_start",
# 1. 转移溶剂
try:
from .pump_protocol import generate_pump_protocol_with_rinsing
transfer_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=solvent_source,
to_vessel=vessel,
volume=final_volume,
amount="",
time=0.0,
viscous=False,
rinsing_solvent="",
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=2.5,
transfer_flowrate=0.5
)
if transfer_actions:
action_sequence.extend(transfer_actions)
debug_print(f" ✅ 转移动作: {len(transfer_actions)}个 🚚")
except Exception as e:
debug_print(f" ❌ 转移失败: {str(e)} 😞")
# 2. 搅拌(如果需要)
if stir and final_time > 0:
stir_action = {
"device_id": "stirrer_1",
"action_name": "stir",
"action_kwargs": {
"vessel": vessel,
"temp": temp,
"purpose": f"固体清洗 - 第 {repeat_num}"
"time": str(time),
"stir_time": final_time,
"stir_speed": stir_speed,
"settling_time": 10.0 # 🕐 缩短沉降时间
}
})
# 步骤2添加清洗溶剂到固体容器
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": solvent_vessel,
"to_vessel": vessel,
"volume": volume,
"amount": f"清洗溶剂 {solvent} - 第 {repeat_num}",
"time": 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
}
action_sequence.append(stir_action)
debug_print(f" ✅ 搅拌动作: {final_time}s, {stir_speed}RPM 🌪️")
# 3. 过滤
filter_action = {
"device_id": "filter_1",
"action_name": "filter",
"action_kwargs": {
"vessel": vessel,
"filtrate_vessel": actual_filtrate_vessel,
"temp": temp,
"volume": final_volume
}
}
action_sequence.append(filter_action)
debug_print(f" ✅ 过滤动作: → {actual_filtrate_vessel} 🌊")
# 4. 等待(缩短时间)
wait_time = 5.0 # 🕐 缩短等待时间10s → 5s
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": wait_time}
})
# 步骤3如果需要搅拌开始搅拌
if stir and stir_speed > 0 and stirrer_id:
if time > 0:
# 定时搅拌
action_sequence.append({
"device_id": stirrer_id,
"action_name": "stir",
"action_kwargs": {
"stir_time": time,
"stir_speed": stir_speed,
"settling_time": 30.0 # 搅拌后静置30秒
}
})
else:
# 开始搅拌(需要手动停止)
action_sequence.append({
"device_id": stirrer_id,
"action_name": "start_stir",
"action_kwargs": {
"vessel": vessel,
"stir_speed": stir_speed,
"purpose": f"固体清洗搅拌 - 第 {repeat_num}"
}
})
# 步骤4如果指定了清洗时间但没有搅拌等待清洗时间
if time > 0 and (not stir or stir_speed == 0):
# 这里可以添加等待操作,暂时跳过
pass
# 步骤5如果有搅拌且没有定时停止搅拌
if stir and stir_speed > 0 and time == 0 and stirrer_id:
action_sequence.append({
"device_id": stirrer_id,
"action_name": "stop_stir",
"action_kwargs": {
"vessel": vessel
}
})
# 步骤6过滤分离固体和滤液
if filter_id:
action_sequence.append({
"device_id": filter_id,
"action_name": "filter_sample",
"action_kwargs": {
"vessel": vessel,
"filtrate_vessel": filtrate_vessel,
"stir": False,
"stir_speed": 0.0,
"temp": temp,
"continue_heatchill": temp > 25.0,
"volume": volume
}
})
else:
# 没有专门的过滤设备,使用转移泵模拟过滤过程
# 将滤液转移到滤液容器
action_sequence.append({
"device_id": pump_id,
"action_name": "transfer",
"action_kwargs": {
"from_vessel": vessel,
"to_vessel": filtrate_vessel,
"volume": volume,
"amount": f"转移滤液 - 第 {repeat_num} 次清洗",
"time": 0.0,
"viscous": False,
"rinsing_solvent": "",
"rinsing_volume": 0.0,
"rinsing_repeats": 0,
"solid": False
}
})
# 步骤7如果加热了停止加热在最后一次清洗后
if temp > 25.0 and heatchill_id and repeat_num == repeats:
action_sequence.append({
"device_id": heatchill_id,
"action_name": "heat_chill_stop",
"action_kwargs": {
"vessel": vessel
}
})
debug_print(f" ✅ 等待: {wait_time}s ⏰")
# 🎊 总结
debug_print("🧼" * 20)
debug_print(f"🎉 固体清洗协议生成完成! ✨")
debug_print(f"📊 总动作数: {len(action_sequence)}")
debug_print(f"🥽 清洗容器: {vessel}")
debug_print(f"🧪 使用溶剂: {solvent}")
debug_print(f"💧 清洗体积: {final_volume}mL × {final_repeats}")
debug_print(f"⏱️ 预计总时间: {(final_time + 5) * final_repeats / 60:.1f} 分钟")
debug_print("🧼" * 20)
return action_sequence

View File

@@ -10,8 +10,9 @@ from unilabos.utils import logger
class BasicConfig:
ENV = "pro" # 'test'
config_path = ""
is_host_mode = True # 从registry.py移动过来
is_host_mode = True
slave_no_host = False # 是否跳过rclient.wait_for_service()
upload_registry = False
machine_name = "undefined"
vis_2d_enable = False

View File

@@ -1,9 +1,12 @@
import rtde_control
import dashboard_client
try:
import rtde_control
import dashboard_client
import rtde_receive
except ImportError as ex:
print("Import Error, Please Install Packages in ur_arm_task.py First!", ex)
import time
import json
from unilabos.devices.agv.robotiq_gripper import RobotiqGripper
import rtde_receive
from std_msgs.msg import Float64MultiArray
from pydantic import BaseModel

View File

@@ -234,71 +234,71 @@ class Laiyu:
resp_reset = self.reset()
return actual_mass_mg
if __name__ == "__main__":
'''
样例:对单个粉筒进行称量
'''
modbus = Laiyu(port="COM25")
mass_test = modbus.add_powder_tube(1, 'h12', 6.0)
print(f"实际出料质量:{mass_test}mg")
'''
样例:对单个粉筒进行称量
'''
'''
样例: 对一份excel文件记录的化合物进行称量
'''
modbus = Laiyu(port="COM25")
excel_file = r"C:\auto\laiyu\test1.xlsx"
# 定义输出文件路径,用于记录实际加样多少
output_file = r"C:\auto\laiyu\test_output.xlsx"
mass_test = modbus.add_powder_tube(1, 'h12', 6.0)
print(f"实际出料质量:{mass_test}mg")
# 定义物料名称和料筒位置关系
compound_positions = {
'XPhos': '1',
'Cu(OTf)2': '2',
'CuSO4': '3',
'PPh3': '4',
}
# read excel file
# excel_file = r"C:\auto\laiyu\test.xlsx"
df = pd.read_excel(excel_file, sheet_name='Sheet1')
# 读取Excel文件中的数据
# 遍历每一行数据
for index, row in df.iterrows():
# 获取物料名称和质量
copper_name = row['copper']
copper_mass = row['copper_mass']
ligand_name = row['ligand']
ligand_mass = row['ligand_mass']
target_tube_position = row['position']
# 获取物料位置 from compound_positions
copper_position = compound_positions.get(copper_name)
ligand_position = compound_positions.get(ligand_name)
# 判断物料位置是否存在
if copper_position is None:
print(f"物料位置不存在:{copper_name}")
continue
if ligand_position is None:
print(f"物料位置不存在:{ligand_name}")
continue
# 加铜
copper_actual_mass = modbus.add_powder_tube(int(copper_position), target_tube_position, copper_mass)
time.sleep(1)
# 加配体
ligand_actual_mass = modbus.add_powder_tube(int(ligand_position), target_tube_position, ligand_mass)
time.sleep(1)
# 保存至df
df.at[index, 'copper_actual_mass'] = copper_actual_mass
df.at[index, 'ligand_actual_mass'] = ligand_actual_mass
'''
样例: 对一份excel文件记录的化合物进行称量
'''
# 保存修改后的数据到新的Excel文件
df.to_excel(output_file, index=False)
print(f"已保存到文件:{output_file}")
excel_file = r"C:\auto\laiyu\test1.xlsx"
# 定义输出文件路径,用于记录实际加样多少
output_file = r"C:\auto\laiyu\test_output.xlsx"
# 定义物料名称和料筒位置关系
compound_positions = {
'XPhos': '1',
'Cu(OTf)2': '2',
'CuSO4': '3',
'PPh3': '4',
}
# read excel file
# excel_file = r"C:\auto\laiyu\test.xlsx"
df = pd.read_excel(excel_file, sheet_name='Sheet1')
# 读取Excel文件中的数据
# 遍历每一行数据
for index, row in df.iterrows():
# 获取物料名称和质量
copper_name = row['copper']
copper_mass = row['copper_mass']
ligand_name = row['ligand']
ligand_mass = row['ligand_mass']
target_tube_position = row['position']
# 获取物料位置 from compound_positions
copper_position = compound_positions.get(copper_name)
ligand_position = compound_positions.get(ligand_name)
# 判断物料位置是否存在
if copper_position is None:
print(f"物料位置不存在:{copper_name}")
continue
if ligand_position is None:
print(f"物料位置不存在:{ligand_name}")
continue
# 加铜
copper_actual_mass = modbus.add_powder_tube(int(copper_position), target_tube_position, copper_mass)
time.sleep(1)
# 加配体
ligand_actual_mass = modbus.add_powder_tube(int(ligand_position), target_tube_position, ligand_mass)
time.sleep(1)
# 保存至df
df.at[index, 'copper_actual_mass'] = copper_actual_mass
df.at[index, 'ligand_actual_mass'] = ligand_actual_mass
# 保存修改后的数据到新的Excel文件
df.to_excel(output_file, index=False)
print(f"已保存到文件:{output_file}")
# 关闭串口
modbus.ser.close()
print("串口已关闭")
# 关闭串口
modbus.ser.close()
print("串口已关闭")

View File

@@ -1,5 +1,6 @@
from __future__ import annotations
import traceback
from typing import List, Sequence, Optional, Literal, Union, Iterator
import asyncio
@@ -117,7 +118,7 @@ class LiquidHandlerAbstract(LiquidHandler):
pass # This mode is not verified.
else:
if len(asp_vols) != len(targets):
raise ValueError("Length of `vols` must match `targets`.")
raise ValueError(f"Length of `asp_vols` {len(asp_vols)} must match `targets` {len(targets)}.")
tip = next(self.current_tip)
await self.pick_up_tips(tip)
@@ -160,6 +161,7 @@ class LiquidHandlerAbstract(LiquidHandler):
await self.discard_tips()
except Exception as e:
traceback.print_exc()
raise RuntimeError(f"Liquid addition failed: {e}") from e
# ---------------------------------------------------------------
@@ -183,7 +185,7 @@ class LiquidHandlerAbstract(LiquidHandler):
spread: Literal["wide", "tight", "custom"] = "wide",
is_96_well: bool = False,
mix_stage: Optional[Literal["none", "before", "after", "both"]] = "none",
mix_times: Optional[List(int)] = None,
mix_times: Optional[List[int]] = None,
mix_vol: Optional[int] = None,
mix_rate: Optional[int] = None,
mix_liquid_height: Optional[float] = None,

File diff suppressed because it is too large Load Diff

View File

@@ -3,7 +3,11 @@ import sys
import io
# sys.path.insert(0, r'C:\kui\winprep_cli\winprep_c_Uni-lab\x64\Debug')
import winprep_c
try:
import winprep_c
except ImportError as e:
print("Error importing winprep_c:", e)
print("Please ensure that the winprep_c module is correctly installed and accessible.")
from queue import Queue

View File

@@ -21,7 +21,7 @@ except Exception as e:
sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), "..", "..", "..")))
from unilabos.utils.pywinauto_util import connect_application, get_process_pid_by_name, get_ui_path_with_window_specification, print_wrapper_identifiers
from unilabos.device_comms.universal_driver import UniversalDriver, SingleRunningExecutor
from unilabos.devices.template_driver import universal_driver as ud
from unilabos.device_comms import universal_driver as ud
print(f"使用文件DEBUG运行: {e}")

View File

@@ -9,7 +9,7 @@ from matplotlib.backends.backend_tkagg import FigureCanvasTkAgg
import time
class RamanObj:
def __init__(self, port_laser,port_ccd, baudrate_laser=9600, baudrate_ccd=921600):
def __init__(self, port_laser, port_ccd, baudrate_laser=9600, baudrate_ccd=921600):
self.port_laser = port_laser
self.port_ccd = port_ccd

View File

@@ -17,7 +17,7 @@ class MoveitInterface:
tf_buffer: Buffer
tf_listener: TransformListener
def __init__(self, moveit_type, joint_poses, rotation=None, device_config=None):
def __init__(self, moveit_type, joint_poses, rotation=None, device_config=None, **kwargs):
self.device_config = device_config
self.rotation = rotation
self.data_config = json.load(

View File

@@ -1,158 +1,213 @@
import asyncio
import logging
from typing import Dict, Any
import time as time_module
from typing import Dict, Any, Optional
class VirtualCentrifuge:
"""Virtual centrifuge device for CentrifugeProtocol testing"""
def __init__(self, device_id: str = None, config: Dict[str, Any] = None, **kwargs):
"""Virtual centrifuge device - 简化版,只保留核心功能"""
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
# 处理可能的不同调用方式
if device_id is None and 'id' in kwargs:
device_id = kwargs.pop('id')
if config is None and 'config' in kwargs:
config = kwargs.pop('config')
if device_id is None and "id" in kwargs:
device_id = kwargs.pop("id")
if config is None and "config" in kwargs:
config = kwargs.pop("config")
# 设置默认值
self.device_id = device_id or "unknown_centrifuge"
self.config = config or {}
self.logger = logging.getLogger(f"VirtualCentrifuge.{self.device_id}")
self.data = {}
# 添加调试信息
print(f"=== VirtualCentrifuge {self.device_id} is being created! ===")
print(f"=== Config: {self.config} ===")
print(f"=== Kwargs: {kwargs} ===")
# 从config或kwargs中获取配置参数
self.port = self.config.get('port') or kwargs.get('port', 'VIRTUAL')
self._max_speed = self.config.get('max_speed') or kwargs.get('max_speed', 15000.0)
self._max_temp = self.config.get('max_temp') or kwargs.get('max_temp', 40.0)
self._min_temp = self.config.get('min_temp') or kwargs.get('min_temp', 4.0)
# 处理其他kwargs参数,但跳过已知的配置参数
skip_keys = {'port', 'max_speed', 'max_temp', 'min_temp'}
self.port = self.config.get("port") or kwargs.get("port", "VIRTUAL")
self._max_speed = self.config.get("max_speed") or kwargs.get("max_speed", 15000.0)
self._max_temp = self.config.get("max_temp") or kwargs.get("max_temp", 40.0)
self._min_temp = self.config.get("min_temp") or kwargs.get("min_temp", 4.0)
# 处理其他kwargs参数
skip_keys = {"port", "max_speed", "max_temp", "min_temp"}
for key, value in kwargs.items():
if key not in skip_keys and not hasattr(self, key):
setattr(self, key, value)
async def initialize(self) -> bool:
"""Initialize virtual centrifuge"""
print(f"=== VirtualCentrifuge {self.device_id} initialize() called! ===")
self.logger.info(f"Initializing virtual centrifuge {self.device_id}")
# 只保留核心状态
self.data.update({
"status": "Idle",
"centrifuge_state": "Stopped", # Stopped, Running, Completed, Error
"current_speed": 0.0,
"target_speed": 0.0,
"current_temp": 25.0,
"target_temp": 25.0,
"max_speed": self._max_speed,
"max_temp": self._max_temp,
"min_temp": self._min_temp,
"centrifuge_state": "Stopped",
"time_remaining": 0.0,
"progress": 0.0,
"message": ""
"message": "Ready for centrifugation"
})
return True
async def cleanup(self) -> bool:
"""Cleanup virtual centrifuge"""
self.logger.info(f"Cleaning up virtual centrifuge {self.device_id}")
self.data.update({
"status": "Offline",
"centrifuge_state": "Offline",
"current_speed": 0.0,
"current_temp": 25.0,
"message": "System offline"
})
return True
async def centrifuge(self, vessel: str, speed: float, time: float, temp: float = 25.0) -> bool:
"""Execute centrifuge action - matches Centrifuge action"""
self.logger.info(f"Centrifuge: vessel={vessel}, speed={speed} RPM, time={time}s, temp={temp}°C")
async def centrifuge(
self,
vessel: str,
speed: float,
time: float,
temp: float = 25.0
) -> bool:
"""Execute centrifuge action - 简化的离心流程"""
self.logger.info(f"Centrifuge: vessel={vessel}, speed={speed} rpm, time={time}s, temp={temp}°C")
# 验证参数
if speed > self._max_speed:
self.logger.error(f"Speed {speed} exceeds maximum {self._max_speed}")
self.data["message"] = f"速度 {speed} 超过最大值 {self._max_speed}"
if speed > self._max_speed or speed < 100.0:
error_msg = f"离心速度 {speed} rpm 超出范围 (100-{self._max_speed} rpm)"
self.logger.error(error_msg)
self.data.update({
"status": f"Error: {error_msg}",
"centrifuge_state": "Error",
"message": error_msg
})
return False
if temp > self._max_temp or temp < self._min_temp:
self.logger.error(f"Temperature {temp} outside range {self._min_temp}-{self._max_temp}")
self.data["message"] = f"温度 {temp} 超出范围 {self._min_temp}-{self._max_temp}"
error_msg = f"温度 {temp}°C 超出范围 ({self._min_temp}-{self._max_temp}°C)"
self.logger.error(error_msg)
self.data.update({
"status": f"Error: {error_msg}",
"centrifuge_state": "Error",
"message": error_msg
})
return False
# 开始离心
self.data.update({
"status": "Running",
"centrifuge_state": "Centrifuging",
"target_speed": speed,
"status": f"离心中: {vessel}",
"centrifuge_state": "Running",
"current_speed": speed,
"target_temp": temp,
"target_speed": speed,
"current_temp": temp,
"target_temp": temp,
"time_remaining": time,
"vessel": vessel,
"progress": 0.0,
"message": f"离心中: {vessel} at {speed} RPM"
"message": f"Centrifuging {vessel} at {speed} rpm, {temp}°C"
})
# 模拟离心过程
simulation_time = min(time, 5.0) # 最多等待5秒用于测试
await asyncio.sleep(simulation_time)
# 离心完成
self.data.update({
"status": "Idle",
"centrifuge_state": "Stopped",
"current_speed": 0.0,
"target_speed": 0.0,
"time_remaining": 0.0,
"progress": 100.0,
"message": f"离心完成: {vessel}"
})
self.logger.info(f"Centrifuge completed for vessel {vessel}")
return True
# 状态属性
try:
# 离心过程 - 实时更新进度
start_time = time_module.time()
total_time = time
while True:
current_time = time_module.time()
elapsed = current_time - start_time
remaining = max(0, total_time - elapsed)
progress = min(100.0, (elapsed / total_time) * 100)
# 更新状态
self.data.update({
"time_remaining": remaining,
"progress": progress,
"status": f"离心中: {vessel} | {speed} rpm | {temp}°C | {progress:.1f}% | 剩余: {remaining:.0f}s",
"message": f"Centrifuging: {progress:.1f}% complete, {remaining:.0f}s remaining"
})
# 时间到了,退出循环
if remaining <= 0:
break
# 每秒更新一次
await asyncio.sleep(1.0)
# 离心完成
self.data.update({
"status": f"离心完成: {vessel} | {speed} rpm | {time}s",
"centrifuge_state": "Completed",
"progress": 100.0,
"time_remaining": 0.0,
"current_speed": 0.0, # 停止旋转
"current_temp": 25.0, # 恢复室温
"message": f"Centrifugation completed: {vessel} at {speed} rpm for {time}s"
})
self.logger.info(f"Centrifugation completed: {vessel} at {speed} rpm for {time}s")
return True
except Exception as e:
# 出错处理
self.logger.error(f"Error during centrifugation: {str(e)}")
self.data.update({
"status": f"离心错误: {str(e)}",
"centrifuge_state": "Error",
"current_speed": 0.0,
"current_temp": 25.0,
"progress": 0.0,
"time_remaining": 0.0,
"message": f"Centrifugation failed: {str(e)}"
})
return False
# === 核心状态属性 ===
@property
def status(self) -> str:
return self.data.get("status", "Unknown")
@property
def current_speed(self) -> float:
return self.data.get("current_speed", 0.0)
@property
def target_speed(self) -> float:
return self.data.get("target_speed", 0.0)
@property
def current_temp(self) -> float:
return self.data.get("current_temp", 25.0)
@property
def target_temp(self) -> float:
return self.data.get("target_temp", 25.0)
@property
def max_speed(self) -> float:
return self.data.get("max_speed", self._max_speed)
@property
def max_temp(self) -> float:
return self.data.get("max_temp", self._max_temp)
@property
def min_temp(self) -> float:
return self.data.get("min_temp", self._min_temp)
@property
def centrifuge_state(self) -> str:
return self.data.get("centrifuge_state", "Unknown")
@property
def current_speed(self) -> float:
return self.data.get("current_speed", 0.0)
@property
def target_speed(self) -> float:
return self.data.get("target_speed", 0.0)
@property
def current_temp(self) -> float:
return self.data.get("current_temp", 25.0)
@property
def target_temp(self) -> float:
return self.data.get("target_temp", 25.0)
@property
def max_speed(self) -> float:
return self._max_speed
@property
def max_temp(self) -> float:
return self._max_temp
@property
def min_temp(self) -> float:
return self._min_temp
@property
def time_remaining(self) -> float:
return self.data.get("time_remaining", 0.0)
@property
def progress(self) -> float:
return self.data.get("progress", 0.0)
@property
def message(self) -> str:
return self.data.get("message", "")

View File

@@ -3,7 +3,7 @@ import logging
from typing import Dict, Any, Optional
class VirtualColumn:
"""Virtual column device for RunColumn protocol"""
"""Virtual column device for RunColumn protocol 🏛️"""
def __init__(self, device_id: str = None, config: Dict[str, Any] = None, **kwargs):
# 处理可能的不同调用方式
@@ -25,45 +25,77 @@ class VirtualColumn:
self._column_length = self.config.get('column_length') or kwargs.get('column_length', 25.0)
self._column_diameter = self.config.get('column_diameter') or kwargs.get('column_diameter', 2.0)
print(f"=== VirtualColumn {self.device_id} created with max_flow_rate={self._max_flow_rate}, length={self._column_length}cm ===")
print(f"🏛️ === 虚拟色谱柱 {self.device_id} 已创建 === ✨")
print(f"📏 柱参数: 流速={self._max_flow_rate}mL/min | 长度={self._column_length}cm | 直径={self._column_diameter}cm 🔬")
async def initialize(self) -> bool:
"""Initialize virtual column"""
self.logger.info(f"Initializing virtual column {self.device_id}")
"""Initialize virtual column 🚀"""
self.logger.info(f"🔧 初始化虚拟色谱柱 {self.device_id}")
self.data.update({
"status": "Idle",
"column_state": "Ready",
"column_state": "Ready",
"current_flow_rate": 0.0,
"max_flow_rate": self._max_flow_rate,
"column_length": self._column_length,
"column_diameter": self._column_diameter,
"processed_volume": 0.0,
"progress": 0.0,
"current_status": "Ready"
"current_status": "Ready for separation"
})
self.logger.info(f"✅ 色谱柱 {self.device_id} 初始化完成 🏛️")
self.logger.info(f"📊 设备规格: 最大流速 {self._max_flow_rate}mL/min | 柱长 {self._column_length}cm 📏")
return True
async def cleanup(self) -> bool:
"""Cleanup virtual column"""
self.logger.info(f"Cleaning up virtual column {self.device_id}")
"""Cleanup virtual column 🧹"""
self.logger.info(f"🧹 清理虚拟色谱柱 {self.device_id} 🔚")
self.data.update({
"status": "Offline",
"column_state": "Offline",
"current_status": "System offline"
})
self.logger.info(f"✅ 色谱柱 {self.device_id} 清理完成 💤")
return True
async def run_column(self, from_vessel: str, to_vessel: str, column: str) -> bool:
"""Execute column chromatography run - matches RunColumn action"""
self.logger.info(f"Running column separation: {from_vessel} -> {to_vessel} using {column}")
async def run_column(self, from_vessel: str, to_vessel: str, column: str, **kwargs) -> bool:
"""Execute column chromatography run - matches RunColumn action 🏛️"""
# 提取额外参数
rf = kwargs.get('rf', '0.3')
solvent1 = kwargs.get('solvent1', 'ethyl_acetate')
solvent2 = kwargs.get('solvent2', 'hexane')
ratio = kwargs.get('ratio', '30:70')
self.logger.info(f"🏛️ 开始柱层析分离: {from_vessel}{to_vessel} 🚰")
self.logger.info(f" 🧪 使用色谱柱: {column}")
self.logger.info(f" 🎯 Rf值: {rf}")
self.logger.info(f" 🧪 洗脱溶剂: {solvent1}:{solvent2} ({ratio}) 💧")
# 更新设备状态
self.data.update({
"status": "Running",
"column_state": "Separating",
"current_status": "Column separation in progress",
"current_status": "🏛️ Column separation in progress",
"progress": 0.0,
"processed_volume": 0.0
"processed_volume": 0.0,
"current_from_vessel": from_vessel,
"current_to_vessel": to_vessel,
"current_column": column,
"current_rf": rf,
"current_solvents": f"{solvent1}:{solvent2} ({ratio})"
})
# 模拟柱层析分离过程
# 假设处理时间基于流速和柱子长度
separation_time = (self._column_length * 2) / self._max_flow_rate # 简化计算
base_time = (self._column_length * 2) / self._max_flow_rate # 简化计算
separation_time = max(base_time, 20.0) # 最少20秒
self.logger.info(f"⏱️ 预计分离时间: {separation_time:.1f}秒 ⌛")
self.logger.info(f"📏 柱参数: 长度 {self._column_length}cm | 流速 {self._max_flow_rate}mL/min 🌊")
steps = 20 # 分20个步骤模拟分离过程
step_time = separation_time / steps
@@ -74,34 +106,65 @@ class VirtualColumn:
progress = (i + 1) / steps * 100
volume_processed = (i + 1) * 5.0 # 假设每步处理5mL
# 不同阶段的状态描述
if progress <= 25:
phase = "🌊 样品上柱阶段"
phase_emoji = "📥"
elif progress <= 50:
phase = "🧪 洗脱开始"
phase_emoji = "💧"
elif progress <= 75:
phase = "⚗️ 成分分离中"
phase_emoji = "🔄"
else:
phase = "🎯 收集产物"
phase_emoji = "📤"
# 更新状态
status_msg = f"{phase_emoji} {phase}: {progress:.1f}% | 💧 已处理: {volume_processed:.1f}mL"
self.data.update({
"progress": progress,
"processed_volume": volume_processed,
"current_status": f"Column separation: {progress:.1f}% - Processing {volume_processed:.1f}mL"
"current_status": status_msg,
"current_phase": phase
})
self.logger.info(f"Column separation progress: {progress:.1f}%")
# 进度日志每25%打印一次)
if progress >= 25 and (i + 1) % 5 == 0: # 每5步25%)打印一次
self.logger.info(f"📊 分离进度: {progress:.0f}% | {phase} | 💧 {volume_processed:.1f}mL 完成 ✨")
# 分离完成
final_status = f"✅ 柱层析分离完成: {from_vessel}{to_vessel} | 💧 共处理 {volume_processed:.1f}mL"
self.data.update({
"status": "Idle",
"column_state": "Ready",
"current_status": "Column separation completed",
"progress": 100.0
"current_status": final_status,
"progress": 100.0,
"final_volume": volume_processed
})
self.logger.info(f"Column separation completed: {from_vessel} -> {to_vessel}")
self.logger.info(f"🎉 柱层析分离完成! ✨")
self.logger.info(f"📊 分离结果:")
self.logger.info(f" 🥽 源容器: {from_vessel}")
self.logger.info(f" 🥽 目标容器: {to_vessel}")
self.logger.info(f" 🏛️ 使用色谱柱: {column}")
self.logger.info(f" 💧 处理体积: {volume_processed:.1f}mL")
self.logger.info(f" 🧪 洗脱条件: {solvent1}:{solvent2} ({ratio})")
self.logger.info(f" 🎯 Rf值: {rf}")
self.logger.info(f" ⏱️ 总耗时: {separation_time:.1f}秒 🏁")
return True
# 状态属性
@property
def status(self) -> str:
return self.data.get("status", "Unknown")
return self.data.get("status", "Unknown")
@property
def column_state(self) -> str:
return self.data.get("column_state", "Unknown")
return self.data.get("column_state", "Unknown")
@property
def current_flow_rate(self) -> float:
@@ -129,4 +192,12 @@ class VirtualColumn:
@property
def current_status(self) -> str:
return self.data.get("current_status", "Ready")
return self.data.get("current_status", "📋 Ready")
@property
def current_phase(self) -> str:
return self.data.get("current_phase", "🏠 待机中")
@property
def final_volume(self) -> float:
return self.data.get("final_volume", 0.0)

View File

@@ -1,151 +1,250 @@
import asyncio
import logging
from typing import Dict, Any
import time as time_module
from typing import Dict, Any, Optional
class VirtualFilter:
"""Virtual filter device for FilterProtocol testing"""
"""Virtual filter device - 完全按照 Filter.action 规范 🌊"""
def __init__(self, device_id: str = None, config: Dict[str, Any] = None, **kwargs):
# 处理可能的不同调用方式
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
if device_id is None and 'id' in kwargs:
device_id = kwargs.pop('id')
if config is None and 'config' in kwargs:
config = kwargs.pop('config')
# 设置默认值
self.device_id = device_id or "unknown_filter"
self.config = config or {}
self.logger = logging.getLogger(f"VirtualFilter.{self.device_id}")
self.data = {}
# 添加调试信息
print(f"=== VirtualFilter {self.device_id} is being created! ===")
print(f"=== Config: {self.config} ===")
print(f"=== Kwargs: {kwargs} ===")
# 从config或kwargs中获取配置参数
self.port = self.config.get('port') or kwargs.get('port', 'VIRTUAL')
self._max_temp = self.config.get('max_temp') or kwargs.get('max_temp', 100.0)
self._max_stir_speed = self.config.get('max_stir_speed') or kwargs.get('max_stir_speed', 1000.0)
self._max_volume = self.config.get('max_volume') or kwargs.get('max_volume', 500.0)
# 处理其他kwargs参数,但跳过已知的配置参数
skip_keys = {'port', 'max_temp', 'max_stir_speed'}
# 处理其他kwargs参数
skip_keys = {'port', 'max_temp', 'max_stir_speed', 'max_volume'}
for key, value in kwargs.items():
if key not in skip_keys and not hasattr(self, key):
setattr(self, key, value)
async def initialize(self) -> bool:
"""Initialize virtual filter"""
print(f"=== VirtualFilter {self.device_id} initialize() called! ===")
self.logger.info(f"Initializing virtual filter {self.device_id}")
"""Initialize virtual filter 🚀"""
self.logger.info(f"🔧 初始化虚拟过滤器 {self.device_id} ")
# 按照 Filter.action 的 feedback 字段初始化
self.data.update({
"status": "Idle",
"filter_state": "Ready",
"current_temp": 25.0,
"target_temp": 25.0,
"max_temp": self._max_temp,
"stir_speed": 0.0,
"max_stir_speed": self._max_stir_speed,
"filtered_volume": 0.0,
"progress": 0.0,
"message": ""
"progress": 0.0, # Filter.action feedback
"current_temp": 25.0, # Filter.action feedback
"filtered_volume": 0.0, # Filter.action feedback
"current_status": "Ready for filtration", # Filter.action feedback
"message": "Ready for filtration"
})
self.logger.info(f"✅ 过滤器 {self.device_id} 初始化完成 🌊")
return True
async def cleanup(self) -> bool:
"""Cleanup virtual filter"""
self.logger.info(f"Cleaning up virtual filter {self.device_id}")
"""Cleanup virtual filter 🧹"""
self.logger.info(f"🧹 清理虚拟过滤器 {self.device_id} 🔚")
self.data.update({
"status": "Offline",
"current_status": "System offline",
"message": "System offline"
})
self.logger.info(f"✅ 过滤器 {self.device_id} 清理完成 💤")
return True
async def filter_sample(self, vessel: str, filtrate_vessel: str = "", stir: bool = False,
stir_speed: float = 300.0, temp: float = 25.0,
continue_heatchill: bool = False, volume: float = 0.0) -> bool:
"""Execute filter action - matches Filter action"""
self.logger.info(f"Filter: vessel={vessel}, filtrate_vessel={filtrate_vessel}, stir={stir}, volume={volume}")
async def filter(
self,
vessel: str,
filtrate_vessel: str = "",
stir: bool = False,
stir_speed: float = 300.0,
temp: float = 25.0,
continue_heatchill: bool = False,
volume: float = 0.0
) -> bool:
"""Execute filter action - 完全按照 Filter.action 参数 🌊"""
# 🔧 新增:温度自动调整
original_temp = temp
if temp == 0.0:
temp = 25.0 # 0度自动设置为室温
self.logger.info(f"🌡️ 温度自动调整: {original_temp}°C → {temp}°C (室温) 🏠")
elif temp < 4.0:
temp = 4.0 # 小于4度自动设置为4度
self.logger.info(f"🌡️ 温度自动调整: {original_temp}°C → {temp}°C (最低温度) ❄️")
self.logger.info(f"🌊 开始过滤操作: {vessel}{filtrate_vessel} 🚰")
self.logger.info(f" 🌪️ 搅拌: {stir} ({stir_speed} RPM)")
self.logger.info(f" 🌡️ 温度: {temp}°C")
self.logger.info(f" 💧 体积: {volume}mL")
self.logger.info(f" 🔥 保持加热: {continue_heatchill}")
# 验证参数
if temp > self._max_temp:
self.logger.error(f"Temperature {temp} exceeds maximum {self._max_temp}")
self.data["message"] = f"温度 {temp} 超过最大值 {self._max_temp}"
if temp > self._max_temp or temp < 4.0:
error_msg = f"🌡️ 温度 {temp}°C 超出范围 (4-{self._max_temp}°C) ⚠️"
self.logger.error(f" {error_msg}")
self.data.update({
"status": f"Error: 温度超出范围 ⚠️",
"current_status": f"Error: 温度超出范围 ⚠️",
"message": error_msg
})
return False
if stir and stir_speed > self._max_stir_speed:
self.logger.error(f"Stir speed {stir_speed} exceeds maximum {self._max_stir_speed}")
self.data["message"] = f"搅拌速度 {stir_speed} 超过最大值 {self._max_stir_speed}"
error_msg = f"🌪️ 搅拌速度 {stir_speed} RPM 超出范围 (0-{self._max_stir_speed} RPM) ⚠️"
self.logger.error(f" {error_msg}")
self.data.update({
"status": f"Error: 搅拌速度超出范围 ⚠️",
"current_status": f"Error: 搅拌速度超出范围 ⚠️",
"message": error_msg
})
return False
if volume > self._max_volume:
error_msg = f"💧 过滤体积 {volume} mL 超出范围 (0-{self._max_volume} mL) ⚠️"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"Error: 体积超出范围 ⚠️",
"current_status": f"Error: 体积超出范围 ⚠️",
"message": error_msg
})
return False
# 开始过滤
filter_volume = volume if volume > 0 else 50.0
self.logger.info(f"🚀 开始过滤 {filter_volume}mL 液体 💧")
self.data.update({
"status": "Running",
"filter_state": "Filtering",
"target_temp": temp,
"status": f"🌊 过滤中: {vessel}",
"current_temp": temp,
"stir_speed": stir_speed if stir else 0.0,
"vessel": vessel,
"filtrate_vessel": filtrate_vessel,
"target_volume": volume,
"filtered_volume": 0.0,
"progress": 0.0,
"message": f"过滤中: {vessel}"
"current_status": f"🌊 Filtering {vessel}{filtrate_vessel}",
"message": f"🚀 Starting filtration: {vessel}{filtrate_vessel}"
})
# 模拟过滤过程
simulation_time = min(volume / 10.0 if volume > 0 else 5.0, 10.0)
await asyncio.sleep(simulation_time)
# 过滤完成
filtered_vol = volume if volume > 0 else 50.0 # 默认过滤量
self.data.update({
"status": "Idle",
"filter_state": "Ready",
"current_temp": 25.0 if not continue_heatchill else temp,
"target_temp": 25.0 if not continue_heatchill else temp,
"stir_speed": 0.0 if not stir else stir_speed,
"filtered_volume": filtered_vol,
"progress": 100.0,
"message": f"过滤完成: {filtered_vol}mL"
})
self.logger.info(f"Filter completed: {filtered_vol}mL from {vessel}")
return True
try:
# 过滤过程 - 实时更新进度
start_time = time_module.time()
# 根据体积和搅拌估算过滤时间
base_time = filter_volume / 5.0 # 5mL/s 基础速度
if stir:
base_time *= 0.8 # 搅拌加速过滤
self.logger.info(f"🌪️ 搅拌加速过滤预计时间减少20% ⚡")
if temp > 50.0:
base_time *= 0.7 # 高温加速过滤
self.logger.info(f"🔥 高温加速过滤预计时间减少30% ⚡")
filter_time = max(base_time, 10.0) # 最少10秒
self.logger.info(f"⏱️ 预计过滤时间: {filter_time:.1f}秒 ⌛")
while True:
current_time = time_module.time()
elapsed = current_time - start_time
remaining = max(0, filter_time - elapsed)
progress = min(100.0, (elapsed / filter_time) * 100)
current_filtered = (progress / 100.0) * filter_volume
# 更新状态 - 按照 Filter.action feedback 字段
status_msg = f"🌊 过滤中: {vessel}"
if stir:
status_msg += f" | 🌪️ 搅拌: {stir_speed} RPM"
status_msg += f" | 🌡️ {temp}°C | 📊 {progress:.1f}% | 💧 已过滤: {current_filtered:.1f}mL"
self.data.update({
"progress": progress, # Filter.action feedback
"current_temp": temp, # Filter.action feedback
"filtered_volume": current_filtered, # Filter.action feedback
"current_status": f"🌊 Filtering: {progress:.1f}% complete", # Filter.action feedback
"status": status_msg,
"message": f"🌊 Filtering: {progress:.1f}% complete, {current_filtered:.1f}mL filtered"
})
# 进度日志每25%打印一次)
if progress >= 25 and progress % 25 < 1:
self.logger.info(f"📊 过滤进度: {progress:.0f}% | 💧 {current_filtered:.1f}mL 完成 ✨")
if remaining <= 0:
break
await asyncio.sleep(1.0)
# 过滤完成
final_temp = temp if continue_heatchill else 25.0
final_status = f"✅ 过滤完成: {vessel} | 💧 {filter_volume}mL → {filtrate_vessel}"
if continue_heatchill:
final_status += " | 🔥 继续加热搅拌"
self.logger.info(f"🔥 继续保持加热搅拌状态 🌪️")
self.data.update({
"status": final_status,
"progress": 100.0, # Filter.action feedback
"current_temp": final_temp, # Filter.action feedback
"filtered_volume": filter_volume, # Filter.action feedback
"current_status": f"✅ Filtration completed: {filter_volume}mL", # Filter.action feedback
"message": f"✅ Filtration completed: {filter_volume}mL filtered from {vessel}"
})
self.logger.info(f"🎉 过滤完成! 💧 {filter_volume}mL 从 {vessel} 过滤到 {filtrate_vessel}")
self.logger.info(f"📊 最终状态: 温度 {final_temp}°C | 进度 100% | 体积 {filter_volume}mL 🏁")
return True
except Exception as e:
error_msg = f"过滤过程中发生错误: {str(e)} 💥"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 过滤错误: {str(e)}",
"current_status": f"❌ Filtration failed: {str(e)}",
"message": f"❌ Filtration failed: {str(e)}"
})
return False
# 状态属性
# === 核心状态属性 - 按照 Filter.action feedback 字段 ===
@property
def status(self) -> str:
return self.data.get("status", "Unknown")
@property
def filter_state(self) -> str:
return self.data.get("filter_state", "Unknown")
@property
def current_temp(self) -> float:
return self.data.get("current_temp", 25.0)
@property
def target_temp(self) -> float:
return self.data.get("target_temp", 25.0)
@property
def max_temp(self) -> float:
return self.data.get("max_temp", self._max_temp)
@property
def stir_speed(self) -> float:
return self.data.get("stir_speed", 0.0)
@property
def max_stir_speed(self) -> float:
return self.data.get("max_stir_speed", self._max_stir_speed)
@property
def filtered_volume(self) -> float:
return self.data.get("filtered_volume", 0.0)
return self.data.get("status", "Unknown")
@property
def progress(self) -> float:
"""Filter.action feedback 字段 📊"""
return self.data.get("progress", 0.0)
@property
def current_temp(self) -> float:
"""Filter.action feedback 字段 🌡️"""
return self.data.get("current_temp", 25.0)
@property
def filtered_volume(self) -> float:
"""Filter.action feedback 字段 💧"""
return self.data.get("filtered_volume", 0.0)
@property
def current_status(self) -> str:
"""Filter.action feedback 字段 📋"""
return self.data.get("current_status", "")
@property
def message(self) -> str:
return self.data.get("message", "")
return self.data.get("message", "")
@property
def max_temp(self) -> float:
return self._max_temp
@property
def max_stir_speed(self) -> float:
return self._max_stir_speed
@property
def max_volume(self) -> float:
return self._max_volume

View File

@@ -0,0 +1,46 @@
import time
from typing import Dict, Any, Optional
class VirtualGasSource:
"""Virtual gas source for testing"""
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
self.device_id = device_id or "unknown_gas_source"
self.config = config or {}
self.data = {}
self._status = "OPEN"
async def initialize(self) -> bool:
"""Initialize virtual gas source"""
self.data.update({
"status": self._status
})
return True
async def cleanup(self) -> bool:
"""Cleanup virtual gas source"""
return True
@property
def status(self) -> str:
return self._status
def get_status(self) -> str:
return self._status
def set_status(self, string):
self._status = string
time.sleep(5)
def open(self):
self._status = "OPEN"
def close(self):
self._status = "CLOSED"
def is_open(self):
return self._status
def is_closed(self):
return not self._status

View File

@@ -1,9 +1,10 @@
import asyncio
import logging
import time as time_module # 重命名time模块避免与参数冲突
from typing import Dict, Any
class VirtualHeatChill:
"""Virtual heat chill device for HeatChillProtocol testing"""
"""Virtual heat chill device for HeatChillProtocol testing 🌡️"""
def __init__(self, device_id: str = None, config: Dict[str, Any] = None, **kwargs):
# 处理可能的不同调用方式
@@ -19,89 +20,305 @@ class VirtualHeatChill:
self.logger = logging.getLogger(f"VirtualHeatChill.{self.device_id}")
self.data = {}
# 添加调试信息
print(f"=== VirtualHeatChill {self.device_id} is being created! ===")
print(f"=== Config: {self.config} ===")
print(f"=== Kwargs: {kwargs} ===")
# 从config或kwargs中获取配置参数
self.port = self.config.get('port') or kwargs.get('port', 'VIRTUAL')
self._max_temp = self.config.get('max_temp') or kwargs.get('max_temp', 200.0)
self._min_temp = self.config.get('min_temp') or kwargs.get('min_temp', -80.0)
self._max_stir_speed = self.config.get('max_stir_speed') or kwargs.get('max_stir_speed', 1000.0)
# 处理其他kwargs参数,但跳过已知的配置参数
# 处理其他kwargs参数
skip_keys = {'port', 'max_temp', 'min_temp', 'max_stir_speed'}
for key, value in kwargs.items():
if key not in skip_keys and not hasattr(self, key):
setattr(self, key, value)
print(f"🌡️ === 虚拟温控设备 {self.device_id} 已创建 === ✨")
print(f"🔥 温度范围: {self._min_temp}°C ~ {self._max_temp}°C | 🌪️ 最大搅拌: {self._max_stir_speed} RPM")
async def initialize(self) -> bool:
"""Initialize virtual heat chill"""
print(f"=== VirtualHeatChill {self.device_id} initialize() called! ===")
self.logger.info(f"Initializing virtual heat chill {self.device_id}")
"""Initialize virtual heat chill 🚀"""
self.logger.info(f"🔧 初始化虚拟温控设备 {self.device_id} ")
# 初始化状态信息
self.data.update({
"status": "Idle"
"status": "🏠 待机中",
"operation_mode": "Idle",
"is_stirring": False,
"stir_speed": 0.0,
"remaining_time": 0.0,
})
self.logger.info(f"✅ 温控设备 {self.device_id} 初始化完成 🌡️")
self.logger.info(f"📊 设备规格: 温度范围 {self._min_temp}°C ~ {self._max_temp}°C | 搅拌范围 0 ~ {self._max_stir_speed} RPM")
return True
async def cleanup(self) -> bool:
"""Cleanup virtual heat chill"""
self.logger.info(f"Cleaning up virtual heat chill {self.device_id}")
"""Cleanup virtual heat chill 🧹"""
self.logger.info(f"🧹 清理虚拟温控设备 {self.device_id} 🔚")
self.data.update({
"status": "💤 离线",
"operation_mode": "Offline",
"is_stirring": False,
"stir_speed": 0.0,
"remaining_time": 0.0
})
self.logger.info(f"✅ 温控设备 {self.device_id} 清理完成 💤")
return True
async def heat_chill(self, vessel: str, temp: float, time: float, stir: bool,
async def heat_chill(self, vessel: str, temp: float, time, stir: bool,
stir_speed: float, purpose: str) -> bool:
"""Execute heat chill action - matches HeatChill action exactly"""
self.logger.info(f"HeatChill: vessel={vessel}, temp={temp}°C, time={time}s, stir={stir}, stir_speed={stir_speed}, purpose={purpose}")
"""Execute heat chill action - 🔧 修复:确保参数类型正确"""
# 验证参数
# 🔧 关键修复:确保所有参数类型正确
try:
temp = float(temp)
time_value = float(time) # 强制转换为浮点数
stir_speed = float(stir_speed)
stir = bool(stir)
vessel = str(vessel)
purpose = str(purpose)
except (ValueError, TypeError) as e:
error_msg = f"参数类型转换错误: temp={temp}({type(temp)}), time={time}({type(time)}), error={str(e)}"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: {error_msg}",
"operation_mode": "Error"
})
return False
# 确定温度操作emoji
if temp > 25.0:
temp_emoji = "🔥"
operation_mode = "Heating"
status_action = "加热"
elif temp < 25.0:
temp_emoji = "❄️"
operation_mode = "Cooling"
status_action = "冷却"
else:
temp_emoji = "🌡️"
operation_mode = "Maintaining"
status_action = "保温"
self.logger.info(f"🌡️ 开始温控操作: {vessel}{temp}°C {temp_emoji}")
self.logger.info(f" 🥽 容器: {vessel}")
self.logger.info(f" 🎯 目标温度: {temp}°C {temp_emoji}")
self.logger.info(f" ⏰ 持续时间: {time_value}s")
self.logger.info(f" 🌪️ 搅拌: {stir} ({stir_speed} RPM)")
self.logger.info(f" 📝 目的: {purpose}")
# 验证参数范围
if temp > self._max_temp or temp < self._min_temp:
self.logger.error(f"Temperature {temp} outside range {self._min_temp}-{self._max_temp}")
self.data["status"] = f"温度 {temp} 超出范围"
error_msg = f"🌡️ 温度 {temp}°C 超出范围 ({self._min_temp}°C - {self._max_temp}°C) ⚠️"
self.logger.error(f" {error_msg}")
self.data.update({
"status": f"❌ 错误: 温度超出范围 ⚠️",
"operation_mode": "Error"
})
return False
if stir and stir_speed > self._max_stir_speed:
self.logger.error(f"Stir speed {stir_speed} exceeds maximum {self._max_stir_speed}")
self.data["status"] = f"搅拌速度 {stir_speed} 超出范围"
error_msg = f"🌪️ 搅拌速度 {stir_speed} RPM 超出最大值 {self._max_stir_speed} RPM ⚠️"
self.logger.error(f" {error_msg}")
self.data.update({
"status": f"❌ 错误: 搅拌速度超出范围 ⚠️",
"operation_mode": "Error"
})
return False
# 开始加热/冷却
if time_value <= 0:
error_msg = f"⏰ 时间 {time_value}s 必须大于0 ⚠️"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: 时间参数无效 ⚠️",
"operation_mode": "Error"
})
return False
# 🔧 修复:使用转换后的时间值
start_time = time_module.time()
total_time = time_value # 使用转换后的浮点数
self.logger.info(f"🚀 开始{status_action}程序! 预计用时 {total_time:.1f}秒 ⏱️")
# 开始操作
stir_info = f" | 🌪️ 搅拌: {stir_speed} RPM" if stir else ""
self.data.update({
"status": f"加热/冷却中: {vessel}{temp}°C"
"status": f"{temp_emoji} 运行中: {status_action} {vessel}{temp}°C | ⏰ 剩余: {total_time:.0f}s{stir_info}",
"operation_mode": operation_mode,
"is_stirring": stir,
"stir_speed": stir_speed if stir else 0.0,
"remaining_time": total_time,
})
# 模拟加热/冷却时间
simulation_time = min(time, 10.0) # 最多等待10秒用于测试
await asyncio.sleep(simulation_time)
# 在等待过程中每秒更新剩余时间
last_logged_time = 0
while True:
current_time = time_module.time()
elapsed = current_time - start_time
remaining = max(0, total_time - elapsed)
progress = (elapsed / total_time) * 100 if total_time > 0 else 100
# 更新剩余时间和状态
self.data.update({
"remaining_time": remaining,
"status": f"{temp_emoji} 运行中: {status_action} {vessel}{temp}°C | ⏰ 剩余: {remaining:.0f}s{stir_info}",
"progress": progress
})
# 进度日志每25%打印一次)
if progress >= 25 and int(progress) % 25 == 0 and int(progress) != last_logged_time:
self.logger.info(f"📊 {status_action}进度: {progress:.0f}% | ⏰ 剩余: {remaining:.0f}s | {temp_emoji} 目标: {temp}°C ✨")
last_logged_time = int(progress)
# 如果时间到了,退出循环
if remaining <= 0:
break
# 等待1秒后再次检查
await asyncio.sleep(1.0)
# 加热/冷却完成
self.data["status"] = f"完成: {vessel} 已达到 {temp}°C"
# 操作完成
final_stir_info = f" | 🌪️ 搅拌: {stir_speed} RPM" if stir else ""
self.data.update({
"status": f"✅ 完成: {vessel} 已达到 {temp}°C {temp_emoji} | ⏱️ 用时: {total_time:.0f}s{final_stir_info}",
"operation_mode": "Completed",
"remaining_time": 0.0,
"is_stirring": False,
"stir_speed": 0.0,
"progress": 100.0
})
self.logger.info(f"🎉 温控操作完成! ✨")
self.logger.info(f"📊 操作结果:")
self.logger.info(f" 🥽 容器: {vessel}")
self.logger.info(f" 🌡️ 达到温度: {temp}°C {temp_emoji}")
self.logger.info(f" ⏱️ 总用时: {total_time:.0f}s")
if stir:
self.logger.info(f" 🌪️ 搅拌速度: {stir_speed} RPM")
self.logger.info(f" 📝 操作目的: {purpose} 🏁")
self.logger.info(f"HeatChill completed for vessel {vessel} at {temp}°C")
return True
async def heat_chill_start(self, vessel: str, temp: float, purpose: str) -> bool:
"""Start heat chill - matches HeatChillStart action exactly"""
self.logger.info(f"HeatChillStart: vessel={vessel}, temp={temp}°C, purpose={purpose}")
"""Start continuous heat chill 🔄"""
# 🔧 添加类型转换
try:
temp = float(temp)
vessel = str(vessel)
purpose = str(purpose)
except (ValueError, TypeError) as e:
error_msg = f"参数类型转换错误: {str(e)}"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: {error_msg}",
"operation_mode": "Error"
})
return False
# 确定温度操作emoji
if temp > 25.0:
temp_emoji = "🔥"
operation_mode = "Heating"
status_action = "持续加热"
elif temp < 25.0:
temp_emoji = "❄️"
operation_mode = "Cooling"
status_action = "持续冷却"
else:
temp_emoji = "🌡️"
operation_mode = "Maintaining"
status_action = "恒温保持"
self.logger.info(f"🔄 启动持续温控: {vessel}{temp}°C {temp_emoji}")
self.logger.info(f" 🥽 容器: {vessel}")
self.logger.info(f" 🎯 目标温度: {temp}°C {temp_emoji}")
self.logger.info(f" 🔄 模式: {status_action}")
self.logger.info(f" 📝 目的: {purpose}")
# 验证参数
if temp > self._max_temp or temp < self._min_temp:
self.logger.error(f"Temperature {temp} outside range {self._min_temp}-{self._max_temp}")
self.data["status"] = f"温度 {temp} 超出范围"
error_msg = f"🌡️ 温度 {temp}°C 超出范围 ({self._min_temp}°C - {self._max_temp}°C) ⚠️"
self.logger.error(f" {error_msg}")
self.data.update({
"status": f"❌ 错误: 温度超出范围 ⚠️",
"operation_mode": "Error"
})
return False
self.data["status"] = f"开始加热/冷却: {vessel}{temp}°C"
self.data.update({
"status": f"🔄 启动: {status_action} {vessel}{temp}°C {temp_emoji} | ♾️ 持续运行",
"operation_mode": operation_mode,
"is_stirring": False,
"stir_speed": 0.0,
"remaining_time": -1.0, # -1 表示持续运行
})
self.logger.info(f"✅ 持续温控已启动! {temp_emoji} {status_action}模式 🚀")
return True
async def heat_chill_stop(self, vessel: str) -> bool:
"""Stop heat chill - matches HeatChillStop action exactly"""
self.logger.info(f"HeatChillStop: vessel={vessel}")
"""Stop heat chill 🛑"""
self.data["status"] = f"停止加热/冷却: {vessel}"
# 🔧 添加类型转换
try:
vessel = str(vessel)
except (ValueError, TypeError) as e:
error_msg = f"参数类型转换错误: {str(e)}"
self.logger.error(f"{error_msg}")
return False
self.logger.info(f"🛑 停止温控: {vessel}")
self.data.update({
"status": f"🛑 已停止: {vessel} 温控停止",
"operation_mode": "Stopped",
"is_stirring": False,
"stir_speed": 0.0,
"remaining_time": 0.0,
})
self.logger.info(f"✅ 温控设备已停止 {vessel} 的温度控制 🏁")
return True
# 状态属性 - 只保留 action 中定义的 feedback
# 状态属性
@property
def status(self) -> str:
return self.data.get("status", "Idle")
return self.data.get("status", "🏠 待机中")
@property
def operation_mode(self) -> str:
return self.data.get("operation_mode", "Idle")
@property
def is_stirring(self) -> bool:
return self.data.get("is_stirring", False)
@property
def stir_speed(self) -> float:
return self.data.get("stir_speed", 0.0)
@property
def remaining_time(self) -> float:
return self.data.get("remaining_time", 0.0)
@property
def progress(self) -> float:
return self.data.get("progress", 0.0)
@property
def max_temp(self) -> float:
return self._max_temp
@property
def min_temp(self) -> float:
return self._min_temp
@property
def max_stir_speed(self) -> float:
return self._max_stir_speed

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import time
import logging
from typing import Union, Dict, Optional
class VirtualMultiwayValve:
"""
虚拟九通阀门 - 0号位连接transfer pump1-8号位连接其他设备 🔄
"""
def __init__(self, port: str = "VIRTUAL", positions: int = 8):
self.port = port
self.max_positions = positions # 1-8号位
self.total_positions = positions + 1 # 0-8号位共9个位置
# 添加日志记录器
self.logger = logging.getLogger(f"VirtualMultiwayValve.{port}")
# 状态属性
self._status = "Idle"
self._valve_state = "Ready"
self._current_position = 0 # 默认在0号位transfer pump位置
self._target_position = 0
# 位置映射说明
self.position_map = {
0: "transfer_pump", # 0号位连接转移泵
1: "port_1", # 1号位
2: "port_2", # 2号位
3: "port_3", # 3号位
4: "port_4", # 4号位
5: "port_5", # 5号位
6: "port_6", # 6号位
7: "port_7", # 7号位
8: "port_8" # 8号位
}
print(f"🔄 === 虚拟多通阀门已创建 === ✨")
print(f"🎯 端口: {port} | 📊 位置范围: 0-{self.max_positions} | 🏠 初始位置: 0 (transfer_pump)")
self.logger.info(f"🔧 多通阀门初始化: 端口={port}, 最大位置={self.max_positions}")
@property
def status(self) -> str:
return self._status
@property
def valve_state(self) -> str:
return self._valve_state
@property
def current_position(self) -> int:
return self._current_position
@property
def target_position(self) -> int:
return self._target_position
def get_current_position(self) -> int:
"""获取当前阀门位置 📍"""
return self._current_position
def get_current_port(self) -> str:
"""获取当前连接的端口名称 🔌"""
return self.position_map.get(self._current_position, "unknown")
def set_position(self, command: Union[int, str]):
"""
设置阀门位置 - 支持0-8位置 🎯
Args:
command: 目标位置 (0-8) 或位置字符串
0: transfer pump位置
1-8: 其他设备位置
"""
try:
# 如果是字符串形式的位置,先转换为数字
if isinstance(command, str):
pos = int(command)
else:
pos = int(command)
if pos < 0 or pos > self.max_positions:
error_msg = f"位置必须在 0-{self.max_positions} 范围内"
self.logger.error(f"{error_msg}: 请求位置={pos}")
raise ValueError(error_msg)
# 获取位置描述emoji
if pos == 0:
pos_emoji = "🚰"
pos_desc = "泵位置"
else:
pos_emoji = "🔌"
pos_desc = f"端口{pos}"
old_position = self._current_position
old_port = self.get_current_port()
self.logger.info(f"🔄 阀门切换: {old_position}({old_port}) → {pos}({self.position_map.get(pos, 'unknown')}) {pos_emoji}")
self._status = "Busy"
self._valve_state = "Moving"
self._target_position = pos
# 模拟阀门切换时间
switch_time = abs(self._current_position - pos) * 0.5 # 每个位置0.5秒
if switch_time > 0:
self.logger.info(f"⏱️ 阀门移动中... 预计用时: {switch_time:.1f}秒 🔄")
time.sleep(switch_time)
self._current_position = pos
self._status = "Idle"
self._valve_state = "Ready"
current_port = self.get_current_port()
success_msg = f"✅ 阀门已切换到位置 {pos} ({current_port}) {pos_emoji}"
self.logger.info(success_msg)
return success_msg
except ValueError as e:
error_msg = f"❌ 阀门切换失败: {str(e)}"
self._status = "Error"
self._valve_state = "Error"
self.logger.error(error_msg)
return error_msg
def set_to_pump_position(self):
"""切换到transfer pump位置0号位🚰"""
self.logger.info(f"🚰 切换到泵位置...")
return self.set_position(0)
def set_to_port(self, port_number: int):
"""
切换到指定端口位置 🔌
Args:
port_number: 端口号 (1-8)
"""
if port_number < 1 or port_number > self.max_positions:
error_msg = f"端口号必须在 1-{self.max_positions} 范围内"
self.logger.error(f"{error_msg}: 请求端口={port_number}")
raise ValueError(error_msg)
self.logger.info(f"🔌 切换到端口 {port_number}...")
return self.set_position(port_number)
def open(self):
"""打开阀门 - 设置到transfer pump位置0号位🔓"""
self.logger.info(f"🔓 打开阀门,设置到泵位置...")
return self.set_to_pump_position()
def close(self):
"""关闭阀门 - 对于多通阀门,设置到一个"关闭"状态 🔒"""
self.logger.info(f"🔒 关闭阀门...")
self._status = "Busy"
self._valve_state = "Closing"
time.sleep(0.5)
# 可以选择保持当前位置或设置特殊关闭状态
self._status = "Idle"
self._valve_state = "Closed"
close_msg = f"🔒 阀门已关闭,保持在位置 {self._current_position} ({self.get_current_port()})"
self.logger.info(close_msg)
return close_msg
def get_valve_position(self) -> int:
"""获取阀门位置 - 兼容性方法 📍"""
return self._current_position
def is_at_position(self, position: int) -> bool:
"""检查是否在指定位置 🎯"""
result = self._current_position == position
# 删除debug日志self.logger.debug(f"🎯 位置检查: 当前={self._current_position}, 目标={position}, 匹配={result}")
return result
def is_at_pump_position(self) -> bool:
"""检查是否在transfer pump位置 🚰"""
result = self._current_position == 0
# 删除debug日志pump_status = "是" if result else "否"
# 删除debug日志self.logger.debug(f"🚰 泵位置检查: {pump_status} (当前位置: {self._current_position})")
return result
def is_at_port(self, port_number: int) -> bool:
"""检查是否在指定端口位置 🔌"""
result = self._current_position == port_number
# 删除debug日志port_status = "是" if result else "否"
# 删除debug日志self.logger.debug(f"🔌 端口{port_number}检查: {port_status} (当前位置: {self._current_position})")
return result
def get_available_positions(self) -> list:
"""获取可用位置列表 📋"""
positions = list(range(0, self.max_positions + 1))
# 删除debug日志self.logger.debug(f"📋 可用位置: {positions}")
return positions
def get_available_ports(self) -> Dict[int, str]:
"""获取可用端口映射 🗺️"""
# 删除debug日志self.logger.debug(f"🗺️ 端口映射: {self.position_map}")
return self.position_map.copy()
def reset(self):
"""重置阀门到transfer pump位置0号位🔄"""
self.logger.info(f"🔄 重置阀门到泵位置...")
return self.set_position(0)
def switch_between_pump_and_port(self, port_number: int):
"""
在transfer pump位置和指定端口之间切换 🔄
Args:
port_number: 目标端口号 (1-8)
"""
if self._current_position == 0:
# 当前在pump位置切换到指定端口
self.logger.info(f"🔄 从泵位置切换到端口 {port_number}...")
return self.set_to_port(port_number)
else:
# 当前在某个端口切换到pump位置
self.logger.info(f"🔄 从端口 {self._current_position} 切换到泵位置...")
return self.set_to_pump_position()
def get_flow_path(self) -> str:
"""获取当前流路路径描述 🌊"""
current_port = self.get_current_port()
if self._current_position == 0:
flow_path = f"🚰 转移泵已连接 (位置 {self._current_position})"
else:
flow_path = f"🔌 端口 {self._current_position} 已连接 ({current_port})"
# 删除debug日志self.logger.debug(f"🌊 当前流路: {flow_path}")
return flow_path
def get_info(self) -> dict:
"""获取阀门详细信息 📊"""
info = {
"port": self.port,
"max_positions": self.max_positions,
"total_positions": self.total_positions,
"current_position": self._current_position,
"current_port": self.get_current_port(),
"target_position": self._target_position,
"status": self._status,
"valve_state": self._valve_state,
"flow_path": self.get_flow_path(),
"position_map": self.position_map
}
# 删除debug日志self.logger.debug(f"📊 阀门信息: 位置={self._current_position}, 状态={self._status}, 端口={self.get_current_port()}")
return info
def __str__(self):
current_port = self.get_current_port()
status_emoji = "" if self._status == "Idle" else "🔄" if self._status == "Busy" else ""
return f"🔄 VirtualMultiwayValve({status_emoji} 位置: {self._current_position}/{self.max_positions}, 端口: {current_port}, 状态: {self._status})"
def set_valve_position(self, command: Union[int, str]):
"""
设置阀门位置 - 兼容pump_protocol调用 🎯
这是set_position的别名方法用于兼容pump_protocol.py
Args:
command: 目标位置 (0-8) 或位置字符串
"""
# 删除debug日志self.logger.debug(f"🎯 兼容性调用: set_valve_position({command})")
return self.set_position(command)
# 使用示例
if __name__ == "__main__":
valve = VirtualMultiwayValve()
print("🔄 === 虚拟九通阀门测试 === ✨")
print(f"🏠 初始状态: {valve}")
print(f"🌊 当前流路: {valve.get_flow_path()}")
# 切换到试剂瓶11号位
print(f"\n🔌 切换到1号位: {valve.set_position(1)}")
print(f"📍 当前状态: {valve}")
# 切换到transfer pump位置0号位
print(f"\n🚰 切换到pump位置: {valve.set_to_pump_position()}")
print(f"📍 当前状态: {valve}")
# 切换到试剂瓶22号位
print(f"\n🔌 切换到2号位: {valve.set_to_port(2)}")
print(f"📍 当前状态: {valve}")
# 显示所有可用位置
print(f"\n📋 可用位置: {valve.get_available_positions()}")
print(f"🗺️ 端口映射: {valve.get_available_ports()}")
# 获取详细信息
print(f"\n📊 详细信息: {valve.get_info()}")
# 测试切换功能
print(f"\n🔄 智能切换测试:")
print(f"当前位置: {valve._current_position}")
print(f"切换结果: {valve.switch_between_pump_and_port(3)}")
print(f"新位置: {valve._current_position}")
# 重置测试
print(f"\n🔄 重置测试: {valve.reset()}")
print(f"📍 重置后状态: {valve}")

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import asyncio
import logging
import time as time_module
from typing import Dict, Any, Optional
def debug_print(message):
"""调试输出 🔍"""
print(f"🌪️ [ROTAVAP] {message}", flush=True)
class VirtualRotavap:
"""Virtual rotary evaporator device - 简化版,只保留核心功能 🌪️"""
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
# 处理可能的不同调用方式
if device_id is None and "id" in kwargs:
device_id = kwargs.pop("id")
if config is None and "config" in kwargs:
config = kwargs.pop("config")
# 设置默认值
self.device_id = device_id or "unknown_rotavap"
self.config = config or {}
self.logger = logging.getLogger(f"VirtualRotavap.{self.device_id}")
self.data = {}
# 从config或kwargs中获取配置参数
self.port = self.config.get("port") or kwargs.get("port", "VIRTUAL")
self._max_temp = self.config.get("max_temp") or kwargs.get("max_temp", 180.0)
self._max_rotation_speed = self.config.get("max_rotation_speed") or kwargs.get("max_rotation_speed", 280.0)
# 处理其他kwargs参数
skip_keys = {"port", "max_temp", "max_rotation_speed"}
for key, value in kwargs.items():
if key not in skip_keys and not hasattr(self, key):
setattr(self, key, value)
print(f"🌪️ === 虚拟旋转蒸发仪 {self.device_id} 已创建 === ✨")
print(f"🔥 温度范围: 10°C ~ {self._max_temp}°C | 🌀 转速范围: 10 ~ {self._max_rotation_speed} RPM")
async def initialize(self) -> bool:
"""Initialize virtual rotary evaporator 🚀"""
self.logger.info(f"🔧 初始化虚拟旋转蒸发仪 {self.device_id}")
# 只保留核心状态
self.data.update({
"status": "🏠 待机中",
"rotavap_state": "Ready", # Ready, Evaporating, Completed, Error
"current_temp": 25.0,
"target_temp": 25.0,
"rotation_speed": 0.0,
"vacuum_pressure": 1.0, # 大气压
"evaporated_volume": 0.0,
"progress": 0.0,
"remaining_time": 0.0,
"message": "🌪️ Ready for evaporation"
})
self.logger.info(f"✅ 旋转蒸发仪 {self.device_id} 初始化完成 🌪️")
self.logger.info(f"📊 设备规格: 温度范围 10°C ~ {self._max_temp}°C | 转速范围 10 ~ {self._max_rotation_speed} RPM")
return True
async def cleanup(self) -> bool:
"""Cleanup virtual rotary evaporator 🧹"""
self.logger.info(f"🧹 清理虚拟旋转蒸发仪 {self.device_id} 🔚")
self.data.update({
"status": "💤 离线",
"rotavap_state": "Offline",
"current_temp": 25.0,
"rotation_speed": 0.0,
"vacuum_pressure": 1.0,
"message": "💤 System offline"
})
self.logger.info(f"✅ 旋转蒸发仪 {self.device_id} 清理完成 💤")
return True
async def evaporate(
self,
vessel: str,
pressure: float = 0.1,
temp: float = 60.0,
time: float = 180.0,
stir_speed: float = 100.0,
solvent: str = "",
**kwargs
) -> bool:
"""Execute evaporate action - 简化版 🌪️"""
# 🔧 简化处理如果vessel就是设备自己直接操作
if vessel == self.device_id:
debug_print(f"🎯 在设备 {self.device_id} 上直接执行蒸发操作")
actual_vessel = self.device_id
else:
actual_vessel = vessel
# 参数预处理
if solvent:
self.logger.info(f"🧪 识别到溶剂: {solvent}")
# 根据溶剂调整参数
solvent_lower = solvent.lower()
if any(s in solvent_lower for s in ['water', 'aqueous']):
temp = max(temp, 80.0)
pressure = max(pressure, 0.2)
self.logger.info(f"💧 水系溶剂:调整参数 → 温度 {temp}°C, 压力 {pressure} bar")
elif any(s in solvent_lower for s in ['ethanol', 'methanol', 'acetone']):
temp = min(temp, 50.0)
pressure = min(pressure, 0.05)
self.logger.info(f"⚡ 易挥发溶剂:调整参数 → 温度 {temp}°C, 压力 {pressure} bar")
self.logger.info(f"🌪️ 开始蒸发操作: {actual_vessel}")
self.logger.info(f" 🥽 容器: {actual_vessel}")
self.logger.info(f" 🌡️ 温度: {temp}°C")
self.logger.info(f" 💨 真空度: {pressure} bar")
self.logger.info(f" ⏰ 时间: {time}s")
self.logger.info(f" 🌀 转速: {stir_speed} RPM")
if solvent:
self.logger.info(f" 🧪 溶剂: {solvent}")
# 验证参数
if temp > self._max_temp or temp < 10.0:
error_msg = f"🌡️ 温度 {temp}°C 超出范围 (10-{self._max_temp}°C) ⚠️"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: 温度超出范围",
"rotavap_state": "Error",
"current_temp": 25.0,
"progress": 0.0,
"evaporated_volume": 0.0,
"message": error_msg
})
return False
if stir_speed > self._max_rotation_speed or stir_speed < 10.0:
error_msg = f"🌀 旋转速度 {stir_speed} RPM 超出范围 (10-{self._max_rotation_speed} RPM) ⚠️"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: 转速超出范围",
"rotavap_state": "Error",
"current_temp": 25.0,
"progress": 0.0,
"evaporated_volume": 0.0,
"message": error_msg
})
return False
if pressure < 0.01 or pressure > 1.0:
error_msg = f"💨 真空度 {pressure} bar 超出范围 (0.01-1.0 bar) ⚠️"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: 压力超出范围",
"rotavap_state": "Error",
"current_temp": 25.0,
"progress": 0.0,
"evaporated_volume": 0.0,
"message": error_msg
})
return False
# 开始蒸发
self.logger.info(f"🚀 启动蒸发程序! 预计用时 {time/60:.1f}分钟 ⏱️")
self.data.update({
"status": f"🌪️ 蒸发中: {actual_vessel}",
"rotavap_state": "Evaporating",
"current_temp": temp,
"target_temp": temp,
"rotation_speed": stir_speed,
"vacuum_pressure": pressure,
"remaining_time": time,
"progress": 0.0,
"evaporated_volume": 0.0,
"message": f"🌪️ Evaporating {actual_vessel} at {temp}°C, {pressure} bar, {stir_speed} RPM"
})
try:
# 蒸发过程 - 实时更新进度
start_time = time_module.time()
total_time = time
last_logged_progress = 0
while True:
current_time = time_module.time()
elapsed = current_time - start_time
remaining = max(0, total_time - elapsed)
progress = min(100.0, (elapsed / total_time) * 100)
# 模拟蒸发体积 - 根据溶剂类型调整
if solvent and any(s in solvent.lower() for s in ['water', 'aqueous']):
evaporated_vol = progress * 0.6 # 水系溶剂蒸发慢
elif solvent and any(s in solvent.lower() for s in ['ethanol', 'methanol', 'acetone']):
evaporated_vol = progress * 1.0 # 易挥发溶剂蒸发快
else:
evaporated_vol = progress * 0.8 # 默认蒸发量
# 🔧 更新状态 - 确保包含所有必需字段
status_msg = f"🌪️ 蒸发中: {actual_vessel} | 🌡️ {temp}°C | 💨 {pressure} bar | 🌀 {stir_speed} RPM | 📊 {progress:.1f}% | ⏰ 剩余: {remaining:.0f}s"
self.data.update({
"remaining_time": remaining,
"progress": progress,
"evaporated_volume": evaporated_vol,
"current_temp": temp,
"status": status_msg,
"message": f"🌪️ Evaporating: {progress:.1f}% complete, 💧 {evaporated_vol:.1f}mL evaporated, ⏰ {remaining:.0f}s remaining"
})
# 进度日志每25%打印一次)
if progress >= 25 and int(progress) % 25 == 0 and int(progress) != last_logged_progress:
self.logger.info(f"📊 蒸发进度: {progress:.0f}% | 💧 已蒸发: {evaporated_vol:.1f}mL | ⏰ 剩余: {remaining:.0f}s ✨")
last_logged_progress = int(progress)
# 时间到了,退出循环
if remaining <= 0:
break
# 每秒更新一次
await asyncio.sleep(1.0)
# 蒸发完成
if solvent and any(s in solvent.lower() for s in ['water', 'aqueous']):
final_evaporated = 60.0 # 水系溶剂
elif solvent and any(s in solvent.lower() for s in ['ethanol', 'methanol', 'acetone']):
final_evaporated = 100.0 # 易挥发溶剂
else:
final_evaporated = 80.0 # 默认
self.data.update({
"status": f"✅ 蒸发完成: {actual_vessel} | 💧 蒸发量: {final_evaporated:.1f}mL",
"rotavap_state": "Completed",
"evaporated_volume": final_evaporated,
"progress": 100.0,
"current_temp": temp,
"remaining_time": 0.0,
"rotation_speed": 0.0,
"vacuum_pressure": 1.0,
"message": f"✅ Evaporation completed: {final_evaporated}mL evaporated from {actual_vessel}"
})
self.logger.info(f"🎉 蒸发操作完成! ✨")
self.logger.info(f"📊 蒸发结果:")
self.logger.info(f" 🥽 容器: {actual_vessel}")
self.logger.info(f" 💧 蒸发量: {final_evaporated:.1f}mL")
self.logger.info(f" 🌡️ 蒸发温度: {temp}°C")
self.logger.info(f" 💨 真空度: {pressure} bar")
self.logger.info(f" 🌀 旋转速度: {stir_speed} RPM")
self.logger.info(f" ⏱️ 总用时: {total_time:.0f}s")
if solvent:
self.logger.info(f" 🧪 处理溶剂: {solvent} 🏁")
return True
except Exception as e:
# 出错处理
error_msg = f"蒸发过程中发生错误: {str(e)} 💥"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 蒸发错误: {str(e)}",
"rotavap_state": "Error",
"current_temp": 25.0,
"progress": 0.0,
"evaporated_volume": 0.0,
"rotation_speed": 0.0,
"vacuum_pressure": 1.0,
"message": f"❌ Evaporation failed: {str(e)}"
})
return False
# === 核心状态属性 ===
@property
def status(self) -> str:
return self.data.get("status", "❓ Unknown")
@property
def rotavap_state(self) -> str:
return self.data.get("rotavap_state", "Unknown")
@property
def current_temp(self) -> float:
return self.data.get("current_temp", 25.0)
@property
def rotation_speed(self) -> float:
return self.data.get("rotation_speed", 0.0)
@property
def vacuum_pressure(self) -> float:
return self.data.get("vacuum_pressure", 1.0)
@property
def evaporated_volume(self) -> float:
return self.data.get("evaporated_volume", 0.0)
@property
def progress(self) -> float:
return self.data.get("progress", 0.0)
@property
def message(self) -> str:
return self.data.get("message", "")
@property
def max_temp(self) -> float:
return self._max_temp
@property
def max_rotation_speed(self) -> float:
return self._max_rotation_speed
@property
def remaining_time(self) -> float:
return self.data.get("remaining_time", 0.0)

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import asyncio
import logging
from typing import Dict, Any, Optional
class VirtualSeparator:
"""Virtual separator device for SeparateProtocol testing"""
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
# 处理可能的不同调用方式
if device_id is None and "id" in kwargs:
device_id = kwargs.pop("id")
if config is None and "config" in kwargs:
config = kwargs.pop("config")
# 设置默认值
self.device_id = device_id or "unknown_separator"
self.config = config or {}
self.logger = logging.getLogger(f"VirtualSeparator.{self.device_id}")
self.data = {}
# 添加调试信息
print(f"=== VirtualSeparator {self.device_id} is being created! ===")
print(f"=== Config: {self.config} ===")
print(f"=== Kwargs: {kwargs} ===")
# 从config或kwargs中获取配置参数
self.port = self.config.get("port") or kwargs.get("port", "VIRTUAL")
self._volume = self.config.get("volume") or kwargs.get("volume", 250.0)
self._has_phases = self.config.get("has_phases") or kwargs.get("has_phases", True)
# 处理其他kwargs参数但跳过已知的配置参数
skip_keys = {"port", "volume", "has_phases"}
for key, value in kwargs.items():
if key not in skip_keys and not hasattr(self, key):
setattr(self, key, value)
async def initialize(self) -> bool:
"""Initialize virtual separator"""
print(f"=== VirtualSeparator {self.device_id} initialize() called! ===")
self.logger.info(f"Initializing virtual separator {self.device_id}")
self.data.update(
{
"status": "Ready",
"separator_state": "Ready",
"volume": self._volume,
"has_phases": self._has_phases,
"phase_separation": False,
"stir_speed": 0.0,
"settling_time": 0.0,
"progress": 0.0,
"message": "",
}
)
return True
async def cleanup(self) -> bool:
"""Cleanup virtual separator"""
self.logger.info(f"Cleaning up virtual separator {self.device_id}")
return True
async def separate(
self,
purpose: str,
product_phase: str,
from_vessel: str,
separation_vessel: str,
to_vessel: str,
waste_phase_to_vessel: str = "",
solvent: str = "",
solvent_volume: float = 50.0,
through: str = "",
repeats: int = 1,
stir_time: float = 30.0,
stir_speed: float = 300.0,
settling_time: float = 300.0,
) -> bool:
"""Execute separate action - matches Separate action"""
self.logger.info(f"Separate: purpose={purpose}, product_phase={product_phase}, from_vessel={from_vessel}")
# 验证参数
if product_phase not in ["top", "bottom"]:
self.logger.error(f"Invalid product_phase {product_phase}, must be 'top' or 'bottom'")
self.data["message"] = f"产物相位 {product_phase} 无效,必须是 'top''bottom'"
return False
if purpose not in ["wash", "extract"]:
self.logger.error(f"Invalid purpose {purpose}, must be 'wash' or 'extract'")
self.data["message"] = f"分离目的 {purpose} 无效,必须是 'wash''extract'"
return False
# 开始分离
self.data.update(
{
"status": "Running",
"separator_state": "Separating",
"purpose": purpose,
"product_phase": product_phase,
"from_vessel": from_vessel,
"separation_vessel": separation_vessel,
"to_vessel": to_vessel,
"waste_phase_to_vessel": waste_phase_to_vessel,
"solvent": solvent,
"solvent_volume": solvent_volume,
"repeats": repeats,
"stir_speed": stir_speed,
"settling_time": settling_time,
"phase_separation": True,
"progress": 0.0,
"message": f"正在分离: {from_vessel} -> {to_vessel}",
}
)
# 模拟分离过程
total_time = (stir_time + settling_time) * repeats
simulation_time = min(total_time / 60.0, 15.0) # 最多模拟15秒
for repeat in range(repeats):
# 搅拌阶段
for progress in range(0, 51, 10):
await asyncio.sleep(simulation_time / (repeats * 10))
overall_progress = ((repeat * 100) + (progress * 0.5)) / repeats
self.data["progress"] = overall_progress
self.data["message"] = f"{repeat+1}次分离 - 搅拌中 ({progress}%)"
# 静置分相阶段
for progress in range(50, 101, 10):
await asyncio.sleep(simulation_time / (repeats * 10))
overall_progress = ((repeat * 100) + (progress * 0.5)) / repeats
self.data["progress"] = overall_progress
self.data["message"] = f"{repeat+1}次分离 - 静置分相中 ({progress}%)"
# 分离完成
self.data.update(
{
"status": "Ready",
"separator_state": "Ready",
"phase_separation": False,
"stir_speed": 0.0,
"progress": 100.0,
"message": f"分离完成: {repeats}次分离操作",
}
)
self.logger.info(f"Separation completed: {repeats} cycles from {from_vessel} to {to_vessel}")
return True
# 状态属性
@property
def status(self) -> str:
return self.data.get("status", "Unknown")
@property
def separator_state(self) -> str:
return self.data.get("separator_state", "Unknown")
@property
def volume(self) -> float:
return self.data.get("volume", self._volume)
@property
def has_phases(self) -> bool:
return self.data.get("has_phases", self._has_phases)
@property
def phase_separation(self) -> bool:
return self.data.get("phase_separation", False)
@property
def stir_speed(self) -> float:
return self.data.get("stir_speed", 0.0)
@property
def settling_time(self) -> float:
return self.data.get("settling_time", 0.0)
@property
def progress(self) -> float:
return self.data.get("progress", 0.0)
@property
def message(self) -> str:
return self.data.get("message", "")

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import time
import asyncio
from typing import Union
class VirtualSolenoidValve:
"""
虚拟电磁阀门 - 简单的开关型阀门,只有开启和关闭两个状态
"""
def __init__(self, device_id: str = None, config: dict = None, **kwargs):
# 从配置中获取参数,提供默认值
if config is None:
config = {}
self.device_id = device_id
self.port = config.get("port", "VIRTUAL")
self.voltage = config.get("voltage", 12.0)
self.response_time = config.get("response_time", 0.1)
# 状态属性
self._status = "Idle"
self._valve_state = "Closed" # "Open" or "Closed"
self._is_open = False
async def initialize(self) -> bool:
"""初始化设备"""
self._status = "Idle"
return True
async def cleanup(self) -> bool:
"""清理资源"""
return True
@property
def status(self) -> str:
return self._status
@property
def valve_state(self) -> str:
return self._valve_state
@property
def is_open(self) -> bool:
return self._is_open
@property
def valve_position(self) -> str:
"""获取阀门位置状态"""
return "OPEN" if self._is_open else "CLOSED"
@property
def state(self) -> dict:
"""获取阀门完整状态"""
return {
"device_id": self.device_id,
"port": self.port,
"voltage": self.voltage,
"response_time": self.response_time,
"is_open": self._is_open,
"valve_state": self._valve_state,
"status": self._status,
"position": self.valve_position
}
async def set_valve_position(self, command: str = None, **kwargs):
"""
设置阀门位置 - ROS动作接口
Args:
command: "OPEN"/"CLOSED" 或其他控制命令
"""
if command is None:
return {"success": False, "message": "Missing command parameter"}
print(f"SOLENOID_VALVE: {self.device_id} 接收到命令: {command}")
self._status = "Busy"
# 模拟阀门响应时间
await asyncio.sleep(self.response_time)
# 处理不同的命令格式
if isinstance(command, str):
cmd_upper = command.upper()
if cmd_upper in ["OPEN", "ON", "TRUE", "1"]:
self._is_open = True
self._valve_state = "Open"
result_msg = f"Valve {self.device_id} opened"
elif cmd_upper in ["CLOSED", "CLOSE", "OFF", "FALSE", "0"]:
self._is_open = False
self._valve_state = "Closed"
result_msg = f"Valve {self.device_id} closed"
else:
# 可能是端口名称,处理路径设置
# 对于简单电磁阀,任何非关闭命令都视为开启
self._is_open = True
self._valve_state = "Open"
result_msg = f"Valve {self.device_id} set to position: {command}"
else:
self._status = "Error"
return {"success": False, "message": "Invalid command type"}
self._status = "Idle"
print(f"SOLENOID_VALVE: {result_msg}")
return {
"success": True,
"message": result_msg,
"valve_position": self.valve_position
}
async def open(self, **kwargs):
"""打开电磁阀 - ROS动作接口"""
return await self.set_valve_position(command="OPEN")
async def close(self, **kwargs):
"""关闭电磁阀 - ROS动作接口"""
return await self.set_valve_position(command="CLOSED")
async def set_status(self, string: str = None, **kwargs):
"""
设置阀门状态 - 兼容 StrSingleInput 类型
Args:
string: "ON"/"OFF""OPEN"/"CLOSED"
"""
if string is None:
return {"success": False, "message": "Missing string parameter"}
# 将 string 参数转换为 command 参数
if string.upper() in ["ON", "OPEN"]:
command = "OPEN"
elif string.upper() in ["OFF", "CLOSED"]:
command = "CLOSED"
else:
command = string
return await self.set_valve_position(command=command)
def toggle(self):
"""切换阀门状态"""
if self._is_open:
return self.close()
else:
return self.open()
def is_closed(self) -> bool:
"""检查阀门是否关闭"""
return not self._is_open
async def reset(self):
"""重置阀门到关闭状态"""
return await self.close()

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import asyncio
import logging
import re
from typing import Dict, Any, Optional
class VirtualSolidDispenser:
"""
虚拟固体粉末加样器 - 用于处理 Add Protocol 中的固体试剂添加 ⚗️
特点:
- 高兼容性:缺少参数不报错 ✅
- 智能识别:自动查找固体试剂瓶 🔍
- 简单反馈:成功/失败 + 消息 📊
"""
def __init__(self, device_id: str = None, config: Dict[str, Any] = None, **kwargs):
self.device_id = device_id or "virtual_solid_dispenser"
self.config = config or {}
# 设备参数
self.max_capacity = float(self.config.get('max_capacity', 100.0)) # 最大加样量 (g)
self.precision = float(self.config.get('precision', 0.001)) # 精度 (g)
# 状态变量
self._status = "Idle"
self._current_reagent = ""
self._dispensed_amount = 0.0
self._total_operations = 0
self.logger = logging.getLogger(f"VirtualSolidDispenser.{self.device_id}")
print(f"⚗️ === 虚拟固体分配器 {self.device_id} 创建成功! === ✨")
print(f"📊 设备规格: 最大容量 {self.max_capacity}g | 精度 {self.precision}g 🎯")
async def initialize(self) -> bool:
"""初始化固体加样器 🚀"""
self.logger.info(f"🔧 初始化固体分配器 {self.device_id}")
self._status = "Ready"
self._current_reagent = ""
self._dispensed_amount = 0.0
self.logger.info(f"✅ 固体分配器 {self.device_id} 初始化完成 ⚗️")
return True
async def cleanup(self) -> bool:
"""清理固体加样器 🧹"""
self.logger.info(f"🧹 清理固体分配器 {self.device_id} 🔚")
self._status = "Idle"
self.logger.info(f"✅ 固体分配器 {self.device_id} 清理完成 💤")
return True
def parse_mass_string(self, mass_str: str) -> float:
"""
解析质量字符串为数值 (g) ⚖️
支持格式: "2.9 g", "19.3g", "4.5 mg", "1.2 kg"
"""
if not mass_str or not isinstance(mass_str, str):
return 0.0
# 移除空格并转小写
mass_clean = mass_str.strip().lower()
# 正则匹配数字和单位
pattern = r'(\d+(?:\.\d+)?)\s*([a-z]*)'
match = re.search(pattern, mass_clean)
if not match:
self.logger.debug(f"🔍 无法解析质量字符串: {mass_str}")
return 0.0
try:
value = float(match.group(1))
unit = match.group(2) or 'g' # 默认单位 g
# 单位转换为 g
unit_multipliers = {
'g': 1.0,
'gram': 1.0,
'grams': 1.0,
'mg': 0.001,
'milligram': 0.001,
'milligrams': 0.001,
'kg': 1000.0,
'kilogram': 1000.0,
'kilograms': 1000.0,
'μg': 0.000001,
'ug': 0.000001,
'microgram': 0.000001,
'micrograms': 0.000001,
}
multiplier = unit_multipliers.get(unit, 1.0)
result = value * multiplier
self.logger.debug(f"⚖️ 质量解析: {mass_str}{result:.6f}g (原值: {value} {unit})")
return result
except (ValueError, TypeError):
self.logger.warning(f"⚠️ 无法解析质量字符串: {mass_str}")
return 0.0
def parse_mol_string(self, mol_str: str) -> float:
"""
解析摩尔数字符串为数值 (mol) 🧮
支持格式: "0.12 mol", "16.2 mmol", "25.2mmol"
"""
if not mol_str or not isinstance(mol_str, str):
return 0.0
# 移除空格并转小写
mol_clean = mol_str.strip().lower()
# 正则匹配数字和单位
pattern = r'(\d+(?:\.\d+)?)\s*(m?mol)'
match = re.search(pattern, mol_clean)
if not match:
self.logger.debug(f"🔍 无法解析摩尔数字符串: {mol_str}")
return 0.0
try:
value = float(match.group(1))
unit = match.group(2)
# 单位转换为 mol
if unit == 'mmol':
result = value * 0.001
else: # mol
result = value
self.logger.debug(f"🧮 摩尔数解析: {mol_str}{result:.6f}mol (原值: {value} {unit})")
return result
except (ValueError, TypeError):
self.logger.warning(f"⚠️ 无法解析摩尔数字符串: {mol_str}")
return 0.0
def find_solid_reagent_bottle(self, reagent_name: str) -> str:
"""
查找固体试剂瓶 🔍
这是一个简化版本,实际使用时应该连接到系统的设备图
"""
if not reagent_name:
self.logger.debug(f"🔍 未指定试剂名称,使用默认瓶")
return "unknown_solid_bottle"
# 可能的固体试剂瓶命名模式
possible_names = [
f"solid_bottle_{reagent_name}",
f"reagent_solid_{reagent_name}",
f"powder_{reagent_name}",
f"{reagent_name}_solid",
f"{reagent_name}_powder",
f"solid_{reagent_name}",
]
# 这里简化处理,实际应该查询设备图
selected_bottle = possible_names[0]
self.logger.debug(f"🔍 为试剂 {reagent_name} 选择试剂瓶: {selected_bottle}")
return selected_bottle
async def add_solid(
self,
vessel: str,
reagent: str,
mass: str = "",
mol: str = "",
purpose: str = "",
**kwargs # 兼容额外参数
) -> Dict[str, Any]:
"""
添加固体试剂的主要方法 ⚗️
Args:
vessel: 目标容器
reagent: 试剂名称
mass: 质量字符串 (如 "2.9 g")
mol: 摩尔数字符串 (如 "0.12 mol")
purpose: 添加目的
**kwargs: 其他兼容参数
Returns:
Dict: 操作结果
"""
try:
self.logger.info(f"⚗️ === 开始固体加样操作 === ✨")
self.logger.info(f" 🥽 目标容器: {vessel}")
self.logger.info(f" 🧪 试剂: {reagent}")
self.logger.info(f" ⚖️ 质量: {mass}")
self.logger.info(f" 🧮 摩尔数: {mol}")
self.logger.info(f" 📝 目的: {purpose}")
# 参数验证 - 宽松处理
if not vessel:
vessel = "main_reactor" # 默认容器
self.logger.warning(f"⚠️ 未指定容器,使用默认容器: {vessel} 🏠")
if not reagent:
error_msg = "❌ 错误: 必须指定试剂名称"
self.logger.error(error_msg)
return {
"success": False,
"message": error_msg,
"return_info": "missing_reagent"
}
# 解析质量和摩尔数
mass_value = self.parse_mass_string(mass)
mol_value = self.parse_mol_string(mol)
self.logger.info(f"📊 解析结果 - 质量: {mass_value:.6f}g | 摩尔数: {mol_value:.6f}mol")
# 确定实际加样量
if mass_value > 0:
actual_amount = mass_value
amount_unit = "g"
amount_emoji = "⚖️"
self.logger.info(f"⚖️ 按质量加样: {actual_amount:.6f} {amount_unit}")
elif mol_value > 0:
# 简化处理假设分子量为100 g/mol
assumed_mw = 100.0
actual_amount = mol_value * assumed_mw
amount_unit = "g (from mol)"
amount_emoji = "🧮"
self.logger.info(f"🧮 按摩尔数加样: {mol_value:.6f} mol → {actual_amount:.6f} g (假设分子量 {assumed_mw})")
else:
# 没有指定量,使用默认值
actual_amount = 1.0
amount_unit = "g (default)"
amount_emoji = "🎯"
self.logger.warning(f"⚠️ 未指定质量或摩尔数,使用默认值: {actual_amount} {amount_unit} 🎯")
# 检查容量限制
if actual_amount > self.max_capacity:
error_msg = f"❌ 错误: 请求量 {actual_amount:.3f}g 超过最大容量 {self.max_capacity}g"
self.logger.error(error_msg)
return {
"success": False,
"message": error_msg,
"return_info": "exceeds_capacity"
}
# 查找试剂瓶
reagent_bottle = self.find_solid_reagent_bottle(reagent)
self.logger.info(f"🔍 使用试剂瓶: {reagent_bottle}")
# 模拟加样过程
self._status = "Dispensing"
self._current_reagent = reagent
# 计算操作时间 (基于质量)
operation_time = max(0.5, actual_amount * 0.1) # 每克0.1秒最少0.5秒
self.logger.info(f"🚀 开始加样,预计时间: {operation_time:.1f}秒 ⏱️")
# 显示进度的模拟
steps = max(3, int(operation_time))
step_time = operation_time / steps
for i in range(steps):
progress = (i + 1) / steps * 100
await asyncio.sleep(step_time)
if i % 2 == 0: # 每隔一步显示进度
self.logger.debug(f"📊 加样进度: {progress:.0f}% | {amount_emoji} 正在分配 {reagent}...")
# 更新状态
self._dispensed_amount = actual_amount
self._total_operations += 1
self._status = "Ready"
# 成功结果
success_message = f"✅ 成功添加 {reagent} {actual_amount:.6f} {amount_unit}{vessel}"
self.logger.info(f"🎉 === 固体加样完成 === ✨")
self.logger.info(f"📊 操作结果:")
self.logger.info(f"{success_message}")
self.logger.info(f" 🧪 试剂瓶: {reagent_bottle}")
self.logger.info(f" ⏱️ 用时: {operation_time:.1f}")
self.logger.info(f" 🎯 总操作次数: {self._total_operations} 🏁")
return {
"success": True,
"message": success_message,
"return_info": f"dispensed_{actual_amount:.6f}g",
"dispensed_amount": actual_amount,
"reagent": reagent,
"vessel": vessel
}
except Exception as e:
error_message = f"❌ 固体加样失败: {str(e)} 💥"
self.logger.error(error_message)
self._status = "Error"
return {
"success": False,
"message": error_message,
"return_info": "operation_failed"
}
# 状态属性
@property
def status(self) -> str:
return self._status
@property
def current_reagent(self) -> str:
return self._current_reagent
@property
def dispensed_amount(self) -> float:
return self._dispensed_amount
@property
def total_operations(self) -> int:
return self._total_operations
def get_device_info(self) -> Dict[str, Any]:
"""获取设备状态信息 📊"""
info = {
"device_id": self.device_id,
"status": self._status,
"current_reagent": self._current_reagent,
"last_dispensed_amount": self._dispensed_amount,
"total_operations": self._total_operations,
"max_capacity": self.max_capacity,
"precision": self.precision
}
self.logger.debug(f"📊 设备信息: 状态={self._status}, 试剂={self._current_reagent}, 加样量={self._dispensed_amount:.6f}g")
return info
def __str__(self):
status_emoji = "" if self._status == "Ready" else "🔄" if self._status == "Dispensing" else "" if self._status == "Error" else "🏠"
return f"⚗️ VirtualSolidDispenser({status_emoji} {self.device_id}: {self._status}, 最后加样 {self._dispensed_amount:.3f}g)"
# 测试函数
async def test_solid_dispenser():
"""测试固体加样器 🧪"""
print("⚗️ === 固体加样器测试开始 === 🧪")
dispenser = VirtualSolidDispenser("test_dispenser")
await dispenser.initialize()
# 测试1: 按质量加样
print(f"\n🧪 测试1: 按质量加样...")
result1 = await dispenser.add_solid(
vessel="main_reactor",
reagent="magnesium",
mass="2.9 g"
)
print(f"📊 测试1结果: {result1}")
# 测试2: 按摩尔数加样
print(f"\n🧮 测试2: 按摩尔数加样...")
result2 = await dispenser.add_solid(
vessel="main_reactor",
reagent="sodium_nitrite",
mol="0.28 mol"
)
print(f"📊 测试2结果: {result2}")
# 测试3: 缺少参数
print(f"\n⚠️ 测试3: 缺少参数测试...")
result3 = await dispenser.add_solid(
reagent="test_compound"
)
print(f"📊 测试3结果: {result3}")
# 测试4: 超容量测试
print(f"\n❌ 测试4: 超容量测试...")
result4 = await dispenser.add_solid(
vessel="main_reactor",
reagent="heavy_compound",
mass="150 g" # 超过100g限制
)
print(f"📊 测试4结果: {result4}")
print(f"\n📊 最终设备信息: {dispenser.get_device_info()}")
print(f"✅ === 测试完成 === 🎉")
if __name__ == "__main__":
asyncio.run(test_solid_dispenser())

View File

@@ -1,9 +1,10 @@
import asyncio
import logging
import time as time_module
from typing import Dict, Any
class VirtualStirrer:
"""Virtual stirrer device for StirProtocol testing"""
"""Virtual stirrer device for StirProtocol testing - 功能完整版 🌪️"""
def __init__(self, device_id: str = None, config: Dict[str, Any] = None, **kwargs):
# 处理可能的不同调用方式
@@ -19,86 +20,310 @@ class VirtualStirrer:
self.logger = logging.getLogger(f"VirtualStirrer.{self.device_id}")
self.data = {}
# 添加调试信息
print(f"=== VirtualStirrer {self.device_id} is being created! ===")
print(f"=== Config: {self.config} ===")
print(f"=== Kwargs: {kwargs} ===")
# 从config或kwargs中获取配置参数
self.port = self.config.get('port') or kwargs.get('port', 'VIRTUAL')
self._max_temp = self.config.get('max_temp') or kwargs.get('max_temp', 100.0)
self._max_speed = self.config.get('max_speed') or kwargs.get('max_speed', 1000.0)
self._max_speed = self.config.get('max_speed') or kwargs.get('max_speed', 1500.0)
self._min_speed = self.config.get('min_speed') or kwargs.get('min_speed', 50.0)
# 处理其他kwargs参数,但跳过已知的配置参数
skip_keys = {'port', 'max_temp', 'max_speed'}
# 处理其他kwargs参数
skip_keys = {'port', 'max_speed', 'min_speed'}
for key, value in kwargs.items():
if key not in skip_keys and not hasattr(self, key):
setattr(self, key, value)
print(f"🌪️ === 虚拟搅拌器 {self.device_id} 已创建 === ✨")
print(f"🔧 速度范围: {self._min_speed} ~ {self._max_speed} RPM | 📱 端口: {self.port}")
async def initialize(self) -> bool:
"""Initialize virtual stirrer"""
print(f"=== VirtualStirrer {self.device_id} initialize() called! ===")
self.logger.info(f"Initializing virtual stirrer {self.device_id}")
"""Initialize virtual stirrer 🚀"""
self.logger.info(f"🔧 初始化虚拟搅拌器 {self.device_id} ")
# 初始化状态信息
self.data.update({
"status": "Idle"
"status": "🏠 待机中",
"operation_mode": "Idle", # 操作模式: Idle, Stirring, Settling, Completed, Error
"current_vessel": "", # 当前搅拌的容器
"current_speed": 0.0, # 当前搅拌速度
"is_stirring": False, # 是否正在搅拌
"remaining_time": 0.0, # 剩余时间
})
self.logger.info(f"✅ 搅拌器 {self.device_id} 初始化完成 🌪️")
self.logger.info(f"📊 设备规格: 速度范围 {self._min_speed} ~ {self._max_speed} RPM")
return True
async def cleanup(self) -> bool:
"""Cleanup virtual stirrer"""
self.logger.info(f"Cleaning up virtual stirrer {self.device_id}")
"""Cleanup virtual stirrer 🧹"""
self.logger.info(f"🧹 清理虚拟搅拌器 {self.device_id} 🔚")
self.data.update({
"status": "💤 离线",
"operation_mode": "Offline",
"current_vessel": "",
"current_speed": 0.0,
"is_stirring": False,
"remaining_time": 0.0,
})
self.logger.info(f"✅ 搅拌器 {self.device_id} 清理完成 💤")
return True
async def stir(self, stir_time: float, stir_speed: float, settling_time: float) -> bool:
"""Execute stir action - matches Stir action exactly"""
self.logger.info(f"Stir: speed={stir_speed} RPM, time={stir_time}s, settling={settling_time}s")
async def stir(self, stir_time: float, stir_speed: float, settling_time: float, **kwargs) -> bool:
"""Execute stir action - 定时搅拌 + 沉降 🌪️"""
# 验证参数
if stir_speed > self._max_speed:
self.logger.error(f"Stir speed {stir_speed} exceeds maximum {self._max_speed}")
self.data["status"] = f"搅拌速度 {stir_speed} 超出范围"
# 🔧 类型转换 - 确保所有参数都是数字类型
try:
stir_time = float(stir_time)
stir_speed = float(stir_speed)
settling_time = float(settling_time)
except (ValueError, TypeError) as e:
error_msg = f"参数类型转换失败: stir_time={stir_time}, stir_speed={stir_speed}, settling_time={settling_time}, error={e}"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: {error_msg}",
"operation_mode": "Error"
})
return False
# 开始搅拌
self.data["status"] = f"搅拌中: {stir_speed} RPM, {stir_time}s"
self.logger.info(f"🌪️ 开始搅拌操作: 速度 {stir_speed} RPM | 时间 {stir_time}s | 沉降 {settling_time}s")
# 模拟搅拌时间
simulation_time = min(stir_time, 10.0) # 最多等待10秒用于测试
await asyncio.sleep(simulation_time)
# 验证参数
if stir_speed > self._max_speed or stir_speed < self._min_speed:
error_msg = f"🌪️ 搅拌速度 {stir_speed} RPM 超出范围 ({self._min_speed} - {self._max_speed} RPM) ⚠️"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: 速度超出范围",
"operation_mode": "Error"
})
return False
# 搅拌完成,开始沉降
# === 第一阶段:搅拌 ===
start_time = time_module.time()
total_stir_time = stir_time
self.logger.info(f"🚀 开始搅拌阶段: {stir_speed} RPM × {total_stir_time}s ⏱️")
self.data.update({
"status": f"🌪️ 搅拌中: {stir_speed} RPM | ⏰ 剩余: {total_stir_time:.0f}s",
"operation_mode": "Stirring",
"current_speed": stir_speed,
"is_stirring": True,
"remaining_time": total_stir_time,
})
# 搅拌过程 - 实时更新剩余时间
last_logged_time = 0
while True:
current_time = time_module.time()
elapsed = current_time - start_time
remaining = max(0, total_stir_time - elapsed)
progress = (elapsed / total_stir_time) * 100 if total_stir_time > 0 else 100
# 更新状态
self.data.update({
"remaining_time": remaining,
"status": f"🌪️ 搅拌中: {stir_speed} RPM | ⏰ 剩余: {remaining:.0f}s"
})
# 进度日志每25%打印一次)
if progress >= 25 and int(progress) % 25 == 0 and int(progress) != last_logged_time:
self.logger.info(f"📊 搅拌进度: {progress:.0f}% | 🌪️ {stir_speed} RPM | ⏰ 剩余: {remaining:.0f}s ✨")
last_logged_time = int(progress)
# 搅拌时间到了
if remaining <= 0:
break
await asyncio.sleep(1.0)
self.logger.info(f"✅ 搅拌阶段完成! 🌪️ {stir_speed} RPM × {stir_time}s")
# === 第二阶段:沉降(如果需要)===
if settling_time > 0:
self.data["status"] = f"沉降中: {settling_time}s"
settling_simulation = min(settling_time, 5.0) # 最多等待5秒
await asyncio.sleep(settling_simulation)
start_settling_time = time_module.time()
total_settling_time = settling_time
self.logger.info(f"🛑 开始沉降阶段: 停止搅拌 × {total_settling_time}s ⏱️")
self.data.update({
"status": f"🛑 沉降中: 停止搅拌 | ⏰ 剩余: {total_settling_time:.0f}s",
"operation_mode": "Settling",
"current_speed": 0.0,
"is_stirring": False,
"remaining_time": total_settling_time,
})
# 沉降过程 - 实时更新剩余时间
last_logged_settling = 0
while True:
current_time = time_module.time()
elapsed = current_time - start_settling_time
remaining = max(0, total_settling_time - elapsed)
progress = (elapsed / total_settling_time) * 100 if total_settling_time > 0 else 100
# 更新状态
self.data.update({
"remaining_time": remaining,
"status": f"🛑 沉降中: 停止搅拌 | ⏰ 剩余: {remaining:.0f}s"
})
# 进度日志每25%打印一次)
if progress >= 25 and int(progress) % 25 == 0 and int(progress) != last_logged_settling:
self.logger.info(f"📊 沉降进度: {progress:.0f}% | 🛑 静置中 | ⏰ 剩余: {remaining:.0f}s ✨")
last_logged_settling = int(progress)
# 沉降时间到了
if remaining <= 0:
break
await asyncio.sleep(1.0)
self.logger.info(f"✅ 沉降阶段完成! 🛑 静置 {settling_time}s")
# 操作完成
self.data["status"] = "搅拌完成"
# === 操作完成 ===
settling_info = f" | 🛑 沉降: {settling_time:.0f}s" if settling_time > 0 else ""
self.data.update({
"status": f"✅ 完成: 🌪️ 搅拌 {stir_speed} RPM × {stir_time:.0f}s{settling_info}",
"operation_mode": "Completed",
"current_speed": 0.0,
"is_stirring": False,
"remaining_time": 0.0,
})
self.logger.info(f"🎉 搅拌操作完成! ✨")
self.logger.info(f"📊 操作总结:")
self.logger.info(f" 🌪️ 搅拌: {stir_speed} RPM × {stir_time}s")
if settling_time > 0:
self.logger.info(f" 🛑 沉降: {settling_time}s")
self.logger.info(f" ⏱️ 总用时: {(stir_time + settling_time):.0f}s 🏁")
self.logger.info(f"Stir completed: {stir_speed} RPM for {stir_time}s")
return True
async def start_stir(self, vessel: str, stir_speed: float, purpose: str) -> bool:
"""Start stir action - matches StartStir action exactly"""
self.logger.info(f"StartStir: vessel={vessel}, speed={stir_speed} RPM, purpose={purpose}")
async def start_stir(self, vessel: str, stir_speed: float, purpose: str = "") -> bool:
"""Start stir action - 开始持续搅拌 🔄"""
# 验证参数
if stir_speed > self._max_speed:
self.logger.error(f"Stir speed {stir_speed} exceeds maximum {self._max_speed}")
self.data["status"] = f"搅拌速度 {stir_speed} 超出范围"
# 🔧 类型转换
try:
stir_speed = float(stir_speed)
vessel = str(vessel)
purpose = str(purpose)
except (ValueError, TypeError) as e:
error_msg = f"参数类型转换错误: {str(e)}"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: {error_msg}",
"operation_mode": "Error"
})
return False
self.data["status"] = f"开始搅拌: {vessel} at {stir_speed} RPM"
self.logger.info(f"🔄 启动持续搅拌: {vessel} | 🌪️ {stir_speed} RPM")
if purpose:
self.logger.info(f"📝 搅拌目的: {purpose}")
# 验证参数
if stir_speed > self._max_speed or stir_speed < self._min_speed:
error_msg = f"🌪️ 搅拌速度 {stir_speed} RPM 超出范围 ({self._min_speed} - {self._max_speed} RPM) ⚠️"
self.logger.error(f"{error_msg}")
self.data.update({
"status": f"❌ 错误: 速度超出范围",
"operation_mode": "Error"
})
return False
purpose_info = f" | 📝 {purpose}" if purpose else ""
self.data.update({
"status": f"🔄 启动: 持续搅拌 {vessel} | 🌪️ {stir_speed} RPM{purpose_info}",
"operation_mode": "Stirring",
"current_vessel": vessel,
"current_speed": stir_speed,
"is_stirring": True,
"remaining_time": -1.0, # -1 表示持续运行
})
self.logger.info(f"✅ 持续搅拌已启动! 🌪️ {stir_speed} RPM × ♾️ 🚀")
return True
async def stop_stir(self, vessel: str) -> bool:
"""Stop stir action - matches StopStir action exactly"""
self.logger.info(f"StopStir: vessel={vessel}")
"""Stop stir action - 停止搅拌 🛑"""
self.data["status"] = f"停止搅拌: {vessel}"
# 🔧 类型转换
try:
vessel = str(vessel)
except (ValueError, TypeError) as e:
error_msg = f"参数类型转换错误: {str(e)}"
self.logger.error(f"{error_msg}")
return False
current_speed = self.data.get("current_speed", 0.0)
self.logger.info(f"🛑 停止搅拌: {vessel}")
if current_speed > 0:
self.logger.info(f"🌪️ 之前搅拌速度: {current_speed} RPM")
self.data.update({
"status": f"🛑 已停止: {vessel} 搅拌停止 | 之前速度: {current_speed} RPM",
"operation_mode": "Stopped",
"current_vessel": "",
"current_speed": 0.0,
"is_stirring": False,
"remaining_time": 0.0,
})
self.logger.info(f"✅ 搅拌器已停止 {vessel} 的搅拌操作 🏁")
return True
# 状态属性 - 只保留 action 中定义的 feedback
# 状态属性
@property
def status(self) -> str:
return self.data.get("status", "Idle")
return self.data.get("status", "🏠 待机中")
@property
def operation_mode(self) -> str:
return self.data.get("operation_mode", "Idle")
@property
def current_vessel(self) -> str:
return self.data.get("current_vessel", "")
@property
def current_speed(self) -> float:
return self.data.get("current_speed", 0.0)
@property
def is_stirring(self) -> bool:
return self.data.get("is_stirring", False)
@property
def remaining_time(self) -> float:
return self.data.get("remaining_time", 0.0)
@property
def max_speed(self) -> float:
return self._max_speed
@property
def min_speed(self) -> float:
return self._min_speed
def get_device_info(self) -> Dict[str, Any]:
"""获取设备状态信息 📊"""
info = {
"device_id": self.device_id,
"status": self.status,
"operation_mode": self.operation_mode,
"current_vessel": self.current_vessel,
"current_speed": self.current_speed,
"is_stirring": self.is_stirring,
"remaining_time": self.remaining_time,
"max_speed": self._max_speed,
"min_speed": self._min_speed
}
self.logger.debug(f"📊 设备信息: 模式={self.operation_mode}, 速度={self.current_speed} RPM, 搅拌={self.is_stirring}")
return info
def __str__(self):
status_emoji = "" if self.operation_mode == "Idle" else "🌪️" if self.operation_mode == "Stirring" else "🛑" if self.operation_mode == "Settling" else ""
return f"🌪️ VirtualStirrer({status_emoji} {self.device_id}: {self.operation_mode}, {self.current_speed} RPM)"

View File

@@ -1,149 +1,433 @@
import asyncio
import time
from enum import Enum
from typing import Union, Optional
import logging
from typing import Dict, Any, Optional
class VirtualPumpMode(Enum):
Normal = 0
AccuratePos = 1
AccuratePosVel = 2
class VirtualTransferPump:
"""Virtual pump device specifically for Transfer protocol"""
"""虚拟转移泵类 - 模拟泵的基本功能,无需实际硬件 🚰"""
def __init__(self, device_id: str = None, config: Dict[str, Any] = None, **kwargs):
# 处理可能的不同调用方式
if device_id is None and 'id' in kwargs:
device_id = kwargs.pop('id')
if config is None and 'config' in kwargs:
config = kwargs.pop('config')
def __init__(self, device_id: str = None, config: dict = None, **kwargs):
"""
初始化虚拟转移泵
# 设置默认值
self.device_id = device_id or "unknown_transfer_pump"
self.config = config or {}
Args:
device_id: 设备ID
config: 配置字典包含max_volume, port等参数
**kwargs: 其他参数,确保兼容性
"""
self.device_id = device_id or "virtual_transfer_pump"
# 从config或kwargs中获取参数确保类型正确
if config:
self.max_volume = float(config.get('max_volume', 25.0))
self.port = config.get('port', 'VIRTUAL')
else:
self.max_volume = float(kwargs.get('max_volume', 25.0))
self.port = kwargs.get('port', 'VIRTUAL')
self._transfer_rate = float(kwargs.get('transfer_rate', 0))
self.mode = kwargs.get('mode', VirtualPumpMode.Normal)
# 状态变量 - 确保都是正确类型
self._status = "Idle"
self._position = 0.0 # float
self._max_velocity = 5.0 # float
self._current_volume = 0.0 # float
# 🚀 新增:快速模式设置 - 大幅缩短执行时间
self._fast_mode = True # 是否启用快速模式
self._fast_move_time = 1.0 # 快速移动时间(秒)
self._fast_dispense_time = 1.0 # 快速喷射时间(秒)
self.logger = logging.getLogger(f"VirtualTransferPump.{self.device_id}")
self.data = {}
# 添加调试信息
print(f"=== VirtualTransferPump {self.device_id} is being created! ===")
print(f"=== Config: {self.config} ===")
print(f"=== Kwargs: {kwargs} ===")
# 从config或kwargs中获取配置参数
self.port = self.config.get('port') or kwargs.get('port', 'VIRTUAL')
self._max_volume = self.config.get('max_volume') or kwargs.get('max_volume', 50.0)
self._transfer_rate = self.config.get('transfer_rate') or kwargs.get('transfer_rate', 5.0)
self._current_volume = 0.0
self.is_running = False
print(f"🚰 === 虚拟转移泵 {self.device_id} 已创建 === ✨")
print(f"💨 快速模式: {'启用' if self._fast_mode else '禁用'} | 移动时间: {self._fast_move_time}s | 喷射时间: {self._fast_dispense_time}s")
print(f"📊 最大容量: {self.max_volume}mL | 端口: {self.port}")
async def initialize(self) -> bool:
"""Initialize virtual transfer pump"""
print(f"=== VirtualTransferPump {self.device_id} initialize() called! ===")
self.logger.info(f"Initializing virtual transfer pump {self.device_id}")
self.data.update({
"status": "Idle",
"current_volume": 0.0,
"max_volume": self._max_volume,
"transfer_rate": self._transfer_rate,
"from_vessel": "",
"to_vessel": "",
"progress": 0.0,
"transferred_volume": 0.0,
"current_status": "Ready"
})
"""初始化虚拟泵 🚀"""
self.logger.info(f"🔧 初始化虚拟转移泵 {self.device_id} ")
self._status = "Idle"
self._position = 0.0
self._current_volume = 0.0
self.logger.info(f"✅ 转移泵 {self.device_id} 初始化完成 🚰")
return True
async def cleanup(self) -> bool:
"""Cleanup virtual transfer pump"""
self.logger.info(f"Cleaning up virtual transfer pump {self.device_id}")
"""清理虚拟泵 🧹"""
self.logger.info(f"🧹 清理虚拟转移泵 {self.device_id} 🔚")
self._status = "Idle"
self.logger.info(f"✅ 转移泵 {self.device_id} 清理完成 💤")
return True
async def transfer(self, from_vessel: str, to_vessel: str, volume: float,
amount: str = "", time: float = 0, viscous: bool = False,
rinsing_solvent: str = "", rinsing_volume: float = 0.0,
rinsing_repeats: int = 0, solid: bool = False) -> bool:
"""Execute liquid transfer - matches Transfer action"""
self.logger.info(f"Transfer: {volume}mL from {from_vessel} to {to_vessel}")
# 计算转移时间
if time > 0:
transfer_time = time
else:
# 如果是粘性液体,降低转移速率
rate = self._transfer_rate * 0.5 if viscous else self._transfer_rate
transfer_time = volume / rate
self.data.update({
"status": "Running",
"from_vessel": from_vessel,
"to_vessel": to_vessel,
"current_status": "Transferring",
"progress": 0.0,
"transferred_volume": 0.0
})
# 模拟转移过程
steps = 10
step_time = transfer_time / steps
step_volume = volume / steps
for i in range(steps):
await asyncio.sleep(step_time)
progress = (i + 1) / steps * 100
transferred = (i + 1) * step_volume
self.data.update({
"progress": progress,
"transferred_volume": transferred,
"current_status": f"Transferring {progress:.1f}%"
})
self.logger.info(f"Transfer progress: {progress:.1f}% ({transferred:.1f}/{volume}mL)")
# 如果需要冲洗
if rinsing_solvent and rinsing_volume > 0 and rinsing_repeats > 0:
self.data["current_status"] = "Rinsing"
for repeat in range(rinsing_repeats):
self.logger.info(f"Rinsing cycle {repeat + 1}/{rinsing_repeats} with {rinsing_solvent}")
await asyncio.sleep(1) # 模拟冲洗时间
self.data.update({
"status": "Idle",
"current_status": "Transfer completed",
"progress": 100.0,
"transferred_volume": volume
})
return True
# 添加所有在virtual_device.yaml中定义的状态属性
# 基本属性
@property
def status(self) -> str:
return self.data.get("status", "Unknown")
return self._status
@property
def position(self) -> float:
"""当前柱塞位置 (ml) 📍"""
return self._position
@property
def current_volume(self) -> float:
return self.data.get("current_volume", 0.0)
"""当前注射器中的体积 (ml) 💧"""
return self._current_volume
@property
def max_volume(self) -> float:
return self.data.get("max_volume", self._max_volume)
def max_velocity(self) -> float:
return self._max_velocity
@property
def transfer_rate(self) -> float:
return self.data.get("transfer_rate", self._transfer_rate)
return self._transfer_rate
def set_max_velocity(self, velocity: float):
"""设置最大速度 (ml/s) 🌊"""
self._max_velocity = max(0.1, min(50.0, velocity)) # 限制在合理范围内
self.logger.info(f"🌊 设置最大速度为 {self._max_velocity} mL/s")
@property
def from_vessel(self) -> str:
return self.data.get("from_vessel", "")
def get_status(self) -> str:
"""获取泵状态 📋"""
return self._status
@property
def to_vessel(self) -> str:
return self.data.get("to_vessel", "")
async def _simulate_operation(self, duration: float):
"""模拟操作延时 ⏱️"""
self._status = "Busy"
await asyncio.sleep(duration)
self._status = "Idle"
@property
def progress(self) -> float:
return self.data.get("progress", 0.0)
def _calculate_duration(self, volume: float, velocity: float = None) -> float:
"""
计算操作持续时间 ⏰
🚀 快速模式:保留计算逻辑用于日志显示,但实际使用固定的快速时间
"""
if velocity is None:
velocity = self._max_velocity
# 📊 计算理论时间(用于日志显示)
theoretical_duration = abs(volume) / velocity
# 🚀 如果启用快速模式,使用固定的快速时间
if self._fast_mode:
# 根据操作类型选择快速时间
if abs(volume) > 0.1: # 大于0.1mL的操作
actual_duration = self._fast_move_time
else: # 很小的操作
actual_duration = 0.5
self.logger.debug(f"⚡ 快速模式: 理论时间 {theoretical_duration:.2f}s → 实际时间 {actual_duration:.2f}s")
return actual_duration
else:
# 正常模式使用理论时间
return theoretical_duration
@property
def transferred_volume(self) -> float:
return self.data.get("transferred_volume", 0.0)
def _calculate_display_duration(self, volume: float, velocity: float = None) -> float:
"""
计算显示用的持续时间(用于日志) 📊
这个函数返回理论计算时间,用于日志显示
"""
if velocity is None:
velocity = self._max_velocity
return abs(volume) / velocity
@property
def current_status(self) -> str:
return self.data.get("current_status", "Ready")
# 新的set_position方法 - 专门用于SetPumpPosition动作
async def set_position(self, position: float, max_velocity: float = None):
"""
移动到绝对位置 - 专门用于SetPumpPosition动作 🎯
Args:
position (float): 目标位置 (ml)
max_velocity (float): 移动速度 (ml/s)
Returns:
dict: 符合SetPumpPosition.action定义的结果
"""
try:
# 验证并转换参数
target_position = float(position)
velocity = float(max_velocity) if max_velocity is not None else self._max_velocity
# 限制位置在有效范围内
target_position = max(0.0, min(float(self.max_volume), target_position))
# 计算移动距离
volume_to_move = abs(target_position - self._position)
# 📊 计算显示用的时间(用于日志)
display_duration = self._calculate_display_duration(volume_to_move, velocity)
# ⚡ 计算实际执行时间(快速模式)
actual_duration = self._calculate_duration(volume_to_move, velocity)
# 🎯 确定操作类型和emoji
if target_position > self._position:
operation_type = "吸液"
operation_emoji = "📥"
elif target_position < self._position:
operation_type = "排液"
operation_emoji = "📤"
else:
operation_type = "保持"
operation_emoji = "📍"
self.logger.info(f"🎯 SET_POSITION: {operation_type} {operation_emoji}")
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {target_position:.2f}mL (移动 {volume_to_move:.2f}mL)")
self.logger.info(f" 🌊 速度: {velocity:.2f} mL/s")
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
if self._fast_mode:
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
# 🚀 模拟移动过程
if volume_to_move > 0.01: # 只有当移动距离足够大时才显示进度
start_position = self._position
steps = 5 if actual_duration > 0.5 else 2 # 根据实际时间调整步数
step_duration = actual_duration / steps
self.logger.info(f"🚀 开始{operation_type}... {operation_emoji}")
for i in range(steps + 1):
# 计算当前位置和进度
progress = (i / steps) * 100 if steps > 0 else 100
current_pos = start_position + (target_position - start_position) * (i / steps) if steps > 0 else target_position
# 更新状态
if i < steps:
self._status = f"{operation_type}"
status_emoji = "🔄"
else:
self._status = "Idle"
status_emoji = ""
self._position = current_pos
self._current_volume = current_pos
# 显示进度每25%或最后一步)
if i == 0:
self.logger.debug(f" 🔄 {operation_type}开始: {progress:.0f}%")
elif progress >= 50 and i == steps // 2:
self.logger.debug(f" 🔄 {operation_type}进度: {progress:.0f}%")
elif i == steps:
self.logger.info(f"{operation_type}完成: {progress:.0f}% | 当前位置: {current_pos:.2f}mL")
# 等待一小步时间
if i < steps and step_duration > 0:
await asyncio.sleep(step_duration)
else:
# 移动距离很小,直接完成
self._position = target_position
self._current_volume = target_position
self.logger.info(f" 📍 微调完成: {target_position:.2f}mL")
# 确保最终位置准确
self._position = target_position
self._current_volume = target_position
self._status = "Idle"
# 📊 最终状态日志
if volume_to_move > 0.01:
self.logger.info(f"🎉 SET_POSITION 完成! 📍 最终位置: {self._position:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
# 返回符合action定义的结果
return {
"success": True,
"message": f"✅ 成功移动到位置 {self._position:.2f}mL ({operation_type})",
"final_position": self._position,
"final_volume": self._current_volume,
"operation_type": operation_type
}
except Exception as e:
error_msg = f"❌ 设置位置失败: {str(e)}"
self.logger.error(error_msg)
return {
"success": False,
"message": error_msg,
"final_position": self._position,
"final_volume": self._current_volume
}
# 其他泵操作方法
async def pull_plunger(self, volume: float, velocity: float = None):
"""
拉取柱塞(吸液) 📥
Args:
volume (float): 要拉取的体积 (ml)
velocity (float): 拉取速度 (ml/s)
"""
new_position = min(self.max_volume, self._position + volume)
actual_volume = new_position - self._position
if actual_volume <= 0:
self.logger.warning("⚠️ 无法吸液 - 已达到最大容量")
return
display_duration = self._calculate_display_duration(actual_volume, velocity)
actual_duration = self._calculate_duration(actual_volume, velocity)
self.logger.info(f"📥 开始吸液: {actual_volume:.2f}mL")
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {new_position:.2f}mL")
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
if self._fast_mode:
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
await self._simulate_operation(actual_duration)
self._position = new_position
self._current_volume = new_position
self.logger.info(f"✅ 吸液完成: {actual_volume:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
async def push_plunger(self, volume: float, velocity: float = None):
"""
推出柱塞(排液) 📤
Args:
volume (float): 要推出的体积 (ml)
velocity (float): 推出速度 (ml/s)
"""
new_position = max(0, self._position - volume)
actual_volume = self._position - new_position
if actual_volume <= 0:
self.logger.warning("⚠️ 无法排液 - 已达到最小容量")
return
display_duration = self._calculate_display_duration(actual_volume, velocity)
actual_duration = self._calculate_duration(actual_volume, velocity)
self.logger.info(f"📤 开始排液: {actual_volume:.2f}mL")
self.logger.info(f" 📍 位置: {self._position:.2f}mL → {new_position:.2f}mL")
self.logger.info(f" ⏰ 预计时间: {display_duration:.2f}s")
if self._fast_mode:
self.logger.info(f" ⚡ 快速模式: 实际用时 {actual_duration:.2f}s")
await self._simulate_operation(actual_duration)
self._position = new_position
self._current_volume = new_position
self.logger.info(f"✅ 排液完成: {actual_volume:.2f}mL | 💧 当前体积: {self._current_volume:.2f}mL")
# 便捷操作方法
async def aspirate(self, volume: float, velocity: float = None):
"""吸液操作 📥"""
await self.pull_plunger(volume, velocity)
async def dispense(self, volume: float, velocity: float = None):
"""排液操作 📤"""
await self.push_plunger(volume, velocity)
async def transfer(self, volume: float, aspirate_velocity: float = None, dispense_velocity: float = None):
"""转移操作(先吸后排) 🔄"""
self.logger.info(f"🔄 开始转移操作: {volume:.2f}mL")
# 吸液
await self.aspirate(volume, aspirate_velocity)
# 短暂停顿
self.logger.debug("⏸️ 短暂停顿...")
await asyncio.sleep(0.1)
# 排液
await self.dispense(volume, dispense_velocity)
async def empty_syringe(self, velocity: float = None):
"""清空注射器"""
await self.set_position(0, velocity)
async def fill_syringe(self, velocity: float = None):
"""充满注射器"""
await self.set_position(self.max_volume, velocity)
async def stop_operation(self):
"""停止当前操作"""
self._status = "Idle"
self.logger.info("Operation stopped")
# 状态查询方法
def get_position(self) -> float:
"""获取当前位置"""
return self._position
def get_current_volume(self) -> float:
"""获取当前体积"""
return self._current_volume
def get_remaining_capacity(self) -> float:
"""获取剩余容量"""
return self.max_volume - self._current_volume
def is_empty(self) -> bool:
"""检查是否为空"""
return self._current_volume <= 0.01 # 允许小量误差
def is_full(self) -> bool:
"""检查是否已满"""
return self._current_volume >= (self.max_volume - 0.01) # 允许小量误差
# 调试和状态信息
def get_pump_info(self) -> dict:
"""获取泵的详细信息"""
return {
"device_id": self.device_id,
"status": self._status,
"position": self._position,
"current_volume": self._current_volume,
"max_volume": self.max_volume,
"max_velocity": self._max_velocity,
"mode": self.mode.name,
"is_empty": self.is_empty(),
"is_full": self.is_full(),
"remaining_capacity": self.get_remaining_capacity()
}
def __str__(self):
return f"VirtualTransferPump({self.device_id}: {self._current_volume:.2f}/{self.max_volume} ml, {self._status})"
def __repr__(self):
return self.__str__()
# 使用示例
async def demo():
"""虚拟泵使用示例"""
pump = VirtualTransferPump("demo_pump", {"max_volume": 50.0})
await pump.initialize()
print(f"Initial state: {pump}")
# 测试set_position方法
result = await pump.set_position(10.0, max_velocity=2.0)
print(f"Set position result: {result}")
print(f"After setting position to 10ml: {pump}")
# 吸液测试
await pump.aspirate(5.0, velocity=2.0)
print(f"After aspirating 5ml: {pump}")
# 清空测试
result = await pump.set_position(0.0)
print(f"Empty result: {result}")
print(f"After emptying: {pump}")
print("\nPump info:", pump.get_pump_info())
if __name__ == "__main__":
asyncio.run(demo())

View File

@@ -0,0 +1,47 @@
import asyncio
import time
from typing import Dict, Any, Optional
class VirtualVacuumPump:
"""Virtual vacuum pump for testing"""
def __init__(self, device_id: Optional[str] = None, config: Optional[Dict[str, Any]] = None, **kwargs):
self.device_id = device_id or "unknown_vacuum_pump"
self.config = config or {}
self.data = {}
self._status = "OPEN"
async def initialize(self) -> bool:
"""Initialize virtual vacuum pump"""
self.data.update({
"status": self._status
})
return True
async def cleanup(self) -> bool:
"""Cleanup virtual vacuum pump"""
return True
@property
def status(self) -> str:
return self._status
def get_status(self) -> str:
return self._status
def set_status(self, string):
self._status = string
time.sleep(5)
def open(self):
self._status = "OPEN"
def close(self):
self._status = "CLOSED"
def is_open(self):
return self._status
def is_closed(self):
return not self._status

View File

@@ -1,11 +1,9 @@
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import socket
import json
import base64
import argparse
import sys
import json
import socket
import time
@@ -96,17 +94,20 @@ class ZhidaClient:
def abort(self) -> dict:
return self._send_command({"command": "abort"})
"""
a,b,c
1,2,4
2,4,5
"""
client = ZhidaClient()
# 连接
client.connect()
# 获取状态
print(client.status)
if __name__ == "__main__":
"""
a,b,c
1,2,4
2,4,5
"""
client = ZhidaClient()
# 连接
client.connect()
# 获取状态
print(client.status)
# 命令格式python zhida.py <subcommand> [options]
# 命令格式python zhida.py <subcommand> [options]

View File

@@ -10,18 +10,88 @@ class Point3D(BaseModel):
# Start Protocols
class PumpTransferProtocol(BaseModel):
# === 核心参数(保持必需) ===
from_vessel: str
to_vessel: str
volume: float
# === 所有其他参数都改为可选,添加默认值 ===
volume: float = 0.0 # 🔧 改为-1表示转移全部体积
amount: str = ""
time: float = 0
time: float = 0.0
viscous: bool = False
rinsing_solvent: str = "air"
rinsing_volume: float = 5000
rinsing_repeats: int = 2
rinsing_solvent: str = ""
rinsing_volume: float = 0.0
rinsing_repeats: int = 0
solid: bool = False
flowrate: float = 500
transfer_flowrate: float = 2500
flowrate: float = 2.5
transfer_flowrate: float = 0.5
# === 新版XDL兼容参数可选 ===
rate_spec: str = ""
event: str = ""
through: str = ""
def model_post_init(self, __context):
"""后处理:智能参数处理和兼容性调整"""
# 如果指定了 amount 但volume是默认值尝试解析 amount
if self.amount and self.volume == 0.0:
parsed_volume = self._parse_amount_to_volume(self.amount)
if parsed_volume > 0:
self.volume = parsed_volume
# 如果指定了 time 但没有明确设置流速,根据时间计算流速
if self.time > 0 and self.volume > 0:
if self.flowrate == 2.5 and self.transfer_flowrate == 0.5:
calculated_flowrate = self.volume / self.time
self.flowrate = min(calculated_flowrate, 10.0)
self.transfer_flowrate = min(calculated_flowrate, 5.0)
# 🔧 核心修复如果flowrate为0ROS2传入使用默认值
if self.flowrate <= 0:
self.flowrate = 2.5
if self.transfer_flowrate <= 0:
self.transfer_flowrate = 0.5
# 根据 rate_spec 调整流速
if self.rate_spec == "dropwise":
self.flowrate = min(self.flowrate, 0.1)
self.transfer_flowrate = min(self.transfer_flowrate, 0.1)
elif self.rate_spec == "slowly":
self.flowrate = min(self.flowrate, 0.5)
self.transfer_flowrate = min(self.transfer_flowrate, 0.3)
elif self.rate_spec == "quickly":
self.flowrate = max(self.flowrate, 5.0)
self.transfer_flowrate = max(self.transfer_flowrate, 2.0)
def _parse_amount_to_volume(self, amount: str) -> float:
"""解析 amount 字符串为体积"""
if not amount:
return 0.0
amount = amount.lower().strip()
# 处理特殊关键词
if amount == "all":
return 0.0 # 🔧 "all"也表示转移全部
# 提取数字
import re
numbers = re.findall(r'[\d.]+', amount)
if numbers:
volume = float(numbers[0])
# 单位转换
if 'ml' in amount or 'milliliter' in amount:
return volume
elif 'l' in amount and 'ml' not in amount:
return volume * 1000
elif 'μl' in amount or 'microliter' in amount:
return volume / 1000
else:
return volume
return 0.0
class CleanProtocol(BaseModel):
@@ -33,33 +103,112 @@ class CleanProtocol(BaseModel):
class SeparateProtocol(BaseModel):
purpose: str # 'wash' or 'extract'. 'wash' means that product phase will not be the added solvent phase, 'extract' means product phase will be the added solvent phase. If no solvent is added just use 'extract'.
product_phase: str # 'top' or 'bottom'. Phase that product will be in.
from_vessel: str #Contents of from_vessel are transferred to separation_vessel and separation is performed.
separation_vessel: str # Vessel in which separation of phases will be carried out.
to_vessel: str # Vessel to send product phase to.
waste_phase_to_vessel: str # Optional. Vessel to send waste phase to.
solvent: str # Optional. Solvent to add to separation vessel after contents of from_vessel has been transferred to create two phases.
solvent_volume: float # Optional. Volume of solvent to add.
through: str # Optional. Solid chemical to send product phase through on way to to_vessel, e.g. 'celite'.
repeats: int # Optional. Number of separations to perform.
stir_time: float # Optional. Time stir for after adding solvent, before separation of phases.
stir_speed: float # Optional. Speed to stir at after adding solvent, before separation of phases.
settling_time: float # Optional. Time
purpose: str
product_phase: str
from_vessel: str
separation_vessel: str
to_vessel: str
waste_phase_to_vessel: str
solvent: str
solvent_volume: float
through: str
repeats: int
stir_time: float
stir_speed: float
settling_time: float
class EvaporateProtocol(BaseModel):
vessel: str
pressure: float
temp: float
time: float
stir_speed: float
# === 核心参数(必需) ===
vessel: str = Field(..., description="蒸发容器名称")
# === 所有其他参数都改为可选,添加默认值 ===
pressure: float = Field(0.1, description="真空度 (bar)默认0.1 bar")
temp: float = Field(60.0, description="加热温度 (°C)默认60°C")
time: float = Field(180.0, description="蒸发时间 (秒)默认1800s (30分钟)")
stir_speed: float = Field(100.0, description="旋转速度 (RPM)默认100 RPM")
# === 新版XDL兼容参数可选 ===
solvent: str = Field("", description="溶剂名称(用于识别蒸发的溶剂类型)")
def model_post_init(self, __context):
"""后处理:智能参数处理和兼容性调整"""
# 参数范围验证和修正
if self.pressure <= 0 or self.pressure > 1.0:
logger.warning(f"真空度 {self.pressure} bar 超出范围,修正为 0.1 bar")
self.pressure = 0.1
if self.temp < 10.0 or self.temp > 200.0:
logger.warning(f"温度 {self.temp}°C 超出范围,修正为 60°C")
self.temp = 60.0
if self.time <= 0:
logger.warning(f"时间 {self.time}s 无效,修正为 1800s")
self.time = 1800.0
if self.stir_speed < 10.0 or self.stir_speed > 300.0:
logger.warning(f"旋转速度 {self.stir_speed} RPM 超出范围,修正为 100 RPM")
self.stir_speed = 100.0
# 根据溶剂类型调整参数
if self.solvent:
self._adjust_parameters_by_solvent()
def _adjust_parameters_by_solvent(self):
"""根据溶剂类型调整蒸发参数"""
solvent_lower = self.solvent.lower()
# 水系溶剂:较高温度,较低真空度
if any(s in solvent_lower for s in ['water', 'aqueous', 'h2o']):
if self.temp == 60.0: # 如果是默认值,则调整
self.temp = 80.0
if self.pressure == 0.1:
self.pressure = 0.2
# 有机溶剂:根据沸点调整
elif any(s in solvent_lower for s in ['ethanol', 'methanol', 'acetone']):
if self.temp == 60.0:
self.temp = 50.0
if self.pressure == 0.1:
self.pressure = 0.05
# 高沸点溶剂:更高温度
elif any(s in solvent_lower for s in ['dmso', 'dmi', 'toluene']):
if self.temp == 60.0:
self.temp = 100.0
if self.pressure == 0.1:
self.pressure = 0.01
class EvacuateAndRefillProtocol(BaseModel):
vessel: str
gas: str
repeats: int
# === 必需参数 ===
vessel: str = Field(..., description="目标容器名称")
gas: str = Field(..., description="气体名称")
# 🔧 删除 repeats 参数,直接在代码中硬编码为 3 次
def model_post_init(self, __context):
"""后处理:参数验证和兼容性调整"""
# 验证气体名称
if not self.gas.strip():
logger.warning("气体名称为空,使用默认值 'nitrogen'")
self.gas = "nitrogen"
# 标准化气体名称
gas_aliases = {
'n2': 'nitrogen',
'ar': 'argon',
'air': 'air',
'o2': 'oxygen',
'co2': 'carbon_dioxide',
'h2': 'hydrogen'
}
gas_lower = self.gas.lower().strip()
if gas_lower in gas_aliases:
self.gas = gas_aliases[gas_lower]
class AGVTransferProtocol(BaseModel):
@@ -67,6 +216,7 @@ class AGVTransferProtocol(BaseModel):
to_repo: dict
from_repo_position: str
to_repo_position: str
#=============新添加的新的协议================
class AddProtocol(BaseModel):
vessel: str
@@ -84,45 +234,285 @@ class CentrifugeProtocol(BaseModel):
vessel: str
speed: float
time: float
temp: float # 移除默认值
temp: float
class FilterProtocol(BaseModel):
vessel: str
filtrate_vessel: str # 移除默认值
stir: bool # 移除默认值
stir_speed: float # 移除默认值
temp: float # 移除默认值
continue_heatchill: bool # 移除默认值
volume: float # 移除默认值
# === 必需参数 ===
vessel: str = Field(..., description="过滤容器名称")
# === 可选参数 ===
filtrate_vessel: str = Field("", description="滤液容器名称(可选,自动查找)")
def model_post_init(self, __context):
"""后处理:参数验证"""
# 验证容器名称
if not self.vessel.strip():
raise ValueError("vessel 参数不能为空")
class HeatChillProtocol(BaseModel):
vessel: str
temp: float
time: float
stir: bool
stir_speed: float
purpose: str
# === 必需参数 ===
vessel: str = Field(..., description="加热容器名称")
# === 可选参数 - 温度相关 ===
temp: float = Field(25.0, description="目标温度 (°C)")
temp_spec: str = Field("", description="温度规格(如 'room temperature', 'reflux'")
# === 可选参数 - 时间相关 ===
time: float = Field(300.0, description="加热时间 (秒)")
time_spec: str = Field("", description="时间规格(如 'overnight', '2 h'")
# === 可选参数 - 其他XDL参数 ===
pressure: str = Field("", description="压力规格(如 '1 mbar'),不做特殊处理")
reflux_solvent: str = Field("", description="回流溶剂名称,不做特殊处理")
# === 可选参数 - 搅拌相关 ===
stir: bool = Field(False, description="是否搅拌")
stir_speed: float = Field(300.0, description="搅拌速度 (RPM)")
purpose: str = Field("", description="操作目的")
def model_post_init(self, __context):
"""后处理:参数验证和解析"""
# 验证必需参数
if not self.vessel.strip():
raise ValueError("vessel 参数不能为空")
# 温度解析:优先使用 temp_spec然后是 temp
if self.temp_spec:
self.temp = self._parse_temp_spec(self.temp_spec)
# 时间解析:优先使用 time_spec然后是 time
if self.time_spec:
self.time = self._parse_time_spec(self.time_spec)
# 参数范围验证
if self.temp < -50.0 or self.temp > 300.0:
logger.warning(f"温度 {self.temp}°C 超出范围,修正为 25°C")
self.temp = 25.0
if self.time < 0:
logger.warning(f"时间 {self.time}s 无效,修正为 300s")
self.time = 300.0
if self.stir_speed < 0 or self.stir_speed > 1500.0:
logger.warning(f"搅拌速度 {self.stir_speed} RPM 超出范围,修正为 300 RPM")
self.stir_speed = 300.0
def _parse_temp_spec(self, temp_spec: str) -> float:
"""解析温度规格为具体温度"""
temp_spec = temp_spec.strip().lower()
# 特殊温度规格
special_temps = {
"room temperature": 25.0, # 室温
"reflux": 78.0, # 默认回流温度(乙醇沸点)
"ice bath": 0.0, # 冰浴
"boiling": 100.0, # 沸腾
"hot": 60.0, # 热
"warm": 40.0, # 温热
"cold": 10.0, # 冷
}
if temp_spec in special_temps:
return special_temps[temp_spec]
# 解析带单位的温度(如 "256 °C"
import re
temp_pattern = r'(\d+(?:\.\d+)?)\s*°?[cf]?'
match = re.search(temp_pattern, temp_spec)
if match:
return float(match.group(1))
return 25.0 # 默认室温
def _parse_time_spec(self, time_spec: str) -> float:
"""解析时间规格为秒数"""
time_spec = time_spec.strip().lower()
# 特殊时间规格
special_times = {
"overnight": 43200.0, # 12小时
"several hours": 10800.0, # 3小时
"few hours": 7200.0, # 2小时
"long time": 3600.0, # 1小时
"short time": 300.0, # 5分钟
}
if time_spec in special_times:
return special_times[time_spec]
# 解析带单位的时间(如 "2 h"
import re
time_pattern = r'(\d+(?:\.\d+)?)\s*([a-zA-Z]+)'
match = re.search(time_pattern, time_spec)
if match:
value = float(match.group(1))
unit = match.group(2).lower()
unit_multipliers = {
's': 1.0,
'sec': 1.0,
'second': 1.0,
'seconds': 1.0,
'min': 60.0,
'minute': 60.0,
'minutes': 60.0,
'h': 3600.0,
'hr': 3600.0,
'hour': 3600.0,
'hours': 3600.0,
}
multiplier = unit_multipliers.get(unit, 3600.0) # 默认按小时计算
return value * multiplier
return 300.0 # 默认5分钟
class HeatChillStartProtocol(BaseModel):
vessel: str
temp: float
purpose: str
# === 必需参数 ===
vessel: str = Field(..., description="加热容器名称")
# === 可选参数 - 温度相关 ===
temp: float = Field(25.0, description="目标温度 (°C)")
temp_spec: str = Field("", description="温度规格(如 'room temperature', 'reflux'")
# === 可选参数 - 其他XDL参数 ===
pressure: str = Field("", description="压力规格(如 '1 mbar'),不做特殊处理")
reflux_solvent: str = Field("", description="回流溶剂名称,不做特殊处理")
# === 可选参数 - 搅拌相关 ===
stir: bool = Field(False, description="是否搅拌")
stir_speed: float = Field(300.0, description="搅拌速度 (RPM)")
purpose: str = Field("", description="操作目的")
class HeatChillStopProtocol(BaseModel):
vessel: str
# === 必需参数 ===
vessel: str = Field(..., description="加热容器名称")
class StirProtocol(BaseModel):
stir_time: float
stir_speed: float
settling_time: float
# === 必需参数 ===
vessel: str = Field(..., description="搅拌容器名称")
# === 可选参数 ===
time: str = Field("5 min", description="搅拌时间(如 '0.5 h', '30 min'")
event: str = Field("", description="事件标识(如 'A', 'B'")
time_spec: str = Field("", description="时间规格(如 'several minutes', 'overnight'")
def model_post_init(self, __context):
"""后处理:参数验证和时间解析"""
# 验证必需参数
if not self.vessel.strip():
raise ValueError("vessel 参数不能为空")
# 优先使用 time_spec然后是 time
if self.time_spec:
self.time = self.time_spec
# 时间解析和验证
if self.time:
try:
# 解析时间字符串为秒数
parsed_time = self._parse_time_string(self.time)
if parsed_time <= 0:
logger.warning(f"时间 '{self.time}' 解析结果无效,使用默认值 300s")
self.time = "5 min"
except Exception as e:
logger.warning(f"时间 '{self.time}' 解析失败: {e},使用默认值 300s")
self.time = "5 min"
def _parse_time_string(self, time_str: str) -> float:
"""解析时间字符串为秒数"""
import re
time_str = time_str.strip().lower()
# 特殊时间规格
special_times = {
"several minutes": 300.0, # 5分钟
"few minutes": 180.0, # 3分钟
"overnight": 43200.0, # 12小时
"room temperature": 300.0, # 默认5分钟
}
if time_str in special_times:
return special_times[time_str]
# 正则表达式匹配数字和单位
pattern = r'(\d+\.?\d*)\s*([a-zA-Z]+)'
match = re.match(pattern, time_str)
if not match:
return 300.0 # 默认5分钟
value = float(match.group(1))
unit = match.group(2).lower()
# 时间单位转换
unit_multipliers = {
's': 1.0,
'sec': 1.0,
'second': 1.0,
'seconds': 1.0,
'min': 60.0,
'minute': 60.0,
'minutes': 60.0,
'h': 3600.0,
'hr': 3600.0,
'hour': 3600.0,
'hours': 3600.0,
'd': 86400.0,
'day': 86400.0,
'days': 86400.0,
}
multiplier = unit_multipliers.get(unit, 60.0) # 默认按分钟计算
return value * multiplier
def get_time_in_seconds(self) -> float:
"""获取时间(秒)"""
return self._parse_time_string(self.time)
class StartStirProtocol(BaseModel):
vessel: str
stir_speed: float
purpose: str
# === 必需参数 ===
vessel: str = Field(..., description="搅拌容器名称")
# === 可选参数,添加默认值 ===
stir_speed: float = Field(200.0, description="搅拌速度 (RPM)默认200 RPM")
purpose: str = Field("", description="搅拌目的(可选)")
def model_post_init(self, __context):
"""后处理:参数验证和修正"""
# 验证必需参数
if not self.vessel.strip():
raise ValueError("vessel 参数不能为空")
# 修正参数范围
if self.stir_speed < 10.0:
logger.warning(f"搅拌速度 {self.stir_speed} RPM 过低,修正为 100 RPM")
self.stir_speed = 100.0
elif self.stir_speed > 1500.0:
logger.warning(f"搅拌速度 {self.stir_speed} RPM 过高,修正为 1000 RPM")
self.stir_speed = 1000.0
class StopStirProtocol(BaseModel):
vessel: str
# === 必需参数 ===
vessel: str = Field(..., description="搅拌容器名称")
def model_post_init(self, __context):
"""后处理:参数验证"""
# 验证必需参数
if not self.vessel.strip():
raise ValueError("vessel 参数不能为空")
class TransferProtocol(BaseModel):
from_vessel: str
@@ -137,45 +527,117 @@ class TransferProtocol(BaseModel):
solid: bool = False
class CleanVesselProtocol(BaseModel):
vessel: str # 要清洗的容器名称
solvent: str # 用于清洗容器的溶剂名称
volume: float # 清洗溶剂的体积,可选参数
temp: float # 清洗时的温度,可选参数
repeats: int = 1 # 清洗操作的重复次数,默认为 1
vessel: str
solvent: str
volume: float
temp: float
repeats: int = 1
class DissolveProtocol(BaseModel):
vessel: str # 装有要溶解物质的容器名称
solvent: str # 用于溶解物质的溶剂名称
volume: float # 溶剂的体积,可选参数
amount: str = "" # 要溶解物质的量,可选参数
temp: float = 25.0 # 溶解时的温度,可选参数
time: float = 0.0 # 溶解的时间,可选参数
stir_speed: float = 0.0 # 搅拌速度,可选参数
vessel: str
solvent: str
volume: float
amount: str = ""
temp: float = 25.0
time: float = 0.0
stir_speed: float = 0.0
class FilterThroughProtocol(BaseModel):
from_vessel: str # 源容器的名称,即物质起始所在的容器
to_vessel: str # 目标容器的名称,物质过滤后要到达的容器
filter_through: str # 过滤时所通过的介质,如滤纸、柱子等
eluting_solvent: str = "" # 洗脱溶剂的名称,可选参数
eluting_volume: float = 0.0 # 洗脱溶剂的体积,可选参数
eluting_repeats: int = 0 # 洗脱操作的重复次数,默认为 0
residence_time: float = 0.0 # 物质在过滤介质中的停留时间,可选参数
from_vessel: str
to_vessel: str
filter_through: str
eluting_solvent: str = ""
eluting_volume: float = 0.0
eluting_repeats: int = 0
residence_time: float = 0.0
class RunColumnProtocol(BaseModel):
from_vessel: str # 源容器的名称,即样品起始所在的容器
to_vessel: str # 目标容器的名称,分离后的样品要到达的容器
column: str # 所使用的柱子的名称
from_vessel: str
to_vessel: str
column: str
class WashSolidProtocol(BaseModel):
vessel: str # 装有固体物质的容器名称
solvent: str # 用于清洗固体的溶剂名称
volume: float # 清洗溶剂的体积
filtrate_vessel: str = "" # 滤液要收集到的容器名称,可选参数
temp: float = 25.0 # 清洗时的温度,可选参数
stir: bool = False # 是否在清洗过程中搅拌,默认为 False
stir_speed: float = 0.0 # 搅拌速度,可选参数
time: float = 0.0 # 清洗的时间,可选参数
repeats: int = 1 # 清洗操作的重复次数,默认为 1
# === 必需参数 ===
vessel: str = Field(..., description="装有固体的容器名称")
solvent: str = Field(..., description="清洗溶剂名称")
volume: float = Field(..., description="清洗溶剂体积 (mL)")
# === 可选参数,添加默认值 ===
filtrate_vessel: str = Field("", description="滤液收集容器(可选,自动查找)")
temp: float = Field(25.0, description="清洗温度 (°C)默认25°C")
stir: bool = Field(False, description="是否搅拌默认False")
stir_speed: float = Field(0.0, description="搅拌速度 (RPM)默认0")
time: float = Field(0.0, description="清洗时间 (秒)默认0")
repeats: int = Field(1, description="重复次数默认1")
def model_post_init(self, __context):
"""后处理:参数验证和修正"""
# 验证必需参数
if not self.vessel.strip():
raise ValueError("vessel 参数不能为空")
if not self.solvent.strip():
raise ValueError("solvent 参数不能为空")
if self.volume <= 0:
raise ValueError("volume 必须大于0")
# 修正参数范围
if self.temp < 0 or self.temp > 200:
logger.warning(f"温度 {self.temp}°C 超出范围,修正为 25°C")
self.temp = 25.0
if self.stir_speed < 0 or self.stir_speed > 500:
logger.warning(f"搅拌速度 {self.stir_speed} RPM 超出范围,修正为 0")
self.stir_speed = 0.0
if self.time < 0:
logger.warning(f"时间 {self.time}s 无效,修正为 0")
self.time = 0.0
if self.repeats < 1:
logger.warning(f"重复次数 {self.repeats} 无效,修正为 1")
self.repeats = 1
elif self.repeats > 10:
logger.warning(f"重复次数 {self.repeats} 过多,修正为 10")
self.repeats = 10
class AdjustPHProtocol(BaseModel):
vessel: str = Field(..., description="目标容器")
ph_value: float = Field(..., description="目标pH值") # 改为 ph_value
reagent: str = Field(..., description="酸碱试剂名称")
# 移除其他可选参数,使用默认值
__all__ = ["Point3D", "PumpTransferProtocol", "CleanProtocol", "SeparateProtocol", "EvaporateProtocol", "EvacuateAndRefillProtocol", "AGVTransferProtocol", "CentrifugeProtocol", "AddProtocol", "FilterProtocol", "HeatChillProtocol", "HeatChillStartProtocol", "HeatChillStopProtocol", "StirProtocol", "StartStirProtocol", "StopStirProtocol", "TransferProtocol", "CleanVesselProtocol", "DissolveProtocol", "FilterThroughProtocol", "RunColumnProtocol", "WashSolidProtocol"]
class ResetHandlingProtocol(BaseModel):
solvent: str = Field(..., description="溶剂名称")
class DryProtocol(BaseModel):
compound: str = Field(..., description="化合物名称")
vessel: str = Field(..., description="目标容器")
class RecrystallizeProtocol(BaseModel):
ratio: str = Field(..., description="溶剂比例(如 '1:1', '3:7'")
solvent1: str = Field(..., description="第一种溶剂名称")
solvent2: str = Field(..., description="第二种溶剂名称")
vessel: str = Field(..., description="目标容器")
volume: float = Field(..., description="总体积 (mL)")
class HydrogenateProtocol(BaseModel):
temp: str = Field(..., description="反应温度(如 '45 °C'")
time: str = Field(..., description="反应时间(如 '2 h'")
vessel: str = Field(..., description="反应容器")
__all__ = [
"Point3D", "PumpTransferProtocol", "CleanProtocol", "SeparateProtocol",
"EvaporateProtocol", "EvacuateAndRefillProtocol", "AGVTransferProtocol",
"CentrifugeProtocol", "AddProtocol", "FilterProtocol",
"HeatChillProtocol",
"HeatChillStartProtocol", "HeatChillStopProtocol",
"StirProtocol", "StartStirProtocol", "StopStirProtocol",
"TransferProtocol", "CleanVesselProtocol", "DissolveProtocol",
"FilterThroughProtocol", "RunColumnProtocol", "WashSolidProtocol",
"AdjustPHProtocol", "ResetHandlingProtocol", "DryProtocol",
"RecrystallizeProtocol", "HydrogenateProtocol"
]
# End Protocols

View File

@@ -1,10 +1,10 @@
io_snrd:
description: IO Board with 16 IOs
class:
module: ilabos.device_comms.SRND_16_IO:SRND_16_IO
type: python
hardware_interface:
name: modbus_client
extra_info: []
read: read_io_coil
write: write_io_coil
#io_snrd:
# description: IO Board with 16 IOs
# class:
# module: unilabos.device_comms.SRND_16_IO:SRND_16_IO
# type: python
# hardware_interface:
# name: modbus_client
# extra_info: []
# read: read_io_coil
# write: write_io_coil

View File

@@ -1,7 +1,103 @@
serial:
description: Serial communication interface, used when sharing same serial port for multiple devices
class:
action_value_mappings:
auto-handle_serial_request:
feedback: {}
goal: {}
goal_default:
request: null
response: null
handles: []
result: {}
schema:
description: handle_serial_request的参数schema
properties:
feedback: {}
goal:
properties:
request:
type: string
response:
type: string
required:
- request
- response
type: object
result: {}
required:
- goal
title: handle_serial_request参数
type: object
type: UniLabJsonCommand
auto-read_data:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: read_data的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: read_data参数
type: object
type: UniLabJsonCommand
auto-send_command:
feedback: {}
goal: {}
goal_default:
command: null
handles: []
result: {}
schema:
description: send_command的参数schema
properties:
feedback: {}
goal:
properties:
command:
type: string
required:
- command
type: object
result: {}
required:
- goal
title: send_command参数
type: object
type: UniLabJsonCommand
module: unilabos.ros.nodes.presets.serial_node:ROS2SerialNode
status_types: {}
type: ros2
schema:
properties: {}
description: Serial communication interface, used when sharing same serial port
for multiple devices
handles: []
icon: ''
init_param_schema:
config:
properties:
baudrate:
default: 9600
type: integer
device_id:
type: string
port:
type: string
resource_tracker:
type: string
required:
- device_id
- port
type: object
data:
properties: {}
required: []
type: object
version: 0.0.1

View File

@@ -0,0 +1,70 @@
camera:
class:
action_value_mappings:
auto-destroy_node:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: 用于安全地关闭摄像头设备释放摄像头资源停止视频采集和发布服务。调用此函数将清理OpenCV摄像头连接并销毁ROS2节点。
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: destroy_node参数
type: object
type: UniLabJsonCommand
auto-timer_callback:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: 定时器回调函数的参数schema。此函数负责定期采集摄像头视频帧将OpenCV格式的图像转换为ROS Image消息格式并发布到指定的视频话题。默认以10Hz频率执行确保视频流的连续性和实时性。
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: timer_callback参数
type: object
type: UniLabJsonCommand
module: unilabos.ros.nodes.presets.camera:VideoPublisher
status_types: {}
type: ros2
description: VideoPublisher摄像头设备节点用于实时视频采集和流媒体发布。该设备通过OpenCV连接本地摄像头如USB摄像头、内置摄像头等定时采集视频帧并将其转换为ROS2的sensor_msgs/Image消息格式发布到视频话题。主要用于实验室自动化系统中的视觉监控、图像分析、实时观察等应用场景。支持可配置的摄像头索引、发布频率等参数。
handles: []
icon: ''
init_param_schema:
config:
properties:
camera_index:
default: 0
type: string
device_id:
default: video_publisher
type: string
period:
default: 0.1
type: number
resource_tracker:
type: string
required: []
type: object
data:
properties: {}
required: []
type: object
version: 0.0.1

View File

@@ -1,67 +1,405 @@
# 光学表征设备:红外、紫外可见、拉曼等
raman_home_made:
description: Raman spectroscopy device
class:
module: unilabos.devices.raman_uv.home_made_raman:RamanObj
type: python
status_types:
status: String
action_value_mappings:
raman_cmd:
type: SendCmd
goal:
command: command
feedback: {}
result:
success: success
schema:
properties:
status:
type: string
required:
- status
additionalProperties: false
type: object
hplc.agilent:
description: HPLC device
class:
module: unilabos.devices.hplc.AgilentHPLC:HPLCDriver
type: python
status_types:
device_status: String
could_run: Bool
driver_init_ok: Bool
is_running: Bool
finish_status: String
status_text: String
action_value_mappings:
auto-check_status:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: 检查安捷伦HPLC设备状态的函数。用于监控设备的运行状态、连接状态、错误信息等关键指标。该函数定期查询设备状态确保系统稳定运行及时发现和报告设备异常。适用于自动化流程中的设备监控、故障诊断、系统维护等场景。
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: check_status参数
type: object
type: UniLabJsonCommand
auto-extract_data_from_txt:
feedback: {}
goal: {}
goal_default:
file_path: null
handles: []
result: {}
schema:
description: 从文本文件中提取分析数据的函数。用于解析安捷伦HPLC生成的结果文件提取峰面积、保留时间、浓度等关键分析数据。支持多种文件格式的自动识别和数据结构化处理为后续数据分析和报告生成提供标准化的数据格式。适用于批量数据处理、结果验证、质量控制等分析工作流程。
properties:
feedback: {}
goal:
properties:
file_path:
type: string
required:
- file_path
type: object
result: {}
required:
- goal
title: extract_data_from_txt参数
type: object
type: UniLabJsonCommand
auto-start_sequence:
feedback: {}
goal: {}
goal_default:
params: null
resource: null
wf_name: null
handles: []
result: {}
schema:
description: 启动安捷伦HPLC分析序列的函数。用于执行预定义的分析方法序列包括样品进样、色谱分离、检测等完整的分析流程。支持参数配置、资源分配、工作流程管理等功能实现全自动的样品分析。适用于批量样品处理、标准化分析、质量检测等需要连续自动分析的应用场景。
properties:
feedback: {}
goal:
properties:
params:
type: string
resource:
type: object
wf_name:
type: string
required:
- wf_name
type: object
result: {}
required:
- goal
title: start_sequence参数
type: object
type: UniLabJsonCommand
auto-try_close_sub_device:
feedback: {}
goal: {}
goal_default:
device_name: null
handles: []
result: {}
schema:
description: 尝试关闭HPLC子设备的函数。用于安全地关闭泵、检测器、进样器等各个子模块确保设备正常断开连接并保护硬件安全。该函数提供错误处理和状态确认机制避免强制关闭可能造成的设备损坏。适用于设备维护、系统重启、紧急停机等需要安全关闭设备的场景。
properties:
feedback: {}
goal:
properties:
device_name:
type: string
required: []
type: object
result: {}
required:
- goal
title: try_close_sub_device参数
type: object
type: UniLabJsonCommand
auto-try_open_sub_device:
feedback: {}
goal: {}
goal_default:
device_name: null
handles: []
result: {}
schema:
description: 尝试打开HPLC子设备的函数。用于初始化和连接泵、检测器、进样器等各个子模块建立设备通信并进行自检。该函数提供连接验证和错误恢复机制确保子设备正常启动并准备就绪。适用于设备初始化、系统启动、设备重连等需要建立设备连接的场景。
properties:
feedback: {}
goal:
properties:
device_name:
type: string
required: []
type: object
result: {}
required:
- goal
title: try_open_sub_device参数
type: object
type: UniLabJsonCommand
execute_command_from_outer:
type: SendCmd
feedback: {}
goal:
command: command
feedback: {}
goal_default:
command: ''
handles: []
result:
success: success
schema:
properties:
device_status:
type: string
could_run:
type: boolean
driver_init_ok:
type: boolean
is_running:
type: boolean
finish_status:
type: string
status_text:
type: string
required:
- device_status
- could_run
- driver_init_ok
- is_running
- finish_status
- status_text
additionalProperties: false
type: object
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
module: unilabos.devices.hplc.AgilentHPLC:HPLCDriver
status_types:
could_run: bool
data_file: list
device_status: str
driver_init_ok: bool
finish_status: str
is_running: bool
status_text: str
success: bool
type: python
description: 安捷伦高效液相色谱HPLC分析设备用于复杂化合物的分离、检测和定量分析。该设备通过UI自动化技术控制安捷伦ChemStation软件实现全自动的样品分析流程。具备序列启动、设备状态监控、数据文件提取、结果处理等功能。支持多样品批量处理和实时状态反馈适用于药物分析、环境检测、食品安全、化学研究等需要高精度色谱分析的实验室应用。
handles: []
icon: ''
init_param_schema:
config:
properties:
driver_debug:
default: false
type: string
required: []
type: object
data:
properties:
could_run:
type: boolean
data_file:
type: array
device_status:
type: string
driver_init_ok:
type: boolean
finish_status:
type: string
is_running:
type: boolean
status_text:
type: string
success:
type: boolean
required:
- status_text
- device_status
- could_run
- driver_init_ok
- is_running
- success
- finish_status
- data_file
type: object
version: 0.0.1
raman_home_made:
class:
action_value_mappings:
auto-ccd_time:
feedback: {}
goal: {}
goal_default:
int_time: null
handles: []
result: {}
schema:
description: 设置CCD检测器积分时间的函数。用于配置拉曼光谱仪的信号采集时间控制光谱数据的质量和信噪比。较长的积分时间可获得更高的信号强度和更好的光谱质量但会增加测量时间。该函数允许根据样品特性和测量要求动态调整检测参数优化测量效果。
properties:
feedback: {}
goal:
properties:
int_time:
type: string
required:
- int_time
type: object
result: {}
required:
- goal
title: ccd_time参数
type: object
type: UniLabJsonCommand
auto-laser_on_power:
feedback: {}
goal: {}
goal_default:
output_voltage_laser: null
handles: []
result: {}
schema:
description: 设置激光器输出功率的函数。用于控制拉曼光谱仪激光器的功率输出,调节激光强度以适应不同样品的测量需求。适当的激光功率能够获得良好的拉曼信号同时避免样品损伤。该函数支持精确的功率控制,确保测量结果的稳定性和重现性。
properties:
feedback: {}
goal:
properties:
output_voltage_laser:
type: string
required:
- output_voltage_laser
type: object
result: {}
required:
- goal
title: laser_on_power参数
type: object
type: UniLabJsonCommand
auto-raman_without_background:
feedback: {}
goal: {}
goal_default:
int_time: null
laser_power: null
handles: []
result: {}
schema:
description: 执行无背景扣除的拉曼光谱测量函数。用于直接采集样品的拉曼光谱信号,不进行背景校正处理。该函数配置积分时间和激光功率参数,获取原始光谱数据用于后续的数据处理分析。适用于对光谱数据质量要求较高或需要自定义背景处理流程的测量场景。
properties:
feedback: {}
goal:
properties:
int_time:
type: string
laser_power:
type: string
required:
- int_time
- laser_power
type: object
result: {}
required:
- goal
title: raman_without_background参数
type: object
type: UniLabJsonCommand
auto-raman_without_background_average:
feedback: {}
goal: {}
goal_default:
average: null
int_time: null
laser_power: null
sample_name: null
handles: []
result: {}
schema:
description: 执行多次平均的无背景拉曼光谱测量函数。通过多次测量取平均值来提高光谱数据的信噪比和测量精度,减少随机噪声影响。该函数支持自定义平均次数、积分时间、激光功率等参数,并可为样品指定名称便于数据管理。适用于对测量精度要求较高的定量分析和研究应用。
properties:
feedback: {}
goal:
properties:
average:
type: string
int_time:
type: string
laser_power:
type: string
sample_name:
type: string
required:
- sample_name
- int_time
- laser_power
- average
type: object
result: {}
required:
- goal
title: raman_without_background_average参数
type: object
type: UniLabJsonCommand
raman_cmd:
feedback: {}
goal:
command: command
goal_default:
command: ''
handles: []
result:
success: success
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
module: unilabos.devices.raman_uv.home_made_raman:RamanObj
status_types: {}
type: python
description: 拉曼光谱分析设备用于物质的分子结构和化学成分表征。该设备集成激光器和CCD检测器通过串口通信控制激光功率和光谱采集。具备背景扣除、多次平均、自动数据处理等功能支持高精度的拉曼光谱测量。适用于材料表征、化学分析、质量控制、研究开发等需要分子指纹识别和结构分析的实验应用。
handles: []
icon: ''
init_param_schema:
config:
properties:
baudrate_ccd:
default: 921600
type: string
baudrate_laser:
default: 9600
type: string
port_ccd:
type: string
port_laser:
type: string
required:
- port_laser
- port_ccd
type: object
data:
properties: {}
required: []
type: object
version: 0.0.1

View File

@@ -1,9 +1,32 @@
hotel.thermo_orbitor_rs2_hotel:
description: Thermo Orbitor RS2 Hotel
class:
class:
action_value_mappings: {}
module: unilabos.devices.resource_container.container:HotelContainer
status_types:
rotation: String
type: python
description: Thermo Orbitor RS2 Hotel容器设备用于实验室样品的存储和管理。该设备通过HotelContainer类实现容器的旋转控制和状态监控主要用于存储实验样品、试剂瓶或其他实验器具支持旋转功能以便于样品的自动化存取。适用于需要有序存储和快速访问大量样品的实验室自动化场景。
handles: []
icon: ''
init_param_schema:
config:
properties:
device_config:
type: object
rotation:
type: object
required:
- rotation
- device_config
type: object
data:
properties:
rotation:
type: string
required:
- rotation
type: object
model:
type: device
mesh: thermo_orbitor_rs2_hotel
type: device
version: 0.0.1

View File

@@ -1,56 +1,382 @@
laiyu_add_solid:
description: Laiyu Add Solid
class:
module: unilabos.devices.laiyu_add_solid.laiyu:Laiyu
type: python
status_types: {}
action_value_mappings:
add_powder_tube:
feedback: {}
goal:
compound_mass: compound_mass
powder_tube_number: powder_tube_number
target_tube_position: target_tube_position
goal_default:
compound_mass: 0.0
powder_tube_number: 0
target_tube_position: ''
handles: []
result:
actual_mass_mg: actual_mass_mg
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: SolidDispenseAddPowderTube_Feedback
type: object
goal:
properties:
compound_mass:
type: number
powder_tube_number:
maximum: 2147483647
minimum: -2147483648
type: integer
target_tube_position:
type: string
required:
- powder_tube_number
- target_tube_position
- compound_mass
title: SolidDispenseAddPowderTube_Goal
type: object
result:
properties:
actual_mass_mg:
type: number
return_info:
type: string
success:
type: boolean
required:
- return_info
- actual_mass_mg
- success
title: SolidDispenseAddPowderTube_Result
type: object
required:
- goal
title: SolidDispenseAddPowderTube
type: object
type: SolidDispenseAddPowderTube
auto-calculate_crc:
feedback: {}
goal: {}
goal_default:
data: null
handles: []
result: {}
schema:
description: Modbus CRC-16校验码计算函数。计算Modbus RTU通信协议所需的CRC-16校验码确保数据传输的完整性和可靠性。该函数实现标准的CRC-16算法用于构造完整的Modbus指令帧。
properties:
feedback: {}
goal:
properties:
data:
type: string
required:
- data
type: object
result: {}
required:
- goal
title: calculate_crc参数
type: object
type: UniLabJsonCommand
auto-send_command:
feedback: {}
goal: {}
goal_default:
command: null
handles: []
result: {}
schema:
description: Modbus指令发送函数。构造完整的Modbus RTU指令帧包含CRC校验发送给分装设备并等待响应。该函数处理底层通信协议确保指令的正确传输和响应接收支持最长3分钟的响应等待时间。
properties:
feedback: {}
goal:
properties:
command:
type: string
required:
- command
type: object
result: {}
required:
- goal
title: send_command参数
type: object
type: UniLabJsonCommand
discharge:
feedback: {}
goal:
float_input: float_input
goal_default:
float_in: 0.0
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: FloatSingleInput_Feedback
type: object
goal:
properties:
float_in:
type: number
required:
- float_in
title: FloatSingleInput_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: FloatSingleInput_Result
type: object
required:
- goal
title: FloatSingleInput
type: object
type: FloatSingleInput
move_to_plate:
feedback: {}
goal:
string: string
goal_default:
string: ''
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: StrSingleInput_Feedback
type: object
goal:
properties:
string:
type: string
required:
- string
title: StrSingleInput_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: StrSingleInput_Result
type: object
required:
- goal
title: StrSingleInput
type: object
type: StrSingleInput
move_to_xyz:
type: Point3DSeparateInput
feedback: {}
goal:
x: x
y: y
z: z
feedback: {}
goal_default:
x: 0.0
y: 0.0
z: 0.0
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: Point3DSeparateInput_Feedback
type: object
goal:
properties:
x:
type: number
y:
type: number
z:
type: number
required:
- x
- y
- z
title: Point3DSeparateInput_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: Point3DSeparateInput_Result
type: object
required:
- goal
title: Point3DSeparateInput
type: object
type: Point3DSeparateInput
pick_powder_tube:
type: IntSingleInput
feedback: {}
goal:
int_input: int_input
feedback: {}
goal_default:
int_input: 0
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: IntSingleInput_Feedback
type: object
goal:
properties:
int_input:
maximum: 2147483647
minimum: -2147483648
type: integer
required:
- int_input
title: IntSingleInput_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: IntSingleInput_Result
type: object
required:
- goal
title: IntSingleInput
type: object
type: IntSingleInput
put_powder_tube:
type: IntSingleInput
feedback: {}
goal:
int_input: int_input
feedback: {}
goal_default:
int_input: 0
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: IntSingleInput_Feedback
type: object
goal:
properties:
int_input:
maximum: 2147483647
minimum: -2147483648
type: integer
required:
- int_input
title: IntSingleInput_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: IntSingleInput_Result
type: object
required:
- goal
title: IntSingleInput
type: object
type: IntSingleInput
reset:
type: EmptyIn
feedback: {}
goal: {}
feedback: {}
goal_default: {}
handles: []
result: {}
add_powder_tube:
type: SolidDispenseAddPowderTube
goal:
powder_tube_number: powder_tube_number
target_tube_position: target_tube_position
compound_mass: compound_mass
feedback: {}
result:
actual_mass_mg: actual_mass_mg
move_to_plate:
type: StrSingleInput
goal:
string: string
feedback: {}
result: {}
discharge:
type: FloatSingleInput
goal:
float_input: float_input
feedback: {}
result: {}
schema:
properties: {}
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: EmptyIn_Feedback
type: object
goal:
properties: {}
required: []
title: EmptyIn_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: EmptyIn_Result
type: object
required:
- goal
title: EmptyIn
type: object
type: EmptyIn
module: unilabos.devices.laiyu_add_solid.laiyu:Laiyu
status_types:
status: str
type: python
description: 来渝固体粉末自动分装设备用于实验室化学试剂的精确称量和分装。该设备通过Modbus RTU协议与控制系统通信集成了精密天平、三轴运动平台、粉筒管理系统等组件。支持多种粉末试剂的自动拿取、精确称量、定点分装和归位操作。具备高精度称量、位置控制和批量处理能力适用于化学合成、药物研发、材料制备等需要精确固体试剂配制的实验室应用场景。
handles: []
icon: ''
init_param_schema:
config:
properties:
baudrate:
default: 115200
type: string
port:
type: string
timeout:
default: 0.5
type: string
required:
- port
type: object
data:
properties:
status:
type: string
required:
- status
type: object
version: 0.0.1

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@@ -1,56 +1,698 @@
moveit.toyo_xyz:
description: Toyo XYZ
class:
module: unilabos.devices.ros_dev.moveit_interface:MoveitInterface
type: python
action_value_mappings:
set_position:
type: SendCmd
goal:
command: command
feedback: { }
result: { }
pick_and_place:
type: SendCmd
goal:
command: command
feedback: { }
result: { }
set_status:
type: SendCmd
goal:
command: command
feedback: { }
result: { }
model:
type: device
mesh: toyo_xyz
moveit.arm_slider:
description: Arm with Slider
model:
type: device
mesh: arm_slider
class:
module: unilabos.devices.ros_dev.moveit_interface:MoveitInterface
type: python
action_value_mappings:
set_position:
type: SendCmd
goal:
command: command
auto-check_tf_update_actions:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: check_tf_update_actions的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: check_tf_update_actions参数
type: object
type: UniLabJsonCommand
auto-moveit_joint_task:
feedback: {}
goal: {}
goal_default:
joint_names: null
joint_positions: null
move_group: null
retry: 10
speed: 1
handles: []
result: {}
schema:
description: moveit_joint_task的参数schema
properties:
feedback: {}
goal:
properties:
joint_names:
type: string
joint_positions:
type: string
move_group:
type: string
retry:
default: 10
type: string
speed:
default: 1
type: string
required:
- move_group
- joint_positions
type: object
result: {}
required:
- goal
title: moveit_joint_task参数
type: object
type: UniLabJsonCommand
auto-moveit_task:
feedback: {}
goal: {}
goal_default:
cartesian: false
move_group: null
offsets:
- 0
- 0
- 0
position: null
quaternion: null
retry: 10
speed: 1
target_link: null
handles: []
result: {}
schema:
description: moveit_task的参数schema
properties:
feedback: {}
goal:
properties:
cartesian:
default: false
type: string
move_group:
type: string
offsets:
default:
- 0
- 0
- 0
type: string
position:
type: string
quaternion:
type: string
retry:
default: 10
type: string
speed:
default: 1
type: string
target_link:
type: string
required:
- move_group
- position
- quaternion
type: object
result: {}
required:
- goal
title: moveit_task参数
type: object
type: UniLabJsonCommand
auto-post_init:
feedback: {}
goal: {}
goal_default:
ros_node: null
handles: []
result: {}
schema:
description: post_init的参数schema
properties:
feedback: {}
goal:
properties:
ros_node:
type: string
required:
- ros_node
type: object
result: {}
required:
- goal
title: post_init参数
type: object
type: UniLabJsonCommand
auto-resource_manager:
feedback: {}
goal: {}
goal_default:
parent_link: null
resource: null
handles: []
result: {}
schema:
description: resource_manager的参数schema
properties:
feedback: {}
goal:
properties:
parent_link:
type: string
resource:
type: string
required:
- resource
- parent_link
type: object
result: {}
required:
- goal
title: resource_manager参数
type: object
type: UniLabJsonCommand
auto-wait_for_resource_action:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: wait_for_resource_action的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: wait_for_resource_action参数
type: object
type: UniLabJsonCommand
pick_and_place:
type: SendCmd
feedback: {}
goal:
command: command
feedback: {}
goal_default:
command: ''
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
set_position:
feedback: {}
goal:
command: command
goal_default:
command: ''
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
set_status:
type: SendCmd
feedback: {}
goal:
command: command
feedback: {}
goal_default:
command: ''
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
module: unilabos.devices.ros_dev.moveit_interface:MoveitInterface
status_types: {}
type: python
description: 机械臂与滑块运动系统基于MoveIt2运动规划框架的多自由度机械臂控制设备。该系统集成机械臂和线性滑块通过ROS2和MoveIt2实现精确的轨迹规划和协调运动控制。支持笛卡尔空间和关节空间的运动规划、碰撞检测、逆运动学求解等功能。适用于复杂的pick-and-place操作、精密装配、多工位协作等需要高精度多轴协调运动的实验室自动化应用。
handles: []
icon: ''
init_param_schema:
config:
properties:
device_config:
type: string
joint_poses:
type: string
moveit_type:
type: string
rotation:
type: string
required:
- moveit_type
- joint_poses
type: object
data:
properties: {}
required: []
type: object
model:
mesh: arm_slider
type: device
version: 0.0.1
moveit.toyo_xyz:
class:
action_value_mappings:
auto-check_tf_update_actions:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: check_tf_update_actions的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: check_tf_update_actions参数
type: object
type: UniLabJsonCommand
auto-moveit_joint_task:
feedback: {}
goal: {}
goal_default:
joint_names: null
joint_positions: null
move_group: null
retry: 10
speed: 1
handles: []
result: {}
schema:
description: moveit_joint_task的参数schema
properties:
feedback: {}
goal:
properties:
joint_names:
type: string
joint_positions:
type: string
move_group:
type: string
retry:
default: 10
type: string
speed:
default: 1
type: string
required:
- move_group
- joint_positions
type: object
result: {}
required:
- goal
title: moveit_joint_task参数
type: object
type: UniLabJsonCommand
auto-moveit_task:
feedback: {}
goal: {}
goal_default:
cartesian: false
move_group: null
offsets:
- 0
- 0
- 0
position: null
quaternion: null
retry: 10
speed: 1
target_link: null
handles: []
result: {}
schema:
description: moveit_task的参数schema
properties:
feedback: {}
goal:
properties:
cartesian:
default: false
type: string
move_group:
type: string
offsets:
default:
- 0
- 0
- 0
type: string
position:
type: string
quaternion:
type: string
retry:
default: 10
type: string
speed:
default: 1
type: string
target_link:
type: string
required:
- move_group
- position
- quaternion
type: object
result: {}
required:
- goal
title: moveit_task参数
type: object
type: UniLabJsonCommand
auto-post_init:
feedback: {}
goal: {}
goal_default:
ros_node: null
handles: []
result: {}
schema:
description: post_init的参数schema
properties:
feedback: {}
goal:
properties:
ros_node:
type: string
required:
- ros_node
type: object
result: {}
required:
- goal
title: post_init参数
type: object
type: UniLabJsonCommand
auto-resource_manager:
feedback: {}
goal: {}
goal_default:
parent_link: null
resource: null
handles: []
result: {}
schema:
description: resource_manager的参数schema
properties:
feedback: {}
goal:
properties:
parent_link:
type: string
resource:
type: string
required:
- resource
- parent_link
type: object
result: {}
required:
- goal
title: resource_manager参数
type: object
type: UniLabJsonCommand
auto-wait_for_resource_action:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: wait_for_resource_action的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: wait_for_resource_action参数
type: object
type: UniLabJsonCommand
pick_and_place:
feedback: {}
goal:
command: command
goal_default:
command: ''
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
set_position:
feedback: {}
goal:
command: command
goal_default:
command: ''
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
set_status:
feedback: {}
goal:
command: command
goal_default:
command: ''
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
module: unilabos.devices.ros_dev.moveit_interface:MoveitInterface
status_types: {}
type: python
description: 东洋XYZ三轴运动平台基于MoveIt2运动规划框架的精密定位设备。该设备通过ROS2和MoveIt2实现三维空间的精确运动控制支持复杂轨迹规划、多点定位、速度控制等功能。具备高精度定位、平稳运动、实时轨迹监控等特性。适用于精密加工、样品定位、检测扫描、自动化装配等需要高精度三维运动控制的实验室和工业应用场景。
handles: []
icon: ''
init_param_schema:
config:
properties:
device_config:
type: string
joint_poses:
type: string
moveit_type:
type: string
rotation:
type: string
required:
- moveit_type
- joint_poses
type: object
data:
properties: {}
required: []
type: object
model:
mesh: toyo_xyz
type: device
version: 0.0.1

View File

@@ -1,73 +1,383 @@
separator.homemade:
description: Separator device with homemade grbl controller
class:
module: unilabos.devices.separator.homemade_grbl_conductivity:SeparatorController
type: python
status_types:
sensordata: Float64
status: String
action_value_mappings:
stir:
type: Stir
goal:
stir_time: stir_time,
stir_speed: stir_speed
settling_time: settling_time
feedback:
status: status
result:
success: success
valve_open_cmd:
type: SendCmd
goal:
command: command
feedback:
status: status
result":
success: success
schema:
type: object
properties:
status:
type: string
description: The status of the device
sensordata:
type: number
description: 电导传感器数据
required:
- status
- sensordata
additionalProperties: false
rotavap.one:
description: Rotavap device
class:
module: unilabos.devices.rotavap.rotavap_one:RotavapOne
type: python
status_types:
pump_time: Float64
rotate_time: Float64
action_value_mappings:
auto-cmd_write:
feedback: {}
goal: {}
goal_default:
cmd: null
handles: []
result: {}
schema:
description: cmd_write的参数schema
properties:
feedback: {}
goal:
properties:
cmd:
type: string
required:
- cmd
type: object
result: {}
required:
- goal
title: cmd_write参数
type: object
type: UniLabJsonCommand
auto-main_loop:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: main_loop的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: main_loop参数
type: object
type: UniLabJsonCommand
auto-set_pump_time:
feedback: {}
goal: {}
goal_default:
time: null
handles: []
result: {}
schema:
description: set_pump_time的参数schema
properties:
feedback: {}
goal:
properties:
time:
type: string
required:
- time
type: object
result: {}
required:
- goal
title: set_pump_time参数
type: object
type: UniLabJsonCommand
auto-set_rotate_time:
feedback: {}
goal: {}
goal_default:
time: null
handles: []
result: {}
schema:
description: set_rotate_time的参数schema
properties:
feedback: {}
goal:
properties:
time:
type: string
required:
- time
type: object
result: {}
required:
- goal
title: set_rotate_time参数
type: object
type: UniLabJsonCommand
set_timer:
type: SendCmd
feedback: {}
goal:
command: command
feedback: {}
goal_default:
command: ''
handles: []
result:
success: success
schema:
type: object
properties:
temperature:
type: number
description: 旋蒸水浴温度
pump_time:
type: number
description: The pump time of the device
rotate_time:
type: number
description: The rotate time of the device
required:
- pump_time
- rotate_time
additionalProperties: false
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
module: unilabos.devices.rotavap.rotavap_one:RotavapOne
status_types: {}
type: python
description: 旋转蒸发仪设备,用于有机化学实验中的溶剂回收和浓缩操作。该设备通过串口通信控制,集成旋转和真空泵功能,支持定时控制和自动化操作。具备旋转速度调节、真空度控制、温度管理等功能,实现高效的溶剂蒸发和回收。适用于有机合成、天然产物提取、药物制备等需要溶剂去除和浓缩的实验室应用场景。
handles: []
icon: ''
init_param_schema:
config:
properties:
port:
type: string
rate:
default: 9600
type: string
required:
- port
type: object
data:
properties: {}
required: []
type: object
version: 0.0.1
separator.homemade:
class:
action_value_mappings:
auto-read_sensor_loop:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: read_sensor_loop的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: read_sensor_loop参数
type: object
type: UniLabJsonCommand
auto-valve_open:
feedback: {}
goal: {}
goal_default:
condition: null
value: null
handles: []
result: {}
schema:
description: valve_open的参数schema
properties:
feedback: {}
goal:
properties:
condition:
type: string
value:
type: string
required:
- condition
- value
type: object
result: {}
required:
- goal
title: valve_open参数
type: object
type: UniLabJsonCommand
auto-write:
feedback: {}
goal: {}
goal_default:
data: null
handles: []
result: {}
schema:
description: write的参数schema
properties:
feedback: {}
goal:
properties:
data:
type: string
required:
- data
type: object
result: {}
required:
- goal
title: write参数
type: object
type: UniLabJsonCommand
stir:
feedback:
status: status
goal:
settling_time: settling_time
stir_speed: stir_speed
stir_time: stir_time,
goal_default:
event: ''
settling_time: 0.0
stir_speed: 0.0
stir_time: 0.0
time: ''
time_spec: ''
vessel: ''
handles: []
result:
success: success
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: Stir_Feedback
type: object
goal:
properties:
event:
type: string
settling_time:
type: number
stir_speed:
type: number
stir_time:
type: number
time:
type: string
time_spec:
type: string
vessel:
type: string
required:
- vessel
- time
- event
- time_spec
- stir_time
- stir_speed
- settling_time
title: Stir_Goal
type: object
result:
properties:
message:
type: string
return_info:
type: string
success:
type: boolean
required:
- success
- message
- return_info
title: Stir_Result
type: object
required:
- goal
title: Stir
type: object
type: Stir
valve_open_cmd:
feedback:
status: status
goal:
command: command
goal_default:
command: ''
handles: []
result:
success: success
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
module: unilabos.devices.separator.homemade_grbl_conductivity:SeparatorController
status_types: {}
type: python
description: 液-液分离器设备基于自制Grbl控制器的自动化分离系统。该设备集成搅拌、沉降、阀门控制和电导率传感器通过串口通信实现精确的分离操作控制。支持自动搅拌、分层沉降、基于传感器反馈的智能分液等功能。适用于有机化学中的萃取分离、相分离、液-液提取等需要精确分离控制的实验应用。
handles: []
icon: ''
init_param_schema:
config:
properties:
baudrate_executor:
default: 115200
type: integer
baudrate_sensor:
default: 115200
type: integer
port_executor:
type: string
port_sensor:
type: string
required:
- port_executor
- port_sensor
type: object
data:
properties: {}
required: []
type: object
version: 0.0.1

View File

@@ -1,83 +1,807 @@
syringe_pump_with_valve.runze:
description: Runze Syringe pump with valve
solenoid_valve:
class:
module: unilabos.devices.pump_and_valve.runze_backbone:RunzeSyringePump
action_value_mappings:
auto-close:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: close的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: close参数
type: object
type: UniLabJsonCommand
auto-is_closed:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: is_closed的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: is_closed参数
type: object
type: UniLabJsonCommand
auto-is_open:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: is_open的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: is_open参数
type: object
type: UniLabJsonCommand
auto-open:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: open的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: open参数
type: object
type: UniLabJsonCommand
auto-read_data:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: read_data的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: read_data参数
type: object
type: UniLabJsonCommand
auto-send_command:
feedback: {}
goal: {}
goal_default:
command: null
handles: []
result: {}
schema:
description: send_command的参数schema
properties:
feedback: {}
goal:
properties:
command:
type: string
required:
- command
type: object
result: {}
required:
- goal
title: send_command参数
type: object
type: UniLabJsonCommand
set_valve_position:
feedback: {}
goal:
string: position
goal_default:
string: ''
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: StrSingleInput_Feedback
type: object
goal:
properties:
string:
type: string
required:
- string
title: StrSingleInput_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: StrSingleInput_Result
type: object
required:
- goal
title: StrSingleInput
type: object
type: StrSingleInput
module: unilabos.devices.pump_and_valve.solenoid_valve:SolenoidValve
status_types:
status: str
valve_position: str
type: python
description: 电磁阀控制设备,用于精确的流体路径控制和开关操作。该设备通过串口通信控制电磁阀的开关状态,支持远程操作和状态监测。具备快速响应、可靠密封、状态反馈等特性,广泛应用于流体输送、样品进样、路径切换等需要精确流体控制的实验室自动化应用。
handles: []
icon: ''
init_param_schema:
config:
properties:
io_device_port:
type: string
required:
- io_device_port
type: object
data:
properties:
status:
type: string
valve_position:
type: string
required:
- status
- valve_position
type: object
version: 0.0.1
solenoid_valve.mock:
class:
action_value_mappings:
auto-is_closed:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: is_closed的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: is_closed参数
type: object
type: UniLabJsonCommand
auto-is_open:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: is_open的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: is_open参数
type: object
type: UniLabJsonCommand
auto-set_valve_position:
feedback: {}
goal: {}
goal_default:
position: null
handles: []
result: {}
schema:
description: set_valve_position的参数schema
properties:
feedback: {}
goal:
properties:
position:
type: string
required:
- position
type: object
result: {}
required:
- goal
title: set_valve_position参数
type: object
type: UniLabJsonCommand
close:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: EmptyIn_Feedback
type: object
goal:
properties: {}
required: []
title: EmptyIn_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: EmptyIn_Result
type: object
required:
- goal
title: EmptyIn
type: object
type: EmptyIn
open:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: ''
properties:
feedback:
properties: {}
required: []
title: EmptyIn_Feedback
type: object
goal:
properties: {}
required: []
title: EmptyIn_Goal
type: object
result:
properties:
return_info:
type: string
required:
- return_info
title: EmptyIn_Result
type: object
required:
- goal
title: EmptyIn
type: object
type: EmptyIn
module: unilabos.devices.pump_and_valve.solenoid_valve_mock:SolenoidValveMock
status_types:
status: str
valve_position: str
type: python
description: 模拟电磁阀设备,用于系统测试和开发调试。该设备模拟真实电磁阀的开关操作和状态变化,提供与实际设备相同的控制接口和反馈机制。支持流体路径的虚拟控制,便于在没有实际硬件的情况下进行流体系统的集成测试和算法验证。适用于系统开发、流程调试和培训演示等场景。
handles:
- data_type: fluid
handler_key: in
io_type: target
label: in
side: NORTH
- data_type: fluid
handler_key: out
io_type: source
label: out
side: SOUTH
icon: ''
init_param_schema:
config:
properties:
port:
default: COM6
type: string
required: []
type: object
data:
properties:
status:
type: string
valve_position:
type: string
required:
- status
- valve_position
type: object
version: 0.0.1
syringe_pump_with_valve.runze:
class:
action_value_mappings:
auto-close:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: close的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: close参数
type: object
type: UniLabJsonCommand
auto-initialize:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: initialize的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: initialize参数
type: object
type: UniLabJsonCommand
auto-pull_plunger:
feedback: {}
goal: {}
goal_default:
volume: null
handles: []
result: {}
schema:
description: pull_plunger的参数schema
properties:
feedback: {}
goal:
properties:
volume:
type: number
required:
- volume
type: object
result: {}
required:
- goal
title: pull_plunger参数
type: object
type: UniLabJsonCommand
auto-push_plunger:
feedback: {}
goal: {}
goal_default:
volume: null
handles: []
result: {}
schema:
description: push_plunger的参数schema
properties:
feedback: {}
goal:
properties:
volume:
type: number
required:
- volume
type: object
result: {}
required:
- goal
title: push_plunger参数
type: object
type: UniLabJsonCommand
auto-query_aux_input_status_1:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: query_aux_input_status_1的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: query_aux_input_status_1参数
type: object
type: UniLabJsonCommand
auto-query_aux_input_status_2:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: query_aux_input_status_2的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: query_aux_input_status_2参数
type: object
type: UniLabJsonCommand
auto-query_backlash_position:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: query_backlash_position的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: query_backlash_position参数
type: object
type: UniLabJsonCommand
auto-query_command_buffer_status:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: query_command_buffer_status的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: query_command_buffer_status参数
type: object
type: UniLabJsonCommand
auto-query_software_version:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: query_software_version的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: query_software_version参数
type: object
type: UniLabJsonCommand
auto-send_command:
feedback: {}
goal: {}
goal_default:
full_command: null
handles: []
result: {}
schema:
description: send_command的参数schema
properties:
feedback: {}
goal:
properties:
full_command:
type: string
required:
- full_command
type: object
result: {}
required:
- goal
title: send_command参数
type: object
type: UniLabJsonCommand
auto-set_baudrate:
feedback: {}
goal: {}
goal_default:
baudrate: null
handles: []
result: {}
schema:
description: set_baudrate的参数schema
properties:
feedback: {}
goal:
properties:
baudrate:
type: string
required:
- baudrate
type: object
result: {}
required:
- goal
title: set_baudrate参数
type: object
type: UniLabJsonCommand
auto-set_max_velocity:
feedback: {}
goal: {}
goal_default:
velocity: null
handles: []
result: {}
schema:
description: set_max_velocity的参数schema
properties:
feedback: {}
goal:
properties:
velocity:
type: number
required:
- velocity
type: object
result: {}
required:
- goal
title: set_max_velocity参数
type: object
type: UniLabJsonCommand
auto-set_position:
feedback: {}
goal: {}
goal_default:
max_velocity: null
position: null
handles: []
result: {}
schema:
description: set_position的参数schema
properties:
feedback: {}
goal:
properties:
max_velocity:
type: number
position:
type: number
required:
- position
type: object
result: {}
required:
- goal
title: set_position参数
type: object
type: UniLabJsonCommand
auto-set_valve_position:
feedback: {}
goal: {}
goal_default:
position: null
handles: []
result: {}
schema:
description: set_valve_position的参数schema
properties:
feedback: {}
goal:
properties:
position:
type: string
required:
- position
type: object
result: {}
required:
- goal
title: set_valve_position参数
type: object
type: UniLabJsonCommand
auto-set_velocity_grade:
feedback: {}
goal: {}
goal_default:
velocity: null
handles: []
result: {}
schema:
description: set_velocity_grade的参数schema
properties:
feedback: {}
goal:
properties:
velocity:
type: string
required:
- velocity
type: object
result: {}
required:
- goal
title: set_velocity_grade参数
type: object
type: UniLabJsonCommand
auto-stop_operation:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: stop_operation的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: stop_operation参数
type: object
type: UniLabJsonCommand
auto-wait_error:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: wait_error的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: wait_error参数
type: object
type: UniLabJsonCommand
hardware_interface:
name: hardware_interface
read: send_command
write: send_command
schema:
type: object
properties:
status:
type: string
description: The status of the device
position:
type: number
description: The volume of the syringe
speed_max:
type: number
description: The speed of the syringe
valve_position:
type: string
description: The position of the valve
required:
- status
- position
- valve_position
additionalProperties: false
solenoid_valve.mock:
description: Mock solenoid valve
class:
module: unilabos.devices.pump_and_valve.solenoid_valve_mock:SolenoidValveMock
type: python
module: unilabos.devices.pump_and_valve.runze_backbone:RunzeSyringePump
status_types:
status: String
valve_position: String
action_value_mappings:
open:
type: EmptyIn
goal: {}
feedback: {}
result: {}
close:
type: EmptyIn
goal: {}
feedback: {}
result: {}
handles:
input:
- handler_key: fluid-input
label: Fluid Input
data_type: fluid
output:
- handler_key: fluid-output
label: Fluid Output
data_type: fluid
max_velocity: float
mode: int
plunger_position: String
position: float
status: str
valve_position: str
velocity_end: String
velocity_grade: String
velocity_init: String
type: python
description: 润泽精密注射泵设备,集成阀门控制的高精度流体输送系统。该设备通过串口通信控制,支持多种运行模式和精确的体积控制。具备可变速度控制、精密定位、阀门切换、实时状态监控等功能。适用于微量液体输送、精密进样、流速控制、化学反应进料等需要高精度流体操作的实验室自动化应用。
handles: []
icon: ''
init_param_schema:
type: object
properties:
port:
type: string
description: "通信端口"
default: "COM6"
required:
- port
solenoid_valve:
description: Solenoid valve
class:
module: unilabos.devices.pump_and_valve.solenoid_valve:SolenoidValve
type: python
status_types:
status: String
valve_position: String
action_value_mappings:
set_valve_position:
type: StrSingleInput
goal:
string: position
feedback: {}
result: {}
config:
properties:
address:
default: '1'
type: string
max_volume:
default: 25.0
type: number
mode:
type: string
port:
type: string
required:
- port
type: object
data:
properties:
max_velocity:
type: number
mode:
type: integer
plunger_position:
type: string
position:
type: number
status:
type: string
valve_position:
type: string
velocity_end:
type: string
velocity_grade:
type: string
velocity_init:
type: string
required:
- status
- mode
- max_velocity
- velocity_grade
- velocity_init
- velocity_end
- valve_position
- position
- plunger_position
type: object
version: 0.0.1

View File

@@ -1,29 +1,106 @@
# 仙工智能底盘(知行使用)
agv.SEER:
description: SEER AGV
class:
module: unilabos.devices.agv.agv_navigator:AgvNavigator
type: python
status_types:
pose: Float64MultiArray
status: String
action_value_mappings:
auto-send:
feedback: {}
goal: {}
goal_default:
cmd: null
ex_data: ''
obj: receive_socket
handles: []
result: {}
schema:
description: AGV底层通信命令发送函数。通过TCP socket连接向AGV发送底层控制命令支持pose位置、status状态、nav导航等命令类型。用于获取AGV当前位置坐标、运行状态或发送导航指令。该函数封装了AGV的通信协议将命令转换为十六进制数据包并处理响应解析。
properties:
feedback: {}
goal:
properties:
cmd:
type: string
ex_data:
default: ''
type: string
obj:
default: receive_socket
type: string
required:
- cmd
type: object
result: {}
required:
- goal
title: send参数
type: object
type: UniLabJsonCommand
send_nav_task:
type: SendCmd
feedback: {}
goal:
command: command
feedback: {}
goal_default:
command: ''
handles: []
result:
success: success
schema:
properties:
pose:
type: array
items:
type: number
status:
type: string
required:
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
module: unilabos.devices.agv.agv_navigator:AgvNavigator
status_types:
pose: list
status: str
type: python
description: SEER AGV自动导引车设备用于实验室内物料和设备的自主移动运输。该AGV通过TCP socket与导航系统通信具备精确的定位和路径规划能力。支持实时位置监控、状态查询和导航任务执行可在预设的实验室环境中自主移动至指定位置。适用于样品运输、设备转移、多工位协作等实验室自动化物流场景。
handles: []
icon: ''
init_param_schema:
config:
properties:
host:
type: string
required:
- host
type: object
data:
properties:
pose:
type: array
status:
type: string
required:
- pose
- status
additionalProperties: false
type: object
type: object
version: 0.0.1

View File

@@ -1,37 +1,173 @@
robotic_arm.UR:
description: UR robotic arm
class:
module: unilabos.devices.agv.ur_arm_task:UrArmTask
type: python
status_types:
arm_pose: Float64MultiArray
gripper_pose: Float64
arm_status: String
gripper_status: String
action_value_mappings:
auto-arm_init:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: 机械臂初始化函数。执行UR机械臂的完整初始化流程包括上电、释放制动器、解除保护停止状态等。该函数确保机械臂从安全停止状态恢复到可操作状态是机械臂使用前的必要步骤。初始化完成后机械臂将处于就绪状态可以接收后续的运动指令。
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: arm_init参数
type: object
type: UniLabJsonCommand
auto-load_pose_data:
feedback: {}
goal: {}
goal_default:
data: null
handles: []
result: {}
schema:
description: 从JSON字符串加载位置数据函数。接收包含机械臂位置信息的JSON格式字符串解析并存储位置数据供后续运动任务使用。位置数据通常包含多个预定义的工作位置坐标用于实现精确的多点运动控制。适用于动态配置机械臂工作位置的场景。
properties:
feedback: {}
goal:
properties:
data:
type: string
required:
- data
type: object
result: {}
required:
- goal
title: load_pose_data参数
type: object
type: UniLabJsonCommand
auto-load_pose_file:
feedback: {}
goal: {}
goal_default:
file: null
handles: []
result: {}
schema:
description: 从文件加载位置数据函数。读取指定的JSON文件并加载其中的机械臂位置信息。该函数支持从外部配置文件中获取预设的工作位置便于位置数据的管理和重用。适用于需要从固定配置文件中读取复杂位置序列的应用场景。
properties:
feedback: {}
goal:
properties:
file:
type: string
required:
- file
type: object
result: {}
required:
- goal
title: load_pose_file参数
type: object
type: UniLabJsonCommand
auto-reload_pose:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: 重新加载位置数据函数。重新读取并解析之前设置的位置文件,更新内存中的位置数据。该函数用于在位置文件被修改后刷新机械臂的位置配置,无需重新初始化整个系统。适用于动态更新机械臂工作位置的场景。
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: reload_pose参数
type: object
type: UniLabJsonCommand
move_pos_task:
type: SendCmd
feedback: {}
goal:
command: command
feedback: {}
goal_default:
command: ''
handles: []
result:
success: success
schema:
properties:
arm_pose:
type: array
items:
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
module: unilabos.devices.agv.ur_arm_task:UrArmTask
status_types:
arm_pose: list
arm_status: str
gripper_pose: float
gripper_status: str
type: python
description: Universal Robots机械臂设备用于实验室精密操作和自动化作业。该设备集成了UR机械臂本体、Robotiq夹爪和RTDE通信接口支持六自由度精确运动控制和力觉反馈。具备实时位置监控、状态反馈、轨迹规划等功能可执行复杂的多点位运动任务。适用于样品抓取、精密装配、实验器具操作等需要高精度和高重复性的实验室自动化场景。
handles: []
icon: ''
init_param_schema:
config:
properties:
host:
type: string
retry:
default: 30
type: string
required:
- host
type: object
data:
properties:
arm_pose:
type: array
arm_status:
type: string
gripper_pose:
type: number
gripper_pose:
type: number
arm_status:
type: string
description: 机械臂设备状态
gripper_status:
type: string
description: 机械爪设备状态
required:
gripper_status:
type: string
required:
- arm_pose
- gripper_pose
- arm_status
- gripper_status
additionalProperties: false
type: object
type: object
version: 0.0.1

View File

@@ -1,37 +1,590 @@
gripper.mock:
description: Mock gripper
class:
module: unilabos.devices.gripper.mock:MockGripper
type: python
status_types:
position: Float64
torque: Float64
status: String
action_value_mappings:
push_to:
type: GripperCommand
goal:
command.position: position
command.max_effort: torque
feedback:
position: position
effort: torque
result:
position: position
effort: torque
gripper.misumi_rz:
description: Misumi RZ gripper
class:
module: unilabos.devices.motor:Grasp.EleGripper
type: python
status_types:
status: String
action_value_mappings:
auto-data_loop:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: data_loop的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: data_loop参数
type: object
type: UniLabJsonCommand
auto-data_reader:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: data_reader的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: data_reader参数
type: object
type: UniLabJsonCommand
auto-gripper_move:
feedback: {}
goal: {}
goal_default:
force: null
pos: null
speed: null
handles: []
result: {}
schema:
description: 夹爪抓取运动控制函数。控制夹爪的开合运动,支持位置、速度、力矩的精确设定。位置参数控制夹爪开合程度,速度参数控制运动快慢,力矩参数控制夹持强度。该函数提供安全的力控制,避免损坏被抓取物体,适用于各种形状和材质的物品抓取。
properties:
feedback: {}
goal:
properties:
force:
type: string
pos:
type: string
speed:
type: string
required:
- pos
- speed
- force
type: object
result: {}
required:
- goal
title: gripper_move参数
type: object
type: UniLabJsonCommand
auto-init_gripper:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: 夹爪初始化函数。执行Misumi RZ夹爪的完整初始化流程包括Modbus通信建立、电机参数配置、传感器校准等。该函数确保夹爪系统从安全状态恢复到可操作状态是夹爪使用前的必要步骤。初始化完成后夹爪将处于就绪状态可接收抓取和旋转指令。
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: init_gripper参数
type: object
type: UniLabJsonCommand
auto-modbus_crc:
feedback: {}
goal: {}
goal_default:
data: null
handles: []
result: {}
schema:
description: modbus_crc的参数schema
properties:
feedback: {}
goal:
properties:
data:
type: string
required:
- data
type: object
result: {}
required:
- goal
title: modbus_crc参数
type: object
type: UniLabJsonCommand
auto-move_and_rotate:
feedback: {}
goal: {}
goal_default:
grasp_F: null
grasp_pos: null
grasp_v: null
spin_F: null
spin_pos: null
spin_v: null
handles: []
result: {}
schema:
description: move_and_rotate的参数schema
properties:
feedback: {}
goal:
properties:
grasp_F:
type: string
grasp_pos:
type: string
grasp_v:
type: string
spin_F:
type: string
spin_pos:
type: string
spin_v:
type: string
required:
- spin_pos
- grasp_pos
- spin_v
- grasp_v
- spin_F
- grasp_F
type: object
result: {}
required:
- goal
title: move_and_rotate参数
type: object
type: UniLabJsonCommand
auto-node_gripper_move:
feedback: {}
goal: {}
goal_default:
cmd: null
handles: []
result: {}
schema:
description: 节点夹爪移动任务函数。接收逗号分隔的命令字符串,解析位置、速度、力矩参数并执行夹爪抓取动作。该函数等待运动完成并返回执行结果,提供同步的运动控制接口。适用于需要可靠完成确认的精密抓取操作。
properties:
feedback: {}
goal:
properties:
cmd:
type: string
required:
- cmd
type: object
result: {}
required:
- goal
title: node_gripper_move参数
type: object
type: UniLabJsonCommand
auto-node_rotate_move:
feedback: {}
goal: {}
goal_default:
cmd: null
handles: []
result: {}
schema:
description: 节点旋转移动任务函数。接收逗号分隔的命令字符串,解析角度、速度、力矩参数并执行夹爪旋转动作。该函数等待旋转完成并返回执行结果,提供同步的旋转控制接口。适用于需要精确角度定位和完成确认的旋转操作。
properties:
feedback: {}
goal:
properties:
cmd:
type: string
required:
- cmd
type: object
result: {}
required:
- goal
title: node_rotate_move参数
type: object
type: UniLabJsonCommand
auto-read_address:
feedback: {}
goal: {}
goal_default:
address: null
data_len: null
id: null
handles: []
result: {}
schema:
description: read_address的参数schema
properties:
feedback: {}
goal:
properties:
address:
type: string
data_len:
type: string
id:
type: string
required:
- id
- address
- data_len
type: object
result: {}
required:
- goal
title: read_address参数
type: object
type: UniLabJsonCommand
auto-rotate_move_abs:
feedback: {}
goal: {}
goal_default:
force: null
pos: null
speed: null
handles: []
result: {}
schema:
description: 夹爪绝对位置旋转控制函数。控制夹爪主轴旋转到指定的绝对角度位置支持360度连续旋转。位置参数指定目标角度速度参数控制旋转速率力矩参数设定旋转阻力限制。该函数提供高精度的角度定位适用于需要精确方向控制的操作场景。
properties:
feedback: {}
goal:
properties:
force:
type: string
pos:
type: string
speed:
type: string
required:
- pos
- speed
- force
type: object
result: {}
required:
- goal
title: rotate_move_abs参数
type: object
type: UniLabJsonCommand
auto-send_cmd:
feedback: {}
goal: {}
goal_default:
address: null
data: null
fun: null
id: null
handles: []
result: {}
schema:
description: send_cmd的参数schema
properties:
feedback: {}
goal:
properties:
address:
type: string
data:
type: string
fun:
type: string
id:
type: string
required:
- id
- fun
- address
- data
type: object
result: {}
required:
- goal
title: send_cmd参数
type: object
type: UniLabJsonCommand
auto-wait_for_gripper:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: wait_for_gripper的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: wait_for_gripper参数
type: object
type: UniLabJsonCommand
auto-wait_for_gripper_init:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: wait_for_gripper_init的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: wait_for_gripper_init参数
type: object
type: UniLabJsonCommand
auto-wait_for_rotate:
feedback: {}
goal: {}
goal_default: {}
handles: []
result: {}
schema:
description: wait_for_rotate的参数schema
properties:
feedback: {}
goal:
properties: {}
required: []
type: object
result: {}
required:
- goal
title: wait_for_rotate参数
type: object
type: UniLabJsonCommand
execute_command_from_outer:
type: SendCmd
feedback: {}
goal:
command: command
feedback: {}
goal_default:
command: ''
handles: []
result:
success: success
schema:
description: ''
properties:
feedback:
properties:
status:
type: string
required:
- status
title: SendCmd_Feedback
type: object
goal:
properties:
command:
type: string
required:
- command
title: SendCmd_Goal
type: object
result:
properties:
return_info:
type: string
success:
type: boolean
required:
- return_info
- success
title: SendCmd_Result
type: object
required:
- goal
title: SendCmd
type: object
type: SendCmd
module: unilabos.devices.motor.Grasp:EleGripper
status_types:
status: str
type: python
description: Misumi RZ系列电子夹爪设备集成旋转和抓取双重功能的精密夹爪系统。该设备通过Modbus RTU协议与控制系统通信支持位置、速度、力矩的精确控制。具备高精度的位置反馈、实时状态监控和故障检测功能。适用于需要精密抓取和旋转操作的实验室自动化场景如样品管理、精密装配、器件操作等应用。
handles: []
icon: ''
init_param_schema:
config:
properties:
baudrate:
default: 115200
type: string
id:
default: 9
type: string
port:
type: string
pos_error:
default: -11
type: string
required:
- port
type: object
data:
properties:
status:
type: string
required:
- status
type: object
version: 0.0.1
gripper.mock:
class:
action_value_mappings:
auto-edit_id:
feedback: {}
goal: {}
goal_default:
params: '{}'
resource:
Gripper1: {}
wf_name: gripper_run
handles: []
result: {}
schema:
description: 模拟夹爪资源ID编辑函数。用于测试和演示资源管理功能模拟修改夹爪资源的标识信息。该函数接收工作流名称、参数和资源对象模拟真实的资源更新过程并返回修改后的资源信息。适用于系统测试和开发调试场景。
properties:
feedback: {}
goal:
properties:
params:
default: '{}'
type: string
resource:
default:
Gripper1: {}
type: object
wf_name:
default: gripper_run
type: string
required: []
type: object
result: {}
required:
- goal
title: edit_id参数
type: object
type: UniLabJsonCommand
push_to:
feedback:
effort: torque
position: position
goal:
command.max_effort: torque
command.position: position
goal_default:
command:
max_effort: 0.0
position: 0.0
handles: []
result:
effort: torque
position: position
schema:
description: ''
properties:
feedback:
properties:
effort:
type: number
position:
type: number
reached_goal:
type: boolean
stalled:
type: boolean
required:
- position
- effort
- stalled
- reached_goal
title: GripperCommand_Feedback
type: object
goal:
properties:
command:
properties:
max_effort:
type: number
position:
type: number
required:
- position
- max_effort
title: GripperCommand
type: object
required:
- command
title: GripperCommand_Goal
type: object
result:
properties:
effort:
type: number
position:
type: number
reached_goal:
type: boolean
stalled:
type: boolean
required:
- position
- effort
- stalled
- reached_goal
title: GripperCommand_Result
type: object
required:
- goal
title: GripperCommand
type: object
type: GripperCommand
module: unilabos.devices.gripper.mock:MockGripper
status_types:
position: float
status: str
torque: float
velocity: float
type: python
description: 模拟夹爪设备,用于系统测试和开发调试。该设备模拟真实夹爪的位置、速度、力矩等物理特性,支持虚拟的抓取和移动操作。提供与真实夹爪相同的接口和状态反馈,便于在没有实际硬件的情况下进行系统集成测试和算法验证。适用于软件开发、系统调试和培训演示等场景。
handles: []
icon: ''
init_param_schema:
config:
properties: {}
required: []
type: object
data:
properties:
position:
type: number
status:
type: string
torque:
type: number
velocity:
type: number
required:
- position
- velocity
- torque
- status
type: object
version: 0.0.1

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